Wall clock time and date at job start Sat Apr 11 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99962 * 2 1 4 4 H 1.48503 * 109.46879 * 269.99667 * 3 2 1 5 5 H 1.48503 * 109.47156 * 29.99553 * 3 2 1 6 6 H 1.48503 * 109.47184 * 149.99825 * 3 2 1 7 7 C 1.38817 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00433 * 197.36169 * 7 2 1 9 9 N 1.36937 * 119.99517 * 17.36530 * 7 2 1 10 10 C 1.46928 * 120.63152 * 207.66230 * 9 7 2 11 11 C 1.53189 * 108.77820 * 233.63448 * 10 9 7 12 12 C 1.53042 * 109.31183 * 305.36531 * 11 10 9 13 13 C 1.53038 * 109.53851 * 61.36513 * 12 11 10 14 14 H 1.08999 * 109.52705 * 58.60397 * 13 12 11 15 15 N 1.46508 * 109.49907 * 178.68681 * 13 12 11 16 16 C 1.34773 * 120.00121 * 204.84114 * 15 13 12 17 17 O 1.21288 * 120.00112 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00120 * 179.97438 * 16 15 13 19 19 C 1.50696 * 109.47273 * 179.97438 * 18 16 15 20 20 C 1.38269 * 119.97392 * 270.25839 * 19 18 16 21 21 C 1.38192 * 120.04802 * 180.25490 * 20 19 18 22 22 C 1.38454 * 119.98893 * 359.74319 * 21 20 19 23 23 F 1.35103 * 120.02896 * 179.97438 * 22 21 20 24 24 C 1.38550 * 119.93720 * 0.02562 * 22 21 20 25 25 Cl 1.73599 * 120.02295 * 180.02562 * 24 22 21 26 26 C 1.38223 * 119.96694 * 90.00134 * 19 18 16 27 27 C 1.46930 * 120.62989 * 27.69140 * 9 7 2 28 28 H 0.96994 * 120.00369 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58387 * 353.42351 * 10 9 7 30 30 H 1.08996 * 109.58526 * 113.84608 * 10 9 7 31 31 H 1.09004 * 109.49793 * 65.31219 * 11 10 9 32 32 H 1.08995 * 109.49708 * 185.38021 * 11 10 9 33 33 H 1.09001 * 109.45712 * 301.34429 * 12 11 10 34 34 H 1.09000 * 109.46475 * 181.38455 * 12 11 10 35 35 H 0.97002 * 119.99886 * 24.83075 * 15 13 12 36 36 H 1.09006 * 109.46614 * 60.00079 * 18 16 15 37 37 H 1.08998 * 109.47089 * 299.99900 * 18 16 15 38 38 H 1.07995 * 119.97530 * 0.02562 * 20 19 18 39 39 H 1.08003 * 120.00787 * 179.72182 * 21 20 19 40 40 H 1.07996 * 119.99279 * 0.02562 * 26 19 18 41 41 H 1.09000 * 109.59088 * 6.57533 * 27 9 7 42 42 H 1.09005 * 109.58055 * 246.15359 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2796 9 7 1.3724 -2.3612 -0.3529 10 6 1.8196 -3.6547 0.1814 11 6 2.0754 -4.6098 -0.9887 12 6 0.8199 -4.6899 -1.8603 13 6 0.5017 -3.3048 -2.4280 14 1 1.3500 -2.9464 -3.0111 15 7 -0.6819 -3.3886 -3.2873 16 6 -0.8698 -2.4812 -4.2660 17 8 -0.0592 -1.5949 -4.4350 18 6 -2.0870 -2.5678 -5.1502 19 6 -2.0592 -1.4446 -6.1545 20 6 -2.6460 -0.2304 -5.8494 21 6 -2.6261 0.7989 -6.7712 22 6 -2.0134 0.6163 -7.9993 23 9 -1.9938 1.6219 -8.9013 24 6 -1.4213 -0.5990 -8.3027 25 17 -0.6520 -0.8303 -9.8416 26 6 -1.4424 -1.6274 -7.3779 27 6 0.2281 -2.3349 -1.2742 28 1 -0.4850 0.8400 -0.0004 29 1 2.7401 -3.5171 0.7487 30 1 1.0472 -4.0692 0.8292 31 1 2.9092 -4.2393 -1.5851 32 1 2.3154 -5.6008 -0.6036 33 1 -0.0192 -5.0368 -1.2573 34 1 0.9908 -5.3878 -2.6800 35 1 -1.3303 -4.0973 -3.1520 36 1 -2.9862 -2.4865 -4.5395 37 1 -2.0885 -3.5238 -5.6738 38 1 -3.1236 -0.0875 -4.8913 39 1 -3.0886 1.7456 -6.5339 40 1 -0.9811 -2.5750 -7.6137 41 1 0.0985 -1.3266 -1.6673 42 1 -0.6741 -2.6417 -0.7450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008652941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:11 Heat of formation + Delta-G solvation = -47.981032 kcal Electronic energy + Delta-G solvation = -27028.411824 eV Core-core repulsion = 22948.951622 eV Total energy + Delta-G solvation = -4079.460202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.07289 -40.03025 -38.88611 -37.28934 -36.68796 -34.12674 -32.82279 -32.55493 -31.12534 -30.07164 -29.17757 -27.11266 -25.28233 -23.36782 -22.71553 -22.16066 -21.49212 -20.00448 -19.29629 -17.94949 -16.91324 -16.80877 -16.76885 -16.30758 -15.85134 -15.38491 -15.03677 -14.56842 -14.29504 -14.08923 -14.02592 -13.70073 -13.60958 -13.42334 -13.05577 -12.96273 -12.49607 -12.38740 -12.24189 -12.02216 -11.84923 -11.56200 -11.48963 -11.09780 -11.02616 -10.76119 -10.73506 -10.50350 -10.25122 -10.00753 -9.95242 -9.55320 -9.47059 -9.13714 -8.70036 -8.56376 -8.43778 -6.67278 -5.76961 -3.19855 0.79632 0.92072 1.82788 2.97684 3.15139 3.42771 3.49290 3.50753 3.65540 3.92574 4.37174 4.48497 4.53531 4.86726 4.94352 5.03732 5.13103 5.33275 5.33953 5.38884 5.49477 5.52439 5.61084 5.64233 5.70329 5.73480 5.91833 6.06056 6.12182 6.21848 6.31240 6.40010 6.47334 6.51835 6.67734 6.75553 6.91400 6.94348 7.27974 7.70534 7.81695 7.89963 8.46742 8.61763 9.22161 9.86037 10.40512 11.31062 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003154 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.789058 B = 8874.944476 C =10237.872252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.008 3.992 3 Si 0.901 3.099 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.117 3.883 14 H 0.081 0.919 15 N -0.721 5.721 16 C 0.508 3.492 17 O -0.523 6.523 18 C -0.103 4.103 19 C -0.058 4.058 20 C -0.067 4.067 21 C -0.139 4.139 22 C 0.105 3.895 23 F -0.130 7.130 24 C -0.072 4.072 25 Cl -0.056 7.056 26 C -0.069 4.069 27 C 0.167 3.833 28 H 0.253 0.747 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.392 0.608 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.095 0.905 42 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 -8.216 -14.116 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.191 4.191 3 Si 0.730 3.270 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.011 3.989 14 H 0.099 0.901 15 N -0.372 5.372 16 C 0.293 3.707 17 O -0.398 6.398 18 C -0.143 4.143 19 C -0.059 4.059 20 C -0.085 4.085 21 C -0.158 4.158 22 C 0.085 3.915 23 F -0.108 7.108 24 C -0.100 4.100 25 Cl -0.027 7.027 26 C -0.088 4.088 27 C 0.040 3.960 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.225 0.775 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.113 0.887 42 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -7.723 -7.384 -14.376 17.912 hybrid contribution 0.167 0.679 -0.216 0.732 sum -7.556 -6.705 -14.592 17.747 Atomic orbital electron populations 1.70010 1.05321 1.25487 1.53529 1.25003 0.95259 0.98420 1.00443 0.86320 0.79129 0.83655 0.77860 1.21244 1.21754 1.20389 1.19167 0.92764 0.84837 1.41827 0.91590 1.43973 1.36047 1.01617 1.49525 1.20957 0.97725 0.86870 0.92877 1.22004 0.97006 0.99335 0.98781 1.21669 0.98897 0.96054 0.98726 1.21977 0.87085 0.96838 0.92970 0.90082 1.46071 1.26432 1.30977 1.33716 1.20289 0.87226 0.82207 0.81009 1.90795 1.45343 1.33527 1.70164 1.20708 0.98894 0.98260 0.96464 1.19308 0.97625 0.95311 0.93620 1.21042 0.97238 0.91342 0.98902 1.21105 1.01554 1.01252 0.91868 1.17408 1.01158 0.84381 0.88602 1.91526 1.94659 1.58533 1.66131 1.20871 1.03494 0.95167 0.90449 1.98377 1.79798 1.97021 1.27501 1.20770 0.97748 0.98309 0.91958 1.21088 0.88673 0.98973 0.87224 0.93707 0.92634 0.96401 0.92144 0.92635 0.92273 0.93145 0.77471 0.87410 0.87831 0.84103 0.83690 0.84160 0.88721 0.96586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 11.19 55.49 0.62 -25.81 16 2 C 0.01 0.22 4.91 -17.43 -0.09 0.14 16 3 Si 0.90 22.48 29.59 -169.99 -5.03 17.46 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.26 -7.16 9.59 -15.06 -0.14 -7.31 16 8 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 9 N -0.59 -14.76 3.00 -172.31 -0.52 -15.27 16 10 C 0.14 2.90 6.52 -3.71 -0.02 2.87 16 11 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 12 C -0.12 -1.77 5.35 -26.69 -0.14 -1.91 16 13 C 0.12 2.17 2.60 -67.81 -0.18 1.99 16 14 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 15 N -0.72 -10.52 5.08 -53.69 -0.27 -10.79 16 16 C 0.51 7.84 7.79 -10.99 -0.09 7.76 16 17 O -0.52 -10.95 15.70 5.55 0.09 -10.87 16 18 C -0.10 -1.04 5.83 -29.04 -0.17 -1.21 16 19 C -0.06 -0.67 4.37 -104.62 -0.46 -1.13 16 20 C -0.07 -0.78 9.70 -39.59 -0.38 -1.16 16 21 C -0.14 -1.60 10.03 -39.52 -0.40 -2.00 16 22 C 0.10 1.34 7.28 -39.39 -0.29 1.05 16 23 F -0.13 -1.72 16.84 2.25 0.04 -1.68 16 24 C -0.07 -0.91 6.33 -39.44 -0.25 -1.16 16 25 Cl -0.06 -0.66 28.62 -51.86 -1.48 -2.15 16 26 C -0.07 -0.81 9.48 -39.56 -0.38 -1.18 16 27 C 0.17 3.96 4.89 -3.71 -0.02 3.94 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.39 4.19 8.60 -40.82 -0.35 3.84 16 36 H 0.11 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 38 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.09 2.66 6.03 -51.93 -0.31 2.34 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -33.74 367.61 -9.84 -43.58 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.66 Total: 1.63 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.16 Total: -1.64 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.17 Total: -51.88 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.46 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.74 -9.84 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008652941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.406 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds