Wall clock time and date at job start Sat Apr 11 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00334 * 2 1 4 4 H 1.48500 * 109.47457 * 270.00641 * 3 2 1 5 5 H 1.48510 * 109.46786 * 30.00481 * 3 2 1 6 6 H 1.48497 * 109.47261 * 150.00205 * 3 2 1 7 7 C 1.38814 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99852 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00357 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00289 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.52625 * 325.08065 * 10 9 7 12 12 C 1.53046 * 109.49651 * 204.99988 * 10 9 7 13 13 C 1.53039 * 109.52798 * 178.67721 * 12 10 9 14 14 C 1.53195 * 109.31257 * 61.36716 * 13 12 10 15 15 N 1.46919 * 108.77845 * 305.36660 * 14 13 12 16 16 C 1.34771 * 120.63234 * 233.62780 * 15 14 13 17 17 O 1.21291 * 120.00118 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00281 * 0.02562 * 16 15 14 19 19 C 1.50692 * 109.47368 * 179.97438 * 18 16 15 20 20 C 1.38460 * 120.01852 * 90.00232 * 19 18 16 21 21 F 1.35101 * 120.02134 * 359.97438 * 20 19 18 22 22 C 1.38449 * 119.96281 * 179.97438 * 20 19 18 23 23 C 1.38225 * 120.00043 * 0.02562 * 22 20 19 24 24 C 1.38206 * 120.04029 * 359.97438 * 23 22 20 25 25 C 1.38291 * 120.02208 * 269.72219 * 19 18 16 26 26 Cl 1.73606 * 119.99834 * 0.02562 * 25 19 18 27 27 C 1.46931 * 118.73612 * 53.60997 * 15 14 13 28 28 H 0.97000 * 119.99878 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99598 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.46115 * 58.66174 * 12 10 9 31 31 H 1.09004 * 109.45806 * 298.69059 * 12 10 9 32 32 H 1.08997 * 109.50134 * 181.32407 * 13 12 10 33 33 H 1.09006 * 109.49908 * 301.38992 * 13 12 10 34 34 H 1.08997 * 109.58182 * 65.15696 * 14 13 12 35 35 H 1.09000 * 109.58502 * 185.57641 * 14 13 12 36 36 H 1.09000 * 109.47185 * 300.00337 * 18 16 15 37 37 H 1.08995 * 109.46812 * 59.99667 * 18 16 15 38 38 H 1.07997 * 120.00210 * 179.97438 * 22 20 19 39 39 H 1.08001 * 119.98271 * 180.02562 * 23 22 20 40 40 H 1.08002 * 119.98478 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.58959 * 66.17523 * 27 15 14 42 42 H 1.09003 * 109.58181 * 186.46006 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5649 -3.2075 0.5874 12 6 5.5000 -2.2595 0.6081 13 6 6.2536 -3.5911 0.6387 14 6 6.4274 -4.1079 -0.7930 15 7 5.1075 -4.1761 -1.4347 16 6 4.6806 -5.3190 -2.0072 17 8 3.5890 -5.3624 -2.5342 18 6 5.5593 -6.5432 -1.9927 19 6 4.8539 -7.6763 -2.6921 20 6 5.0183 -7.8588 -4.0548 21 9 5.8109 -7.0207 -4.7581 22 6 4.3701 -8.9005 -4.6961 23 6 3.5589 -9.7574 -3.9762 24 6 3.3946 -9.5754 -2.6161 25 6 4.0465 -8.5380 -1.9725 26 17 3.8448 -8.3142 -0.2627 27 6 4.2617 -2.9747 -1.4400 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3622 -0.0007 30 1 5.3965 -1.8774 1.6236 31 1 6.0557 -1.5415 0.0048 32 1 7.2330 -3.4446 1.0940 33 1 5.6863 -4.3169 1.2215 34 1 7.0705 -3.4277 -1.3514 35 1 6.8748 -5.1016 -0.7709 36 1 6.4952 -6.3247 -2.5069 37 1 5.7691 -6.8275 -0.9616 38 1 4.4976 -9.0432 -5.7590 39 1 3.0536 -10.5702 -4.4768 40 1 2.7609 -10.2457 -2.0544 41 1 4.7282 -2.2021 -2.0512 42 1 3.2809 -3.2202 -1.8473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000773320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:00 Heat of formation + Delta-G solvation = -46.691198 kcal Electronic energy + Delta-G solvation = -27387.519546 eV Core-core repulsion = 23308.115275 eV Total energy + Delta-G solvation = -4079.404270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.17093 -40.26149 -39.20848 -37.33727 -36.67756 -34.63002 -33.24735 -32.28372 -31.31450 -30.69922 -29.18769 -27.77963 -25.00268 -23.82735 -23.14624 -22.32716 -21.73492 -20.32565 -18.87690 -17.97869 -17.55772 -17.18206 -17.10784 -16.28330 -15.80859 -15.40732 -15.21388 -14.98685 -14.64346 -14.28154 -14.18484 -13.83143 -13.70901 -13.61761 -13.28534 -13.01804 -12.97721 -12.58349 -12.52083 -12.33668 -11.86100 -11.73407 -11.59321 -11.58566 -11.23392 -11.05374 -10.92857 -10.73297 -10.64530 -10.28006 -9.89963 -9.72404 -9.57510 -9.13891 -9.02735 -8.95884 -8.37946 -7.28764 -5.76210 -3.13633 0.70711 0.76839 1.81451 2.79421 3.00425 3.30651 3.37207 3.39667 3.45348 3.95750 4.18143 4.42978 4.53479 4.58527 4.61017 4.79259 4.88907 4.99472 5.03662 5.14439 5.16473 5.27605 5.37705 5.45057 5.48844 5.59196 5.70252 5.72079 5.78494 5.80645 5.89079 5.90535 6.02820 6.07542 6.23871 6.38664 6.41804 6.66448 6.74102 6.91479 7.61700 7.99851 8.36802 8.42907 9.19657 9.91214 10.09709 11.41865 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.003052 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.734815 B = 9172.832563 C = 9425.913646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.059 0.941 12 C -0.129 4.129 13 C -0.130 4.130 14 C 0.105 3.895 15 N -0.607 5.607 16 C 0.517 3.483 17 O -0.528 6.528 18 C -0.109 4.109 19 C -0.089 4.089 20 C 0.124 3.876 21 F -0.130 7.130 22 C -0.149 4.149 23 C -0.080 4.080 24 C -0.120 4.120 25 C 0.003 3.997 26 Cl -0.050 7.050 27 C 0.094 3.906 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.059 0.941 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.971 -20.892 -4.607 27.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.385 5.385 10 C 0.063 3.937 11 H 0.077 0.923 12 C -0.168 4.168 13 C -0.169 4.169 14 C -0.018 4.018 15 N -0.341 5.341 16 C 0.303 3.697 17 O -0.404 6.404 18 C -0.148 4.148 19 C -0.091 4.091 20 C 0.105 3.895 21 F -0.109 7.109 22 C -0.168 4.168 23 C -0.098 4.098 24 C -0.138 4.138 25 C -0.023 4.023 26 Cl -0.021 7.021 27 C -0.030 4.030 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.078 0.922 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.115 -20.884 -4.744 26.802 hybrid contribution 0.701 1.535 0.002 1.688 sum 16.816 -19.350 -4.742 26.071 Atomic orbital electron populations 1.69708 1.05123 1.25833 1.57147 1.24679 0.95217 0.97176 1.01812 0.86560 0.79196 0.85030 0.77788 1.21046 1.21710 1.20304 1.19104 0.80388 0.94866 1.43381 0.89077 1.42720 1.04140 1.01722 1.89878 1.20456 0.90929 0.89473 0.92870 0.92281 1.21863 0.96725 0.96408 1.01778 1.21877 1.00815 0.98221 0.95949 1.21759 0.84491 1.01661 0.93878 1.48192 1.18069 1.11740 1.56079 1.20162 0.87079 0.83722 0.78687 1.90746 1.21498 1.83710 1.44450 1.20711 0.99280 0.91738 1.03105 1.19134 1.00332 0.97392 0.92281 1.17261 0.93420 0.90353 0.88507 1.91516 1.71284 1.69886 1.78194 1.21208 0.98976 0.95276 1.01367 1.20944 0.96992 0.98807 0.93107 1.21098 1.00117 0.97648 0.94980 1.20531 0.98752 0.96923 0.86144 1.98397 1.95994 1.96724 1.10976 1.22685 0.95688 0.84195 1.00475 0.93013 0.80480 0.91333 0.92138 0.90872 0.91351 0.91289 0.90293 0.87519 0.87074 0.84058 0.83988 0.84126 0.92225 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.67 13.97 55.49 0.78 -28.89 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 22.13 27.73 -169.99 -4.71 17.42 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.25 -7.08 10.41 -15.06 -0.16 -7.24 16 8 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 9 N -0.74 -17.53 4.93 -53.31 -0.26 -17.79 16 10 C 0.17 3.34 2.92 -67.81 -0.20 3.14 16 11 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 12 C -0.13 -1.89 5.35 -26.69 -0.14 -2.03 16 13 C -0.13 -1.43 6.08 -26.61 -0.16 -1.59 16 14 C 0.11 1.13 6.34 -3.71 -0.02 1.11 16 15 N -0.61 -9.18 2.97 -172.77 -0.51 -9.70 16 16 C 0.52 8.28 7.69 -10.99 -0.08 8.20 16 17 O -0.53 -10.84 15.45 5.55 0.09 -10.76 16 18 C -0.11 -1.27 3.61 -29.04 -0.10 -1.37 16 19 C -0.09 -1.10 4.38 -104.52 -0.46 -1.55 16 20 C 0.12 1.47 7.24 -39.42 -0.29 1.18 16 21 F -0.13 -1.63 16.48 2.25 0.04 -1.60 16 22 C -0.15 -1.39 10.03 -39.51 -0.40 -1.78 16 23 C -0.08 -0.64 10.04 -39.60 -0.40 -1.04 16 24 C -0.12 -1.12 9.83 -39.54 -0.39 -1.50 16 25 C 0.00 0.04 6.31 -39.51 -0.25 -0.21 16 26 Cl -0.05 -0.58 27.29 -51.86 -1.42 -2.00 16 27 C 0.09 1.76 6.02 -3.71 -0.02 1.73 16 28 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 29 H 0.36 8.29 5.66 -40.82 -0.23 8.06 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 36 H 0.11 1.02 7.44 -51.93 -0.39 0.63 16 37 H 0.11 1.10 6.44 -51.93 -0.33 0.76 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 2.15 7.00 -51.93 -0.36 1.79 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -35.04 361.27 -9.17 -44.21 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.44 Total: 6.51 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -3.17 Total: -2.85 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.00 Total: -56.38 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.42 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.42 Total: -2.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.04 -9.17 -44.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000773320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.484 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds