Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99731 * 2 1 4 4 H 1.48500 * 109.46746 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47102 * 300.00036 * 3 2 1 6 6 H 1.48501 * 109.46940 * 60.00441 * 3 2 1 7 7 C 1.38810 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99888 * 180.02562 * 9 7 2 11 11 C 1.53049 * 109.45919 * 205.00341 * 10 9 7 12 12 C 1.53188 * 109.31190 * 178.62649 * 11 10 9 13 13 N 1.46926 * 108.77405 * 54.63478 * 12 11 10 14 14 C 1.34780 * 120.63097 * 126.36846 * 13 12 11 15 15 O 1.21289 * 119.99921 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00265 * 180.02562 * 14 13 12 17 17 C 1.50692 * 109.47307 * 179.97438 * 16 14 13 18 18 C 1.38251 * 119.98437 * 265.25495 * 17 16 14 19 19 C 1.38180 * 120.04187 * 180.30154 * 18 17 16 20 20 C 1.38490 * 119.99785 * 359.44103 * 19 18 17 21 21 F 1.35097 * 120.01901 * 180.25502 * 20 19 18 22 22 C 1.38416 * 119.96564 * 0.28068 * 20 19 18 23 23 C 1.38342 * 119.98208 * 85.00103 * 17 16 14 24 24 Cl 1.73602 * 120.00040 * 359.97438 * 23 17 16 25 25 C 1.46929 * 118.74170 * 306.64264 * 13 12 11 26 26 C 1.52751 * 109.00851 * 53.30640 * 25 13 12 27 27 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 28 28 H 0.96994 * 119.99996 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46347 * 324.96961 * 10 9 7 30 30 H 1.09003 * 109.49731 * 58.67509 * 11 10 9 31 31 H 1.08995 * 109.51829 * 298.59532 * 11 10 9 32 32 H 1.08993 * 109.59002 * 294.84619 * 12 11 10 33 33 H 1.09000 * 109.69966 * 174.48737 * 12 11 10 34 34 H 1.09005 * 109.47206 * 59.99914 * 16 14 13 35 35 H 1.09002 * 109.46946 * 299.99875 * 16 14 13 36 36 H 1.08002 * 119.98035 * 0.03808 * 18 17 16 37 37 H 1.08002 * 120.00445 * 179.72636 * 19 18 17 38 38 H 1.08000 * 120.02315 * 179.97438 * 22 20 19 39 39 H 1.08993 * 109.58630 * 173.14765 * 25 13 12 40 40 H 1.09006 * 109.58139 * 293.57043 * 25 13 12 41 41 H 1.08993 * 109.56866 * 185.55641 * 26 25 13 42 42 H 1.09005 * 109.38642 * 65.51454 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.1805 -4.7522 -0.6105 12 6 1.9620 -6.0694 -0.6403 13 7 2.4412 -6.3658 0.7167 14 6 2.1723 -7.5526 1.2960 15 8 1.5287 -8.3880 0.6968 16 6 2.6703 -7.8414 2.6887 17 6 2.2374 -9.2249 3.1002 18 6 1.0760 -9.3969 3.8301 19 6 0.6812 -10.6644 4.2135 20 6 1.4430 -11.7645 3.8566 21 9 1.0547 -13.0044 4.2267 22 6 2.6028 -11.5929 3.1208 23 6 2.9996 -10.3227 2.7429 24 17 4.4541 -10.1063 1.8201 25 6 3.2139 -5.3414 1.4325 26 6 2.4232 -4.0344 1.4369 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.9685 -3.5504 -0.5905 30 1 0.9017 -4.4716 -1.6262 31 1 0.2812 -4.8763 -0.0074 32 1 2.8123 -5.9747 -1.3155 33 1 1.3118 -6.8747 -0.9822 34 1 2.2551 -7.1099 3.3820 35 1 3.7585 -7.7808 2.7053 36 1 0.4791 -8.5397 4.1046 37 1 -0.2239 -10.7977 4.7875 38 1 3.1978 -12.4501 2.8423 39 1 3.3875 -5.6653 2.4586 40 1 4.1685 -5.1860 0.9296 41 1 3.0287 -3.2430 1.8784 42 1 1.5123 -4.1646 2.0213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996949264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -53.730147 kcal Electronic energy + Delta-G solvation = -26629.928289 eV Core-core repulsion = 22550.218786 eV Total energy + Delta-G solvation = -4079.709502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.27539 -40.46463 -39.27521 -37.34799 -36.78196 -34.51965 -33.16166 -32.00787 -31.33709 -30.86133 -29.36651 -27.61361 -24.84325 -23.54142 -23.05941 -22.90293 -21.95684 -20.30461 -18.89057 -18.16793 -17.31116 -17.15202 -17.03494 -16.26552 -15.97038 -15.46349 -15.27286 -14.92959 -14.82938 -14.18558 -14.07010 -13.98777 -13.78267 -13.54480 -13.50787 -13.25878 -12.96953 -12.61642 -12.31725 -12.09276 -11.92977 -11.67678 -11.62360 -11.58495 -11.22904 -11.00400 -10.91812 -10.85897 -10.52424 -10.24093 -9.88174 -9.82437 -9.71455 -9.34170 -8.96968 -8.90119 -8.52849 -7.02574 -5.82168 -3.11558 0.60561 0.70758 1.70836 2.63890 2.88612 3.22684 3.38916 3.44536 3.46939 3.84742 4.21072 4.30228 4.49714 4.52994 4.55278 4.72440 5.00528 5.01505 5.11167 5.26879 5.29715 5.30675 5.37382 5.48718 5.50665 5.52357 5.62351 5.68837 5.70819 5.90219 5.91748 5.97421 6.18776 6.31849 6.32997 6.35576 6.46659 6.57561 6.84725 6.98868 7.46761 7.64440 8.19292 8.36053 9.47417 10.04777 10.39261 11.40389 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024276 B = 0.002233 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.103730 B =12536.704283 C =12899.622703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.117 3.883 13 N -0.605 5.605 14 C 0.520 3.480 15 O -0.539 6.539 16 C -0.109 4.109 17 C -0.062 4.062 18 C -0.065 4.065 19 C -0.147 4.147 20 C 0.109 3.891 21 F -0.135 7.135 22 C -0.147 4.147 23 C 0.007 3.993 24 Cl -0.053 7.053 25 C 0.106 3.894 26 C -0.152 4.152 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.638 -22.361 8.635 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.178 4.178 12 C -0.006 4.006 13 N -0.338 5.338 14 C 0.307 3.693 15 O -0.417 6.417 16 C -0.148 4.148 17 C -0.064 4.064 18 C -0.083 4.083 19 C -0.165 4.165 20 C 0.090 3.910 21 F -0.113 7.113 22 C -0.166 4.166 23 C -0.020 4.020 24 Cl -0.024 7.024 25 C -0.017 4.017 26 C -0.193 4.193 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.541 -22.663 8.212 24.977 hybrid contribution 0.211 0.888 0.067 0.915 sum 6.753 -21.776 8.279 24.255 Atomic orbital electron populations 1.69671 1.05132 1.25598 1.57598 1.24758 0.95505 0.97736 1.02959 0.86141 0.78773 0.84187 0.77213 1.20546 1.21870 1.21878 1.19270 0.90984 0.84067 1.42747 0.91110 1.42444 1.05817 0.99717 1.88478 1.20160 0.94470 0.86091 0.92411 1.22204 0.99182 0.94121 1.02254 1.21611 0.98742 0.98029 0.82196 1.48142 1.54190 1.14612 1.16870 1.20218 0.79948 0.81664 0.87458 1.90703 1.40109 1.45945 1.64920 1.20780 1.03821 0.94301 0.95946 1.19263 0.95043 0.93671 0.98384 1.20871 0.94421 0.97251 0.95757 1.21214 1.01113 0.91547 1.02673 1.17437 0.94774 0.80000 0.98829 1.91523 1.90625 1.39540 1.89618 1.20900 0.97351 0.97213 1.01174 1.20426 0.90731 0.93583 0.97279 1.98388 1.34661 1.97346 1.71956 1.21809 0.94783 0.88814 0.96338 1.22603 1.00099 0.94742 1.01860 0.93522 0.78268 0.93407 0.90568 0.91859 0.91606 0.89365 0.87118 0.87319 0.83863 0.83942 0.83678 0.90519 0.91335 0.90532 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 N -0.72 -17.24 5.12 -53.38 -0.27 -17.51 16 10 C 0.18 3.26 2.73 -67.89 -0.19 3.07 16 11 C -0.14 -2.20 5.55 -26.61 -0.15 -2.35 16 12 C 0.12 1.61 6.44 -3.71 -0.02 1.59 16 13 N -0.60 -7.84 2.98 -173.04 -0.52 -8.36 16 14 C 0.52 6.82 7.69 -10.98 -0.08 6.73 16 15 O -0.54 -8.85 15.45 5.55 0.09 -8.76 16 16 C -0.11 -1.05 3.69 -29.04 -0.11 -1.15 16 17 C -0.06 -0.63 4.38 -104.58 -0.46 -1.09 16 18 C -0.06 -0.57 9.68 -39.60 -0.38 -0.96 16 19 C -0.15 -1.25 10.03 -39.51 -0.40 -1.65 16 20 C 0.11 1.04 7.30 -39.42 -0.29 0.76 16 21 F -0.13 -1.33 17.27 2.25 0.04 -1.29 16 22 C -0.15 -1.41 9.81 -39.48 -0.39 -1.80 16 23 C 0.01 0.07 6.31 -39.50 -0.25 -0.18 16 24 Cl -0.05 -0.53 27.40 -51.86 -1.42 -1.96 16 25 C 0.11 1.23 6.31 -3.94 -0.02 1.21 16 26 C -0.15 -2.34 5.64 -26.84 -0.15 -2.49 16 27 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.38 9.88 7.80 -40.82 -0.32 9.56 16 29 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 34 H 0.11 0.84 7.59 -51.93 -0.39 0.45 16 35 H 0.11 0.91 6.93 -51.93 -0.36 0.55 16 36 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -31.57 365.63 -9.52 -41.09 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.51 Total: 6.61 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -3.13 Total: -5.27 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.06 Total: -52.66 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.42 Total: -1.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.57 -9.52 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996949264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.637 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds