Wall clock time and date at job start Sat Apr 11 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00227 * 2 1 4 4 H 1.48501 * 109.47484 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47133 * 300.00441 * 3 2 1 6 6 H 1.48504 * 109.47298 * 60.00065 * 3 2 1 7 7 C 1.38810 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00064 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99991 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00089 * 180.02562 * 9 7 2 11 11 C 1.53040 * 109.46169 * 155.00365 * 10 9 7 12 12 C 1.53187 * 109.31363 * 181.38490 * 11 10 9 13 13 N 1.46934 * 108.77437 * 305.36073 * 12 11 10 14 14 C 1.34777 * 120.62798 * 233.59100 * 13 12 11 15 15 O 1.21282 * 120.00204 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99654 * 180.02562 * 14 13 12 17 17 C 1.50704 * 109.47132 * 179.97438 * 16 14 13 18 18 C 1.38235 * 120.00378 * 99.99783 * 17 16 14 19 19 C 1.38226 * 120.04680 * 180.02562 * 18 17 16 20 20 C 1.38255 * 120.05959 * 359.97438 * 19 18 17 21 21 C 1.38284 * 120.01644 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 120.02475 * 179.97438 * 21 20 19 23 23 C 1.38405 * 120.00396 * 280.22596 * 17 16 14 24 24 F 1.35101 * 120.03290 * 0.02562 * 23 17 16 25 25 C 1.46925 * 118.73650 * 53.86005 * 13 12 11 26 26 C 1.53048 * 109.45535 * 275.06599 * 10 9 7 27 27 H 0.97000 * 119.99752 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99913 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.46468 * 35.02204 * 10 9 7 30 30 H 1.08996 * 109.49927 * 61.42731 * 11 10 9 31 31 H 1.09003 * 109.52121 * 301.35021 * 11 10 9 32 32 H 1.09001 * 109.58689 * 185.57543 * 12 11 10 33 33 H 1.08998 * 109.71029 * 65.21509 * 12 11 10 34 34 H 1.09003 * 109.47413 * 59.99470 * 16 14 13 35 35 H 1.08996 * 109.46877 * 299.99706 * 16 14 13 36 36 H 1.08000 * 119.98073 * 0.02562 * 18 17 16 37 37 H 1.07999 * 119.96727 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.99076 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.58522 * 65.93045 * 25 13 12 40 40 H 1.09000 * 109.58476 * 186.35059 * 25 13 12 41 41 H 1.08998 * 109.49559 * 298.56648 * 26 10 9 42 42 H 1.08996 * 109.49466 * 58.63313 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.1803 -4.7522 0.6092 12 6 1.9618 -6.0694 0.6393 13 7 2.4413 -6.3659 -0.7176 14 6 2.1732 -7.5531 -1.2965 15 8 1.5309 -8.3890 -0.6967 16 6 2.6724 -7.8424 -2.6887 17 6 2.2413 -9.2268 -3.0995 18 6 1.1419 -9.3932 -3.9207 19 6 0.7454 -10.6626 -4.2976 20 6 1.4479 -11.7678 -3.8543 21 6 2.5488 -11.6042 -3.0335 22 17 3.4307 -12.9917 -2.4763 23 6 2.9433 -10.3320 -2.6507 24 9 4.0148 -10.1705 -1.8439 25 6 3.2236 -5.3458 -1.4290 26 6 2.4232 -4.0346 -1.4380 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 2.9684 -3.5506 0.5892 30 1 0.2813 -4.8762 0.0055 31 1 0.9008 -4.4718 1.6248 32 1 1.3096 -6.8736 0.9802 33 1 2.8120 -5.9771 1.3151 34 1 3.7607 -7.7814 -2.7045 35 1 2.2575 -7.1114 -3.3826 36 1 0.5923 -8.5309 -4.2681 37 1 -0.1140 -10.7912 -4.9389 38 1 1.1374 -12.7591 -4.1498 39 1 4.1747 -5.1931 -0.9188 40 1 3.4043 -5.6723 -2.4531 41 1 1.5125 -4.1653 -2.0223 42 1 3.0283 -3.2428 -1.8796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997036017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:37 Heat of formation + Delta-G solvation = -71.026666 kcal Electronic energy + Delta-G solvation = -26778.225921 eV Core-core repulsion = 22697.766386 eV Total energy + Delta-G solvation = -4080.459535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.04031 -41.36595 -40.04074 -38.67196 -37.59833 -36.13164 -34.24088 -33.64865 -32.05869 -31.41560 -31.00897 -28.84468 -26.47768 -24.46112 -24.24816 -23.84871 -23.01164 -21.58550 -20.09164 -19.05531 -18.72283 -18.33359 -17.84998 -17.30597 -16.87241 -16.65312 -16.48975 -16.31527 -15.47300 -15.46413 -15.39835 -15.02400 -14.84721 -14.55305 -14.49279 -14.17610 -14.00019 -13.89707 -13.37365 -13.26410 -13.11267 -12.86954 -12.70380 -12.60192 -12.48239 -12.41568 -12.18039 -12.09797 -12.00006 -11.94103 -11.69055 -11.29579 -11.02080 -10.82839 -9.86349 -9.70846 -9.67424 -8.99311 -7.92365 -5.20823 -0.03447 0.01851 0.95496 1.49145 1.49682 1.58764 1.59475 1.97624 2.47095 2.57695 3.06836 3.37758 3.41571 3.57832 3.79293 3.83140 3.94498 4.01242 4.10017 4.16798 4.19738 4.27992 4.36511 4.42424 4.47370 4.64338 4.66002 4.79122 4.83904 4.86931 4.90666 4.95017 5.04449 5.09665 5.16775 5.29904 5.32181 5.51109 5.55813 5.64215 5.70678 6.29587 6.40994 7.12646 7.35689 8.11713 8.34296 9.31480 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029172 B = 0.002120 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.594245 B =13203.669697 C =13420.043778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.298 1.298 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.739 5.739 10 C 0.172 3.828 11 C -0.126 4.126 12 C 0.123 3.877 13 N -0.607 5.607 14 C 0.514 3.486 15 O -0.581 6.581 16 C -0.099 4.099 17 C -0.101 4.101 18 C -0.079 4.079 19 C -0.109 4.109 20 C -0.085 4.085 21 C -0.091 4.091 22 Cl -0.060 7.060 23 C 0.097 3.903 24 F -0.140 7.140 25 C 0.112 3.888 26 C -0.140 4.140 27 H 0.249 0.751 28 H 0.370 0.630 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.142 0.858 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.165 0.835 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.051 0.949 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.171 -24.307 -11.592 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.226 1.226 7 C -0.363 4.363 8 H 0.097 0.903 9 N -0.378 5.378 10 C 0.064 3.936 11 C -0.165 4.165 12 C 0.000 4.000 13 N -0.339 5.339 14 C 0.303 3.697 15 O -0.461 6.461 16 C -0.138 4.138 17 C -0.103 4.103 18 C -0.097 4.097 19 C -0.127 4.127 20 C -0.103 4.103 21 C -0.118 4.118 22 Cl -0.032 7.032 23 C 0.077 3.923 24 F -0.119 7.119 25 C -0.010 4.010 26 C -0.181 4.181 27 H 0.058 0.942 28 H 0.201 0.799 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.180 0.820 37 H 0.192 0.808 38 H 0.183 0.817 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.070 0.930 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.143 -24.731 -11.169 27.822 hybrid contribution 0.108 1.153 0.682 1.344 sum 6.250 -23.577 -10.487 26.550 Atomic orbital electron populations 1.69829 1.06668 1.25797 1.60024 1.25543 0.96307 1.01063 1.04230 0.85120 0.78431 0.80105 0.76402 1.18738 1.22291 1.22573 1.19660 0.91486 0.85021 1.40148 0.90255 1.42679 1.05398 1.01067 1.88646 1.20431 0.94150 0.84551 0.94516 1.22036 0.98597 0.94488 1.01360 1.21472 0.98883 0.96302 0.83379 1.48231 1.53776 1.15210 1.16684 1.20941 0.79091 0.80968 0.88669 1.90685 1.42126 1.47118 1.66191 1.20740 1.04665 0.94662 0.93768 1.19555 0.97568 0.93093 1.00039 1.21456 0.93505 0.99819 0.94903 1.21580 1.00518 0.90701 0.99869 1.21346 0.91946 1.02144 0.94893 1.21196 0.99330 0.86787 1.04528 1.98375 1.75349 1.40703 1.88731 1.17532 0.87452 0.93213 0.94088 1.91478 1.53113 1.96322 1.70953 1.22064 0.93900 0.86357 0.98685 1.22518 1.00028 0.96573 0.98945 0.94225 0.79860 0.93490 0.92987 0.91305 0.90194 0.90210 0.85847 0.83984 0.82029 0.80849 0.81746 0.89765 0.86758 0.93048 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 3 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.23 -12.25 9.93 84.03 0.83 -11.41 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -35.55 5.12 -322.80 -1.65 -37.21 16 10 C 0.17 6.19 2.73 45.02 0.12 6.31 16 11 C -0.13 -4.02 5.55 30.67 0.17 -3.85 16 12 C 0.12 3.36 6.43 86.36 0.56 3.92 16 13 N -0.61 -15.03 2.97 -818.05 -2.43 -17.45 16 14 C 0.51 13.23 7.68 87.66 0.67 13.90 16 15 O -0.58 -19.66 15.35 -3.04 -0.05 -19.71 16 16 C -0.10 -1.71 3.90 29.10 0.11 -1.60 16 17 C -0.10 -1.95 4.44 -19.82 -0.09 -2.03 16 18 C -0.08 -1.12 9.67 22.27 0.22 -0.90 16 19 C -0.11 -1.24 10.04 22.27 0.22 -1.01 16 20 C -0.08 -1.19 9.83 22.28 0.22 -0.97 16 21 C -0.09 -1.82 6.33 22.36 0.14 -1.68 16 22 Cl -0.06 -1.20 28.62 -2.72 -0.08 -1.28 16 23 C 0.10 2.22 7.09 22.39 0.16 2.38 16 24 F -0.14 -3.68 16.24 44.97 0.73 -2.95 16 25 C 0.11 2.32 6.37 86.51 0.55 2.87 16 26 C -0.14 -4.12 5.67 30.82 0.17 -3.94 16 27 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.37 19.59 7.80 -92.71 -0.72 18.87 16 29 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.08 2.36 7.01 -2.39 -0.02 2.34 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.12 1.74 7.74 -2.39 -0.02 1.72 16 35 H 0.14 1.59 7.56 -2.39 -0.02 1.57 16 36 H 0.16 1.50 8.04 -2.91 -0.02 1.48 16 37 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 38 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.11 1.58 5.93 -2.39 -0.01 1.56 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -72.22 366.65 3.70 -68.52 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.33 Total: 23.46 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 4.53 Total: -2.00 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -3.80 Total: -113.05 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.05 Total: -19.71 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.73 Total: -2.95 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -72.22 3.70 -68.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997036017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.503 kcal (2) G-P(sol) polarization free energy of solvation -72.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds