Wall clock time and date at job start Sat Apr 11 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00180 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00423 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 H 1.09000 * 109.50107 * 35.06544 * 10 9 7 12 12 C 1.53040 * 109.49604 * 155.16441 * 10 9 7 13 13 C 1.53041 * 109.53799 * 181.31283 * 12 10 9 14 14 C 1.53190 * 109.31396 * 298.63387 * 13 12 10 15 15 N 1.46933 * 108.77356 * 54.63383 * 14 13 12 16 16 C 1.34777 * 120.62749 * 126.41665 * 15 14 13 17 17 O 1.21279 * 119.99718 * 179.97438 * 16 15 14 18 18 C 1.50701 * 120.00065 * 359.97231 * 16 15 14 19 19 C 1.50702 * 109.46933 * 180.02562 * 18 16 15 20 20 C 1.38460 * 120.01808 * 269.73027 * 19 18 16 21 21 F 1.35102 * 120.01991 * 359.97438 * 20 19 18 22 22 C 1.38451 * 119.96162 * 179.72250 * 20 19 18 23 23 C 1.38220 * 119.99934 * 0.52713 * 22 20 19 24 24 C 1.38204 * 120.03770 * 359.76939 * 23 22 20 25 25 C 1.38291 * 120.02035 * 89.99918 * 19 18 16 26 26 Cl 1.73599 * 119.99810 * 0.02695 * 25 19 18 27 27 C 1.46924 * 118.73987 * 306.39209 * 15 14 13 28 28 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 30 30 H 1.09003 * 109.46147 * 301.33233 * 12 10 9 31 31 H 1.09002 * 109.45875 * 61.29129 * 12 10 9 32 32 H 1.09002 * 109.49838 * 178.68006 * 13 12 10 33 33 H 1.08996 * 109.52048 * 58.60240 * 13 12 10 34 34 H 1.09004 * 109.58699 * 294.85075 * 14 13 12 35 35 H 1.08993 * 109.58608 * 174.41810 * 14 13 12 36 36 H 1.08992 * 109.47449 * 300.00465 * 18 16 15 37 37 H 1.08998 * 109.46882 * 60.00721 * 18 16 15 38 38 H 1.07997 * 119.99953 * 180.26926 * 22 20 19 39 39 H 1.08005 * 119.98144 * 179.74418 * 23 22 20 40 40 H 1.08001 * 119.97976 * 179.97438 * 24 23 22 41 41 H 1.09005 * 109.58722 * 293.82411 * 27 15 14 42 42 H 1.08994 * 109.70468 * 173.46949 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 1 2.9709 -3.5529 0.5794 12 6 1.1824 -4.7553 0.5999 13 6 1.9586 -6.0740 0.6236 14 6 2.3157 -6.4776 -0.8104 15 7 3.0334 -5.3662 -1.4496 16 6 4.2349 -5.5662 -2.0265 17 8 4.8172 -4.6407 -2.5513 18 6 4.8549 -6.9398 -2.0196 19 6 6.1869 -6.8932 -2.7228 20 6 6.2592 -7.1266 -4.0857 21 9 5.1357 -7.3968 -4.7857 22 6 7.4829 -7.0779 -4.7316 23 6 8.6328 -6.8071 -4.0141 24 6 8.5614 -6.5802 -2.6527 25 6 7.3385 -6.6228 -2.0064 26 17 7.2499 -6.3376 -0.2963 27 6 2.4163 -4.0328 -1.4483 28 1 -0.4851 0.8400 0.0004 29 1 0.3555 -2.3881 0.0038 30 1 0.9057 -4.4785 1.6173 31 1 0.2812 -4.8751 -0.0014 32 1 1.3429 -6.8506 1.0775 33 1 2.8723 -5.9485 1.2044 34 1 1.4036 -6.6920 -1.3675 35 1 2.9524 -7.3620 -0.7933 36 1 4.9991 -7.2681 -0.9903 37 1 4.1958 -7.6384 -2.5349 38 1 7.5394 -7.2556 -5.7954 39 1 9.5877 -6.7733 -4.5176 40 1 9.4606 -6.3691 -2.0929 41 1 1.5124 -4.0479 -2.0574 42 1 3.1173 -3.3030 -1.8529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000773321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:02 Heat of formation + Delta-G solvation = -72.029155 kcal Electronic energy + Delta-G solvation = -27358.514958 eV Core-core repulsion = 23278.011951 eV Total energy + Delta-G solvation = -4080.503007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.04479 -41.39995 -40.09406 -38.63342 -37.51809 -36.23607 -34.31206 -33.70968 -32.74215 -31.44854 -30.34489 -28.76587 -26.16098 -25.89069 -23.92315 -23.32848 -23.17299 -21.62157 -20.05487 -19.14915 -18.79016 -18.36174 -17.94743 -17.22727 -16.90305 -16.64805 -16.36455 -16.25954 -15.78285 -15.59857 -15.46195 -15.22135 -14.85453 -14.66043 -14.45907 -14.16625 -14.05389 -13.89709 -13.67526 -13.35001 -13.11024 -12.93783 -12.69784 -12.52887 -12.47429 -12.38896 -12.19606 -12.05706 -11.92060 -11.88302 -11.68506 -11.35866 -11.14865 -10.94060 -9.88415 -9.75799 -9.74038 -9.03322 -8.01020 -5.30159 -0.05859 -0.00736 0.98369 1.41783 1.43223 1.53239 1.57825 1.95728 2.43326 2.51820 3.18548 3.32075 3.33720 3.58136 3.66562 3.75984 3.87182 4.00552 4.05378 4.18889 4.21814 4.28989 4.33121 4.36685 4.37588 4.48671 4.60474 4.74199 4.82595 4.87349 4.89869 5.01139 5.04124 5.07426 5.13449 5.19302 5.37290 5.41642 5.45367 5.56472 5.69584 6.22036 6.43632 7.14139 7.28554 8.00652 8.26150 9.21864 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.003175 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.893816 B = 8815.626646 C = 9425.466973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.063 0.937 9 N -0.730 5.730 10 C 0.168 3.832 11 H 0.030 0.970 12 C -0.118 4.118 13 C -0.121 4.121 14 C 0.098 3.902 15 N -0.605 5.605 16 C 0.510 3.490 17 O -0.584 6.584 18 C -0.098 4.098 19 C -0.112 4.112 20 C 0.099 3.901 21 F -0.141 7.141 22 C -0.149 4.149 23 C -0.070 4.070 24 C -0.122 4.122 25 C -0.015 4.015 26 Cl -0.060 7.060 27 C 0.109 3.891 28 H 0.253 0.747 29 H 0.378 0.622 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.165 0.835 39 H 0.181 0.819 40 H 0.162 0.838 41 H 0.056 0.944 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.248 -24.796 -4.811 29.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.081 0.919 9 N -0.370 5.370 10 C 0.059 3.941 11 H 0.048 0.952 12 C -0.156 4.156 13 C -0.159 4.159 14 C -0.023 4.023 15 N -0.338 5.338 16 C 0.299 3.701 17 O -0.464 6.464 18 C -0.137 4.137 19 C -0.114 4.114 20 C 0.080 3.920 21 F -0.119 7.119 22 C -0.168 4.168 23 C -0.088 4.088 24 C -0.141 4.141 25 C -0.042 4.042 26 Cl -0.031 7.031 27 C -0.017 4.017 28 H 0.062 0.938 29 H 0.210 0.790 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.182 0.818 39 H 0.198 0.802 40 H 0.179 0.821 41 H 0.074 0.926 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.618 -24.172 -4.928 29.198 hybrid contribution -0.578 1.611 -0.017 1.712 sum 15.040 -22.561 -4.945 27.562 Atomic orbital electron populations 1.69794 1.06290 1.26124 1.59127 1.25467 0.96389 1.00736 1.03346 0.85176 0.77987 0.80206 0.77040 1.19918 1.21777 1.21270 1.19533 0.90963 0.85525 1.41627 0.91882 1.42519 1.05531 1.00632 1.88284 1.20643 0.94605 0.86109 0.92787 0.95223 1.21739 0.98484 0.94521 1.00904 1.21875 1.00920 0.96806 0.96335 1.22166 0.98222 0.88446 0.93450 1.48293 1.19046 1.10523 1.55943 1.20970 0.80665 0.91005 0.77420 1.90691 1.62737 1.45950 1.47048 1.20703 0.93750 0.94695 1.04600 1.19274 0.95032 1.04219 0.92839 1.17609 0.83492 1.02229 0.88712 1.91483 1.50665 1.91271 1.78516 1.21596 0.90488 1.02062 1.02647 1.21412 0.99540 0.95292 0.92541 1.21477 0.96469 1.00345 0.95792 1.20759 0.94798 1.02751 0.85861 1.98385 1.98595 1.94389 1.11728 1.22175 0.96475 0.83221 0.99800 0.93785 0.78988 0.92023 0.91464 0.86898 0.91807 0.89539 0.86588 0.85188 0.85193 0.81772 0.80157 0.82080 0.92560 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.67 13.06 21.65 0.28 -59.39 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 48.17 29.55 68.60 2.03 50.20 16 4 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.24 -14.30 9.93 84.03 0.83 -13.47 16 8 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.73 -37.98 5.13 -322.57 -1.65 -39.64 16 10 C 0.17 6.95 2.92 45.07 0.13 7.08 16 11 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 12 C -0.12 -3.60 5.35 30.62 0.16 -3.43 16 13 C -0.12 -2.49 6.08 30.67 0.19 -2.30 16 14 C 0.10 1.94 6.34 86.36 0.55 2.49 16 15 N -0.61 -18.64 2.97 -818.90 -2.43 -21.07 16 16 C 0.51 16.57 7.69 87.66 0.67 17.24 16 17 O -0.58 -24.93 15.45 -3.03 -0.05 -24.97 16 18 C -0.10 -2.19 3.61 29.10 0.10 -2.08 16 19 C -0.11 -2.65 4.38 -19.80 -0.09 -2.73 16 20 C 0.10 2.25 7.24 22.37 0.16 2.41 16 21 F -0.14 -3.46 16.48 44.97 0.74 -2.72 16 22 C -0.15 -2.45 10.03 22.32 0.22 -2.22 16 23 C -0.07 -0.90 10.04 22.26 0.22 -0.68 16 24 C -0.12 -2.00 9.83 22.30 0.22 -1.78 16 25 C -0.01 -0.33 6.31 22.32 0.14 -0.18 16 26 Cl -0.06 -1.34 27.29 -2.72 -0.07 -1.42 16 27 C 0.11 4.39 6.01 86.36 0.52 4.91 16 28 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.38 20.55 7.80 -92.70 -0.72 19.83 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.12 1.47 5.93 -2.39 -0.01 1.45 16 36 H 0.13 2.34 6.45 -2.39 -0.02 2.32 16 37 H 0.13 2.24 7.43 -2.39 -0.02 2.22 16 38 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 40 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 41 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 42 H 0.05 2.24 7.01 -2.39 -0.02 2.22 16 Total: -1.00 -78.00 364.40 3.69 -74.31 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.33 Total: 22.94 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 4.51 Total: 1.77 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -3.80 Total: -120.10 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.74 Total: -2.72 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.07 Total: -1.42 kcal Total: -78.00 3.69 -74.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000773321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.281 kcal (2) G-P(sol) polarization free energy of solvation -77.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds