Wall clock time and date at job start Sat Apr 11 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00227 * 2 1 4 4 H 1.48501 * 109.47484 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47133 * 300.00441 * 3 2 1 6 6 H 1.48504 * 109.47298 * 60.00065 * 3 2 1 7 7 C 1.38810 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00064 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99991 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00089 * 180.02562 * 9 7 2 11 11 C 1.53040 * 109.46169 * 155.00365 * 10 9 7 12 12 C 1.53187 * 109.31363 * 181.38490 * 11 10 9 13 13 N 1.46934 * 108.77437 * 305.36073 * 12 11 10 14 14 C 1.34777 * 120.62798 * 233.59100 * 13 12 11 15 15 O 1.21282 * 120.00204 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99654 * 180.02562 * 14 13 12 17 17 C 1.50704 * 109.47132 * 179.97438 * 16 14 13 18 18 C 1.38235 * 120.00378 * 99.99783 * 17 16 14 19 19 C 1.38226 * 120.04680 * 180.02562 * 18 17 16 20 20 C 1.38255 * 120.05959 * 359.97438 * 19 18 17 21 21 C 1.38284 * 120.01644 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 120.02475 * 179.97438 * 21 20 19 23 23 C 1.38405 * 120.00396 * 280.22596 * 17 16 14 24 24 F 1.35101 * 120.03290 * 0.02562 * 23 17 16 25 25 C 1.46925 * 118.73650 * 53.86005 * 13 12 11 26 26 C 1.53048 * 109.45535 * 275.06599 * 10 9 7 27 27 H 0.97000 * 119.99752 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99913 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.46468 * 35.02204 * 10 9 7 30 30 H 1.08996 * 109.49927 * 61.42731 * 11 10 9 31 31 H 1.09003 * 109.52121 * 301.35021 * 11 10 9 32 32 H 1.09001 * 109.58689 * 185.57543 * 12 11 10 33 33 H 1.08998 * 109.71029 * 65.21509 * 12 11 10 34 34 H 1.09003 * 109.47413 * 59.99470 * 16 14 13 35 35 H 1.08996 * 109.46877 * 299.99706 * 16 14 13 36 36 H 1.08000 * 119.98073 * 0.02562 * 18 17 16 37 37 H 1.07999 * 119.96727 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.99076 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.58522 * 65.93045 * 25 13 12 40 40 H 1.09000 * 109.58476 * 186.35059 * 25 13 12 41 41 H 1.08998 * 109.49559 * 298.56648 * 26 10 9 42 42 H 1.08996 * 109.49466 * 58.63313 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.1803 -4.7522 0.6092 12 6 1.9618 -6.0694 0.6393 13 7 2.4413 -6.3659 -0.7176 14 6 2.1732 -7.5531 -1.2965 15 8 1.5309 -8.3890 -0.6967 16 6 2.6724 -7.8424 -2.6887 17 6 2.2413 -9.2268 -3.0995 18 6 1.1419 -9.3932 -3.9207 19 6 0.7454 -10.6626 -4.2976 20 6 1.4479 -11.7678 -3.8543 21 6 2.5488 -11.6042 -3.0335 22 17 3.4307 -12.9917 -2.4763 23 6 2.9433 -10.3320 -2.6507 24 9 4.0148 -10.1705 -1.8439 25 6 3.2236 -5.3458 -1.4290 26 6 2.4232 -4.0346 -1.4380 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 2.9684 -3.5506 0.5892 30 1 0.2813 -4.8762 0.0055 31 1 0.9008 -4.4718 1.6248 32 1 1.3096 -6.8736 0.9802 33 1 2.8120 -5.9771 1.3151 34 1 3.7607 -7.7814 -2.7045 35 1 2.2575 -7.1114 -3.3826 36 1 0.5923 -8.5309 -4.2681 37 1 -0.1140 -10.7912 -4.9389 38 1 1.1374 -12.7591 -4.1498 39 1 4.1747 -5.1931 -0.9188 40 1 3.4043 -5.6723 -2.4531 41 1 1.5125 -4.1653 -2.0223 42 1 3.0283 -3.2428 -1.8796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997036017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:37 Heat of formation + Delta-G solvation = -52.392336 kcal Electronic energy + Delta-G solvation = -26777.417876 eV Core-core repulsion = 22697.766386 eV Total energy + Delta-G solvation = -4079.651490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.18491 -40.35237 -39.26030 -37.41393 -36.83608 -34.52768 -33.33962 -32.04318 -30.88668 -30.74191 -29.38599 -27.94958 -24.88278 -23.21962 -23.08875 -22.96601 -22.02467 -20.30394 -18.92421 -17.97062 -17.35449 -17.11250 -17.04224 -16.51471 -15.94578 -15.53384 -15.26246 -14.86412 -14.84076 -14.01761 -13.90540 -13.74619 -13.68994 -13.47287 -13.45130 -13.29527 -13.09193 -12.75382 -12.29740 -12.11436 -11.86114 -11.77873 -11.73209 -11.59910 -11.23696 -11.01079 -10.92251 -10.85962 -10.52946 -10.24011 -9.89828 -9.84272 -9.71597 -9.16040 -8.99517 -8.95723 -8.53676 -7.02561 -5.82099 -3.11501 0.63973 0.70517 1.67877 2.61794 2.90575 3.22326 3.39032 3.44726 3.47071 3.77565 4.10377 4.39351 4.51897 4.54183 4.65043 4.74094 4.89626 5.02731 5.12851 5.26692 5.29903 5.31256 5.37463 5.49246 5.50374 5.59403 5.60989 5.68686 5.77327 5.90543 5.93026 5.97431 6.18690 6.30750 6.32457 6.35663 6.46563 6.57355 6.84544 6.98699 7.45335 7.64603 8.17269 8.36111 9.47477 10.04756 10.39305 11.40455 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029172 B = 0.002120 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.594245 B =13203.669697 C =13420.043778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.138 4.138 12 C 0.116 3.884 13 N -0.605 5.605 14 C 0.517 3.483 15 O -0.541 6.541 16 C -0.104 4.104 17 C -0.086 4.086 18 C -0.075 4.075 19 C -0.117 4.117 20 C -0.085 4.085 21 C -0.075 4.075 22 Cl -0.054 7.054 23 C 0.128 3.872 24 F -0.124 7.124 25 C 0.105 3.895 26 C -0.151 4.151 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.229 -23.509 -9.825 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.068 3.932 11 C -0.177 4.177 12 C -0.006 4.006 13 N -0.338 5.338 14 C 0.305 3.695 15 O -0.419 6.419 16 C -0.143 4.143 17 C -0.087 4.087 18 C -0.093 4.093 19 C -0.135 4.135 20 C -0.104 4.104 21 C -0.102 4.102 22 Cl -0.025 7.025 23 C 0.108 3.892 24 F -0.102 7.102 25 C -0.018 4.018 26 C -0.192 4.192 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.139 -23.898 -9.388 26.185 hybrid contribution 0.434 1.013 0.132 1.110 sum 5.573 -22.884 -9.255 25.306 Atomic orbital electron populations 1.69673 1.05130 1.25595 1.57596 1.24759 0.95512 0.97745 1.02957 0.86137 0.78774 0.84165 0.77209 1.20544 1.21885 1.21864 1.19272 0.90990 0.84065 1.42751 0.91103 1.42447 1.05819 0.99714 1.88483 1.20165 0.94482 0.86089 0.92436 1.22200 0.99167 0.94085 1.02267 1.21622 0.98772 0.98067 0.82152 1.48148 1.53808 1.14758 1.17060 1.20269 0.80020 0.81691 0.87547 1.90703 1.40315 1.45939 1.64931 1.20670 1.03644 0.94053 0.95973 1.19364 0.96818 0.93272 0.99295 1.21076 0.94233 0.98357 0.95640 1.21141 1.00238 0.91541 1.00613 1.20973 0.92961 1.00534 0.95948 1.20943 0.98411 0.87258 1.03600 1.98385 1.75009 1.40544 1.88520 1.17169 0.86952 0.92071 0.93048 1.91534 1.52238 1.96176 1.70236 1.22005 0.94612 0.88844 0.96388 1.22756 0.99962 0.94638 1.01819 0.93524 0.78263 0.93392 0.91850 0.90539 0.89387 0.91545 0.87416 0.86844 0.84220 0.84205 0.84038 0.91230 0.90487 0.92134 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.72 -17.33 5.12 -53.38 -0.27 -17.60 16 10 C 0.18 3.28 2.73 -67.89 -0.19 3.10 16 11 C -0.14 -2.22 5.55 -26.61 -0.15 -2.37 16 12 C 0.12 1.65 6.43 -3.71 -0.02 1.62 16 13 N -0.60 -8.10 2.97 -172.50 -0.51 -8.61 16 14 C 0.52 7.11 7.68 -10.99 -0.08 7.03 16 15 O -0.54 -9.32 15.35 5.56 0.09 -9.24 16 16 C -0.10 -1.04 3.90 -29.03 -0.11 -1.15 16 17 C -0.09 -0.91 4.44 -104.56 -0.46 -1.38 16 18 C -0.07 -0.64 9.67 -39.59 -0.38 -1.02 16 19 C -0.12 -0.85 10.04 -39.58 -0.40 -1.25 16 20 C -0.09 -0.69 9.83 -39.56 -0.39 -1.08 16 21 C -0.07 -0.78 6.33 -39.43 -0.25 -1.03 16 22 Cl -0.05 -0.54 28.62 -51.86 -1.48 -2.03 16 23 C 0.13 1.51 7.09 -39.39 -0.28 1.23 16 24 F -0.12 -1.62 16.24 2.25 0.04 -1.59 16 25 C 0.10 1.25 6.37 -3.49 -0.02 1.22 16 26 C -0.15 -2.35 5.67 -26.38 -0.15 -2.50 16 27 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.38 9.92 7.80 -40.82 -0.32 9.60 16 29 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.31 7.01 -51.93 -0.36 0.94 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.11 0.93 7.74 -51.93 -0.40 0.52 16 35 H 0.11 0.87 7.56 -51.93 -0.39 0.48 16 36 H 0.14 0.91 8.04 -52.49 -0.42 0.49 16 37 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.70 5.93 -51.93 -0.31 0.40 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -32.46 366.65 -9.61 -42.07 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.55 Total: 6.10 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -3.13 Total: -4.58 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.06 Total: -53.05 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.46 -9.61 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997036017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.321 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds