Wall clock time and date at job start Sat Apr 11 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00180 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00423 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 H 1.09000 * 109.50107 * 35.06544 * 10 9 7 12 12 C 1.53040 * 109.49604 * 155.16441 * 10 9 7 13 13 C 1.53041 * 109.53799 * 181.31283 * 12 10 9 14 14 C 1.53190 * 109.31396 * 298.63387 * 13 12 10 15 15 N 1.46933 * 108.77356 * 54.63383 * 14 13 12 16 16 C 1.34777 * 120.62749 * 126.41665 * 15 14 13 17 17 O 1.21279 * 119.99718 * 179.97438 * 16 15 14 18 18 C 1.50701 * 120.00065 * 359.97231 * 16 15 14 19 19 C 1.50702 * 109.46933 * 180.02562 * 18 16 15 20 20 C 1.38460 * 120.01808 * 269.73027 * 19 18 16 21 21 F 1.35102 * 120.01991 * 359.97438 * 20 19 18 22 22 C 1.38451 * 119.96162 * 179.72250 * 20 19 18 23 23 C 1.38220 * 119.99934 * 0.52713 * 22 20 19 24 24 C 1.38204 * 120.03770 * 359.76939 * 23 22 20 25 25 C 1.38291 * 120.02035 * 89.99918 * 19 18 16 26 26 Cl 1.73599 * 119.99810 * 0.02695 * 25 19 18 27 27 C 1.46924 * 118.73987 * 306.39209 * 15 14 13 28 28 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 30 30 H 1.09003 * 109.46147 * 301.33233 * 12 10 9 31 31 H 1.09002 * 109.45875 * 61.29129 * 12 10 9 32 32 H 1.09002 * 109.49838 * 178.68006 * 13 12 10 33 33 H 1.08996 * 109.52048 * 58.60240 * 13 12 10 34 34 H 1.09004 * 109.58699 * 294.85075 * 14 13 12 35 35 H 1.08993 * 109.58608 * 174.41810 * 14 13 12 36 36 H 1.08992 * 109.47449 * 300.00465 * 18 16 15 37 37 H 1.08998 * 109.46882 * 60.00721 * 18 16 15 38 38 H 1.07997 * 119.99953 * 180.26926 * 22 20 19 39 39 H 1.08005 * 119.98144 * 179.74418 * 23 22 20 40 40 H 1.08001 * 119.97976 * 179.97438 * 24 23 22 41 41 H 1.09005 * 109.58722 * 293.82411 * 27 15 14 42 42 H 1.08994 * 109.70468 * 173.46949 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 1 2.9709 -3.5529 0.5794 12 6 1.1824 -4.7553 0.5999 13 6 1.9586 -6.0740 0.6236 14 6 2.3157 -6.4776 -0.8104 15 7 3.0334 -5.3662 -1.4496 16 6 4.2349 -5.5662 -2.0265 17 8 4.8172 -4.6407 -2.5513 18 6 4.8549 -6.9398 -2.0196 19 6 6.1869 -6.8932 -2.7228 20 6 6.2592 -7.1266 -4.0857 21 9 5.1357 -7.3968 -4.7857 22 6 7.4829 -7.0779 -4.7316 23 6 8.6328 -6.8071 -4.0141 24 6 8.5614 -6.5802 -2.6527 25 6 7.3385 -6.6228 -2.0064 26 17 7.2499 -6.3376 -0.2963 27 6 2.4163 -4.0328 -1.4483 28 1 -0.4851 0.8400 0.0004 29 1 0.3555 -2.3881 0.0038 30 1 0.9057 -4.4785 1.6173 31 1 0.2812 -4.8751 -0.0014 32 1 1.3429 -6.8506 1.0775 33 1 2.8723 -5.9485 1.2044 34 1 1.4036 -6.6920 -1.3675 35 1 2.9524 -7.3620 -0.7933 36 1 4.9991 -7.2681 -0.9903 37 1 4.1958 -7.6384 -2.5349 38 1 7.5394 -7.2556 -5.7954 39 1 9.5877 -6.7733 -4.5176 40 1 9.4606 -6.3691 -2.0929 41 1 1.5124 -4.0479 -2.0574 42 1 3.1173 -3.3030 -1.8529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000773321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:02 Heat of formation + Delta-G solvation = -51.410612 kcal Electronic energy + Delta-G solvation = -27357.620871 eV Core-core repulsion = 23278.011951 eV Total energy + Delta-G solvation = -4079.608920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.16989 -40.23042 -39.18640 -37.24605 -36.68825 -34.48428 -33.23908 -32.23923 -31.15416 -30.70716 -28.82453 -27.58421 -24.92367 -23.95905 -23.15259 -22.33225 -21.87825 -20.19365 -18.79742 -17.97997 -17.18317 -17.11442 -17.05871 -16.27394 -15.80804 -15.36684 -15.20425 -14.98935 -14.62096 -14.18368 -13.98233 -13.84972 -13.66483 -13.51635 -13.41531 -13.07777 -12.92866 -12.53906 -12.39543 -12.21156 -11.84020 -11.69268 -11.59853 -11.34034 -11.12426 -10.99093 -10.84345 -10.65280 -10.57150 -10.16053 -9.80866 -9.78119 -9.60943 -9.10658 -9.01731 -8.96512 -8.31959 -6.98404 -5.77575 -3.07161 0.70115 0.76097 1.80477 2.81989 3.01835 3.34141 3.45568 3.51888 3.54492 3.95373 4.18547 4.42944 4.52694 4.59121 4.64964 4.86905 4.91696 5.03862 5.07303 5.16070 5.26066 5.29447 5.49499 5.53835 5.56899 5.65303 5.71215 5.78327 5.80304 5.87996 5.93950 6.04970 6.17764 6.22322 6.36117 6.40606 6.50919 6.75175 6.84740 7.02941 7.66914 7.73899 8.38728 8.42077 9.52628 10.06604 10.41937 11.44796 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.003175 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.893816 B = 8815.626646 C = 9425.466973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.605 5.605 16 C 0.517 3.483 17 O -0.532 6.532 18 C -0.109 4.109 19 C -0.088 4.088 20 C 0.124 3.876 21 F -0.130 7.130 22 C -0.149 4.149 23 C -0.081 4.081 24 C -0.120 4.120 25 C 0.003 3.997 26 Cl -0.051 7.051 27 C 0.093 3.907 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.061 0.939 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.829 -22.405 -4.653 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.169 4.169 14 C -0.018 4.018 15 N -0.339 5.339 16 C 0.303 3.697 17 O -0.409 6.409 18 C -0.149 4.149 19 C -0.091 4.091 20 C 0.105 3.895 21 F -0.108 7.108 22 C -0.168 4.168 23 C -0.099 4.099 24 C -0.139 4.139 25 C -0.024 4.024 26 Cl -0.021 7.021 27 C -0.031 4.031 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.079 0.921 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.187 -21.709 -4.787 26.371 hybrid contribution -0.219 0.926 -0.024 0.952 sum 13.967 -20.782 -4.811 25.498 Atomic orbital electron populations 1.69670 1.05113 1.25627 1.57643 1.24737 0.95507 0.97725 1.02713 0.86128 0.78994 0.84036 0.77170 1.20428 1.21787 1.21831 1.19322 0.91133 0.83975 1.42769 0.91012 1.42385 1.05804 0.99612 1.88089 1.20489 0.94893 0.86429 0.92430 0.93168 1.21821 0.98696 0.94089 1.01823 1.21883 1.00963 0.98269 0.95759 1.21762 0.97051 0.88928 0.94023 1.48238 1.18825 1.11087 1.55759 1.20150 0.81118 0.89717 0.78690 1.90724 1.61399 1.43881 1.44860 1.20720 0.93515 0.97606 1.03047 1.19149 0.94736 1.02861 0.92306 1.17267 0.82845 1.00877 0.88552 1.91519 1.49968 1.90992 1.78363 1.21208 0.91070 1.03190 1.01349 1.20938 0.98383 0.97474 0.93106 1.21089 0.96509 1.01349 0.94950 1.20524 0.93960 1.01763 0.86117 1.98396 1.98545 1.94232 1.10964 1.22774 0.97750 0.81565 1.01000 0.93531 0.78080 0.91406 0.92014 0.90954 0.91573 0.91251 0.90429 0.87095 0.87508 0.84058 0.84008 0.84166 0.92115 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.24 -6.81 9.93 -15.06 -0.15 -6.96 16 8 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.72 -18.04 5.13 -53.31 -0.27 -18.32 16 10 C 0.17 3.39 2.92 -67.81 -0.20 3.19 16 11 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 12 C -0.13 -1.98 5.35 -26.69 -0.14 -2.12 16 13 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 14 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 15 N -0.61 -9.46 2.97 -172.77 -0.51 -9.97 16 16 C 0.52 8.40 7.69 -10.99 -0.08 8.31 16 17 O -0.53 -10.94 15.45 5.56 0.09 -10.85 16 18 C -0.11 -1.30 3.61 -29.03 -0.10 -1.40 16 19 C -0.09 -1.09 4.38 -104.52 -0.46 -1.55 16 20 C 0.12 1.47 7.24 -39.42 -0.29 1.19 16 21 F -0.13 -1.64 16.48 2.25 0.04 -1.60 16 22 C -0.15 -1.38 10.03 -39.51 -0.40 -1.78 16 23 C -0.08 -0.64 10.04 -39.60 -0.40 -1.04 16 24 C -0.12 -1.11 9.83 -39.54 -0.39 -1.50 16 25 C 0.00 0.04 6.31 -39.51 -0.25 -0.21 16 26 Cl -0.05 -0.59 27.29 -51.86 -1.42 -2.00 16 27 C 0.09 1.81 6.01 -3.71 -0.02 1.79 16 28 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.39 10.14 7.80 -40.82 -0.32 9.82 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 36 H 0.11 1.12 6.45 -51.93 -0.34 0.79 16 37 H 0.11 1.05 7.43 -51.93 -0.39 0.67 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.09 2.07 7.01 -51.93 -0.36 1.70 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -33.81 364.40 -9.53 -43.33 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.48 Total: 6.53 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.16 Total: -3.00 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.06 Total: -55.82 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.42 Total: -2.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.81 -9.53 -43.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000773321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.077 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds