Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99731 * 2 1 4 4 H 1.48500 * 109.46746 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47102 * 300.00036 * 3 2 1 6 6 H 1.48501 * 109.46940 * 60.00441 * 3 2 1 7 7 C 1.38810 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99888 * 180.02562 * 9 7 2 11 11 C 1.53049 * 109.45919 * 205.00341 * 10 9 7 12 12 C 1.53188 * 109.31190 * 178.62649 * 11 10 9 13 13 N 1.46926 * 108.77405 * 54.63478 * 12 11 10 14 14 C 1.34780 * 120.63097 * 126.36846 * 13 12 11 15 15 O 1.21289 * 119.99921 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00265 * 180.02562 * 14 13 12 17 17 C 1.50692 * 109.47307 * 179.97438 * 16 14 13 18 18 C 1.38251 * 119.98437 * 265.25495 * 17 16 14 19 19 C 1.38180 * 120.04187 * 180.30154 * 18 17 16 20 20 C 1.38490 * 119.99785 * 359.44103 * 19 18 17 21 21 F 1.35097 * 120.01901 * 180.25502 * 20 19 18 22 22 C 1.38416 * 119.96564 * 0.28068 * 20 19 18 23 23 C 1.38342 * 119.98208 * 85.00103 * 17 16 14 24 24 Cl 1.73602 * 120.00040 * 359.97438 * 23 17 16 25 25 C 1.46929 * 118.74170 * 306.64264 * 13 12 11 26 26 C 1.52751 * 109.00851 * 53.30640 * 25 13 12 27 27 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 28 28 H 0.96994 * 119.99996 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46347 * 324.96961 * 10 9 7 30 30 H 1.09003 * 109.49731 * 58.67509 * 11 10 9 31 31 H 1.08995 * 109.51829 * 298.59532 * 11 10 9 32 32 H 1.08993 * 109.59002 * 294.84619 * 12 11 10 33 33 H 1.09000 * 109.69966 * 174.48737 * 12 11 10 34 34 H 1.09005 * 109.47206 * 59.99914 * 16 14 13 35 35 H 1.09002 * 109.46946 * 299.99875 * 16 14 13 36 36 H 1.08002 * 119.98035 * 0.03808 * 18 17 16 37 37 H 1.08002 * 120.00445 * 179.72636 * 19 18 17 38 38 H 1.08000 * 120.02315 * 179.97438 * 22 20 19 39 39 H 1.08993 * 109.58630 * 173.14765 * 25 13 12 40 40 H 1.09006 * 109.58139 * 293.57043 * 25 13 12 41 41 H 1.08993 * 109.56866 * 185.55641 * 26 25 13 42 42 H 1.09005 * 109.38642 * 65.51454 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.1805 -4.7522 -0.6105 12 6 1.9620 -6.0694 -0.6403 13 7 2.4412 -6.3658 0.7167 14 6 2.1723 -7.5526 1.2960 15 8 1.5287 -8.3880 0.6968 16 6 2.6703 -7.8414 2.6887 17 6 2.2374 -9.2249 3.1002 18 6 1.0760 -9.3969 3.8301 19 6 0.6812 -10.6644 4.2135 20 6 1.4430 -11.7645 3.8566 21 9 1.0547 -13.0044 4.2267 22 6 2.6028 -11.5929 3.1208 23 6 2.9996 -10.3227 2.7429 24 17 4.4541 -10.1063 1.8201 25 6 3.2139 -5.3414 1.4325 26 6 2.4232 -4.0344 1.4369 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.9685 -3.5504 -0.5905 30 1 0.9017 -4.4716 -1.6262 31 1 0.2812 -4.8763 -0.0074 32 1 2.8123 -5.9747 -1.3155 33 1 1.3118 -6.8747 -0.9822 34 1 2.2551 -7.1099 3.3820 35 1 3.7585 -7.7808 2.7053 36 1 0.4791 -8.5397 4.1046 37 1 -0.2239 -10.7977 4.7875 38 1 3.1978 -12.4501 2.8423 39 1 3.3875 -5.6653 2.4586 40 1 4.1685 -5.1860 0.9296 41 1 3.0287 -3.2430 1.8784 42 1 1.5123 -4.1646 2.0213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996949264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -71.251922 kcal Electronic energy + Delta-G solvation = -26630.688090 eV Core-core repulsion = 22550.218786 eV Total energy + Delta-G solvation = -4080.469303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.00820 -41.41809 -40.11959 -38.59563 -37.51798 -36.10391 -34.13120 -33.55689 -32.07440 -31.94806 -30.99479 -28.50603 -26.42742 -24.40147 -24.22813 -24.15273 -22.90893 -21.56163 -20.03605 -19.03807 -18.88268 -18.26363 -17.86394 -17.14295 -16.74294 -16.66889 -16.35896 -16.20146 -15.67239 -15.45929 -15.36225 -14.97579 -14.95288 -14.79206 -14.64814 -14.34739 -13.89682 -13.80214 -13.38424 -13.12380 -12.97997 -12.93416 -12.85070 -12.60371 -12.38704 -12.27953 -12.13486 -12.08760 -11.98340 -11.96304 -11.67721 -11.27319 -10.97964 -10.79271 -10.03605 -9.64238 -9.62879 -8.98238 -7.91683 -5.19976 -0.10834 0.02202 0.97488 1.49494 1.50121 1.59648 1.65133 1.99072 2.42699 2.58318 3.14899 3.42006 3.51245 3.61171 3.63061 3.84687 3.88717 3.98992 4.06594 4.12075 4.22930 4.33131 4.39387 4.44161 4.45391 4.61495 4.68041 4.79535 4.85479 4.86099 4.89098 4.90011 5.04451 5.07276 5.12047 5.22941 5.34548 5.52721 5.57564 5.65905 5.67728 6.30398 6.46058 7.18677 7.36437 8.12902 8.35159 9.32214 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024276 B = 0.002233 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.103730 B =12536.704283 C =12899.622703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.298 1.298 6 H -0.296 1.296 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.739 5.739 10 C 0.172 3.828 11 C -0.127 4.127 12 C 0.124 3.876 13 N -0.607 5.607 14 C 0.518 3.482 15 O -0.575 6.575 16 C -0.105 4.105 17 C -0.074 4.074 18 C -0.068 4.068 19 C -0.145 4.145 20 C 0.097 3.903 21 F -0.139 7.139 22 C -0.154 4.154 23 C -0.007 4.007 24 Cl -0.056 7.056 25 C 0.113 3.887 26 C -0.141 4.141 27 H 0.249 0.751 28 H 0.370 0.630 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.223 -23.007 9.793 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.226 1.226 6 H -0.223 1.223 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.378 5.378 10 C 0.064 3.936 11 C -0.166 4.166 12 C 0.001 3.999 13 N -0.340 5.340 14 C 0.308 3.692 15 O -0.455 6.455 16 C -0.144 4.144 17 C -0.076 4.076 18 C -0.086 4.086 19 C -0.163 4.163 20 C 0.078 3.922 21 F -0.118 7.118 22 C -0.173 4.173 23 C -0.033 4.033 24 Cl -0.027 7.027 25 C -0.010 4.010 26 C -0.182 4.182 27 H 0.058 0.942 28 H 0.201 0.799 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.143 0.857 36 H 0.181 0.819 37 H 0.181 0.819 38 H 0.172 0.828 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.188 -23.349 9.384 26.463 hybrid contribution -0.287 0.983 -0.314 1.071 sum 7.901 -22.366 9.070 25.395 Atomic orbital electron populations 1.69828 1.06678 1.25777 1.60090 1.25538 0.96288 1.01049 1.04285 0.85128 0.78460 0.80153 0.76378 1.18698 1.22609 1.22334 1.19662 0.91490 0.85024 1.40044 0.90228 1.42683 1.05392 1.01098 1.88628 1.20433 0.94161 0.84536 0.94488 1.22045 0.98614 0.94629 1.01296 1.21457 0.98866 0.96190 0.83413 1.48213 1.54182 1.15064 1.16494 1.20802 0.79045 0.80956 0.88424 1.90692 1.41735 1.47025 1.66067 1.20839 1.04835 0.94786 0.93918 1.19444 0.95533 0.93799 0.98785 1.21167 0.94144 0.98053 0.95245 1.21493 1.01520 0.91127 1.02188 1.17619 0.95145 0.80179 0.99280 1.91510 1.90676 1.39890 1.89710 1.21051 0.97599 0.97500 1.01142 1.20568 0.90993 0.94036 0.97752 1.98380 1.34846 1.97356 1.72121 1.21859 0.94142 0.86346 0.98606 1.22369 1.00119 0.96724 0.98979 0.94247 0.79894 0.93455 0.91382 0.93063 0.90199 0.90040 0.84508 0.85719 0.81858 0.81851 0.82793 0.86893 0.89772 0.91392 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 3 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.23 -12.13 9.93 84.03 0.83 -11.29 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -35.30 5.12 -322.80 -1.65 -36.95 16 10 C 0.17 6.10 2.73 45.02 0.12 6.23 16 11 C -0.13 -3.97 5.55 30.67 0.17 -3.80 16 12 C 0.12 3.24 6.44 86.36 0.56 3.80 16 13 N -0.61 -14.23 2.98 -819.75 -2.44 -16.67 16 14 C 0.52 12.38 7.69 87.66 0.67 13.05 16 15 O -0.58 -18.10 15.45 -3.06 -0.05 -18.15 16 16 C -0.10 -1.68 3.69 29.10 0.11 -1.57 16 17 C -0.07 -1.33 4.38 -19.84 -0.09 -1.42 16 18 C -0.07 -1.04 9.68 22.26 0.22 -0.83 16 19 C -0.14 -2.18 10.03 22.32 0.22 -1.96 16 20 C 0.10 1.74 7.30 22.37 0.16 1.90 16 21 F -0.14 -2.63 17.27 44.97 0.78 -1.85 16 22 C -0.15 -2.78 9.81 22.34 0.22 -2.56 16 23 C -0.01 -0.13 6.31 22.32 0.14 0.01 16 24 Cl -0.06 -1.06 27.40 -2.72 -0.07 -1.13 16 25 C 0.11 2.24 6.31 86.21 0.54 2.79 16 26 C -0.14 -4.08 5.64 30.52 0.17 -3.91 16 27 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.37 19.48 7.80 -92.71 -0.72 18.76 16 29 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 2.29 7.00 -2.39 -0.02 2.27 16 34 H 0.14 1.48 7.59 -2.38 -0.02 1.46 16 35 H 0.12 1.61 6.93 -2.39 -0.02 1.60 16 36 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 39 H 0.11 1.49 5.93 -2.39 -0.01 1.48 16 40 H 0.08 1.49 8.14 -2.38 -0.02 1.48 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -68.80 365.63 3.73 -65.08 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.33 Total: 24.66 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 4.52 Total: -3.53 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -3.81 Total: -111.94 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.05 Total: -18.15 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.07 Total: -1.13 kcal Total: -68.80 3.73 -65.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996949264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.174 kcal (2) G-P(sol) polarization free energy of solvation -68.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds