Wall clock time and date at job start Sat Apr 11 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00219 * 2 1 4 4 H 1.48495 * 109.46980 * 239.99877 * 3 2 1 5 5 H 1.48495 * 109.46885 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46691 * 120.00199 * 3 2 1 7 7 C 1.38807 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00282 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00406 * 179.97438 * 9 7 2 11 11 C 1.53034 * 109.46360 * 204.99893 * 10 9 7 12 12 C 1.53186 * 109.31579 * 178.62594 * 11 10 9 13 13 N 1.46929 * 108.77359 * 54.63589 * 12 11 10 14 14 C 1.34776 * 120.63006 * 126.36622 * 13 12 11 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00035 * 179.97438 * 14 13 12 17 17 C 1.50706 * 109.47294 * 180.02562 * 16 14 13 18 18 C 1.38457 * 120.01938 * 269.73316 * 17 16 14 19 19 F 1.35101 * 120.01945 * 359.97240 * 18 17 16 20 20 C 1.38448 * 119.95624 * 179.74471 * 18 17 16 21 21 C 1.38226 * 120.00413 * 0.52467 * 20 18 17 22 22 C 1.38195 * 120.03668 * 359.72799 * 21 20 18 23 23 C 1.38292 * 120.01791 * 90.00014 * 17 16 14 24 24 Cl 1.73604 * 120.00048 * 359.97438 * 23 17 16 25 25 C 1.46924 * 118.73954 * 306.64444 * 13 12 11 26 26 C 1.52764 * 109.00878 * 53.31017 * 25 13 12 27 27 H 0.97005 * 119.99480 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00165 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.45557 * 324.97729 * 10 9 7 30 30 H 1.09007 * 109.49570 * 58.67757 * 11 10 9 31 31 H 1.08994 * 109.52693 * 298.59900 * 11 10 9 32 32 H 1.09004 * 109.59118 * 294.85411 * 12 11 10 33 33 H 1.08999 * 109.70605 * 174.49515 * 12 11 10 34 34 H 1.09001 * 109.46665 * 60.00498 * 16 14 13 35 35 H 1.09000 * 109.47722 * 300.00830 * 16 14 13 36 36 H 1.08007 * 119.99724 * 180.25429 * 20 18 17 37 37 H 1.08002 * 119.97819 * 179.70758 * 21 20 18 38 38 H 1.08001 * 119.98503 * 180.02562 * 22 21 20 39 39 H 1.09005 * 109.58680 * 173.14186 * 25 13 12 40 40 H 1.08997 * 109.58792 * 293.56535 * 25 13 12 41 41 H 1.08993 * 109.56511 * 185.55241 * 26 25 13 42 42 H 1.08999 * 109.38843 * 65.51080 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 6 1.1798 -4.7520 -0.6112 12 6 1.9611 -6.0693 -0.6422 13 7 2.4414 -6.3662 0.7142 14 6 2.1728 -7.5532 1.2932 15 8 1.5294 -8.3885 0.6939 16 6 2.6729 -7.8430 2.6850 17 6 2.2410 -9.2271 3.0960 18 6 1.0332 -9.4110 3.7475 19 9 0.2414 -8.3496 4.0156 20 6 0.6352 -10.6837 4.1197 21 6 1.4485 -11.7686 3.8507 22 6 2.6564 -11.5844 3.2051 23 6 3.0534 -10.3136 2.8275 24 17 4.5709 -10.0835 2.0163 25 6 3.2147 -5.3422 1.4298 26 6 2.4241 -4.0351 1.4354 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.9679 -3.5502 -0.5922 30 1 0.9002 -4.4709 -1.6267 31 1 0.2809 -4.8763 -0.0076 32 1 2.8110 -5.9743 -1.3181 33 1 1.3107 -6.8744 -0.9840 34 1 2.2591 -7.1117 3.3793 35 1 3.7612 -7.7829 2.7000 36 1 -0.3087 -10.8284 4.6243 37 1 1.1398 -12.7607 4.1455 38 1 3.2909 -12.4327 2.9950 39 1 3.3891 -5.6665 2.4557 40 1 4.1689 -5.1867 0.9264 41 1 3.0300 -3.2439 1.8768 42 1 1.5137 -4.1654 2.0204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997202862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:39 Heat of formation + Delta-G solvation = -51.954426 kcal Electronic energy + Delta-G solvation = -27072.450631 eV Core-core repulsion = 22992.818130 eV Total energy + Delta-G solvation = -4079.632501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.18510 -40.34866 -39.27016 -37.34533 -36.78734 -34.48848 -33.40758 -32.01718 -30.88978 -30.75772 -29.36952 -27.89203 -24.84988 -23.23450 -23.04982 -22.92865 -21.99198 -20.27732 -18.86959 -18.03374 -17.32718 -17.18206 -17.01497 -16.33307 -15.85483 -15.46653 -15.21393 -15.04129 -14.82772 -13.97007 -13.93150 -13.87240 -13.72256 -13.52090 -13.42606 -13.31468 -13.04192 -12.58528 -12.37930 -11.96689 -11.88619 -11.72071 -11.68067 -11.57739 -11.17477 -10.95926 -10.87500 -10.82706 -10.48349 -10.27430 -9.87067 -9.82060 -9.68130 -9.14151 -9.02824 -8.91742 -8.49958 -6.99567 -5.78838 -3.08266 0.63492 0.70278 1.70607 2.66209 2.92614 3.23070 3.41754 3.46313 3.47538 3.91119 4.12950 4.37568 4.46748 4.55057 4.57290 4.81611 4.99006 5.04963 5.09388 5.27839 5.33007 5.33931 5.40766 5.50904 5.53168 5.63293 5.66881 5.70946 5.72672 5.81881 5.94021 6.00410 6.22058 6.34390 6.36679 6.38871 6.50177 6.61434 6.88110 7.02761 7.49047 7.66185 8.21352 8.39396 9.50460 10.08047 10.42741 11.43637 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021450 B = 0.002496 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.078336 B =11215.794653 C =11691.413566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.180 3.820 11 C -0.139 4.139 12 C 0.117 3.883 13 N -0.604 5.604 14 C 0.522 3.478 15 O -0.541 6.541 16 C -0.110 4.110 17 C -0.089 4.089 18 C 0.126 3.874 19 F -0.127 7.127 20 C -0.149 4.149 21 C -0.080 4.080 22 C -0.121 4.121 23 C 0.003 3.997 24 Cl -0.054 7.054 25 C 0.106 3.894 26 C -0.152 4.152 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.011 -24.921 8.698 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.178 4.178 12 C -0.005 4.005 13 N -0.337 5.337 14 C 0.310 3.690 15 O -0.418 6.418 16 C -0.150 4.150 17 C -0.091 4.091 18 C 0.106 3.894 19 F -0.106 7.106 20 C -0.168 4.168 21 C -0.099 4.099 22 C -0.140 4.140 23 C -0.024 4.024 24 Cl -0.025 7.025 25 C -0.017 4.017 26 C -0.193 4.193 27 H 0.066 0.934 28 H 0.217 0.783 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.886 -25.111 8.283 27.324 hybrid contribution 0.139 1.364 0.095 1.374 sum 7.026 -23.747 8.378 26.144 Atomic orbital electron populations 1.69657 1.05132 1.25808 1.57448 1.24754 0.95499 0.97713 1.02941 0.86279 0.78529 0.83608 0.77827 1.21263 1.21711 1.21278 1.19181 0.90921 0.84100 1.42985 0.91224 1.42430 1.05814 0.99685 1.88494 1.20154 0.94445 0.86091 0.92383 1.22205 0.99228 0.94110 1.02258 1.21617 0.98731 0.98056 0.82141 1.48121 1.54136 1.14537 1.16929 1.20138 0.79868 0.81733 0.87280 1.90687 1.40175 1.46083 1.64880 1.20711 1.03977 0.94006 0.96268 1.19154 0.94059 0.95197 1.00684 1.17295 0.88747 0.84247 0.99071 1.91547 1.72511 1.54925 1.91591 1.21238 1.01850 0.90839 1.02850 1.20941 0.92968 0.98959 0.96999 1.21071 0.97640 0.95450 0.99842 1.20499 0.89257 0.93943 0.98678 1.98385 1.29177 1.97237 1.77673 1.21814 0.94759 0.88855 0.96316 1.22611 1.00155 0.94691 1.01893 0.93428 0.78252 0.93399 0.90533 0.91836 0.91550 0.89383 0.87089 0.86993 0.83978 0.83987 0.84201 0.90603 0.91267 0.90506 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.72 -17.72 5.12 -53.38 -0.27 -18.00 16 10 C 0.18 3.41 2.73 -67.89 -0.19 3.22 16 11 C -0.14 -2.32 5.55 -26.62 -0.15 -2.47 16 12 C 0.12 1.71 6.44 -3.71 -0.02 1.69 16 13 N -0.60 -8.56 2.98 -173.03 -0.52 -9.07 16 14 C 0.52 7.65 7.69 -10.99 -0.08 7.56 16 15 O -0.54 -9.57 15.45 5.56 0.09 -9.49 16 16 C -0.11 -1.27 3.61 -29.03 -0.10 -1.37 16 17 C -0.09 -1.03 4.38 -104.52 -0.46 -1.49 16 18 C 0.13 1.45 7.24 -39.42 -0.29 1.16 16 19 F -0.13 -1.65 16.48 2.25 0.04 -1.61 16 20 C -0.15 -1.30 10.03 -39.51 -0.40 -1.69 16 21 C -0.08 -0.57 10.04 -39.60 -0.40 -0.97 16 22 C -0.12 -0.98 9.83 -39.54 -0.39 -1.37 16 23 C 0.00 0.03 6.31 -39.51 -0.25 -0.22 16 24 Cl -0.05 -0.54 27.30 -51.86 -1.42 -1.95 16 25 C 0.11 1.35 6.31 -3.93 -0.02 1.33 16 26 C -0.15 -2.51 5.64 -26.83 -0.15 -2.66 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 29 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 34 H 0.11 1.18 7.17 -51.93 -0.37 0.81 16 35 H 0.11 1.09 6.71 -51.93 -0.35 0.74 16 36 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -32.52 364.35 -9.51 -42.03 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.48 Total: 7.21 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -3.14 Total: -4.41 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.06 Total: -54.33 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.42 Total: -1.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.52 -9.51 -42.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997202862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.922 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds