Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99962 * 2 1 4 4 H 1.48503 * 109.46879 * 269.99667 * 3 2 1 5 5 H 1.48503 * 109.47156 * 29.99553 * 3 2 1 6 6 H 1.48503 * 109.47184 * 149.99825 * 3 2 1 7 7 C 1.38817 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00433 * 197.36169 * 7 2 1 9 9 N 1.36937 * 119.99517 * 17.36530 * 7 2 1 10 10 C 1.46928 * 120.63152 * 207.66230 * 9 7 2 11 11 C 1.53189 * 108.77820 * 233.63448 * 10 9 7 12 12 C 1.53042 * 109.31183 * 305.36531 * 11 10 9 13 13 C 1.53038 * 109.53851 * 61.36513 * 12 11 10 14 14 H 1.08999 * 109.52705 * 58.60397 * 13 12 11 15 15 N 1.46508 * 109.49907 * 178.68681 * 13 12 11 16 16 C 1.34773 * 120.00121 * 204.84114 * 15 13 12 17 17 O 1.21288 * 120.00112 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00120 * 179.97438 * 16 15 13 19 19 C 1.50696 * 109.47273 * 179.97438 * 18 16 15 20 20 C 1.38269 * 119.97392 * 270.25839 * 19 18 16 21 21 C 1.38192 * 120.04802 * 180.25490 * 20 19 18 22 22 C 1.38454 * 119.98893 * 359.74319 * 21 20 19 23 23 F 1.35103 * 120.02896 * 179.97438 * 22 21 20 24 24 C 1.38550 * 119.93720 * 0.02562 * 22 21 20 25 25 Cl 1.73599 * 120.02295 * 180.02562 * 24 22 21 26 26 C 1.38223 * 119.96694 * 90.00134 * 19 18 16 27 27 C 1.46930 * 120.62989 * 27.69140 * 9 7 2 28 28 H 0.96994 * 120.00369 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58387 * 353.42351 * 10 9 7 30 30 H 1.08996 * 109.58526 * 113.84608 * 10 9 7 31 31 H 1.09004 * 109.49793 * 65.31219 * 11 10 9 32 32 H 1.08995 * 109.49708 * 185.38021 * 11 10 9 33 33 H 1.09001 * 109.45712 * 301.34429 * 12 11 10 34 34 H 1.09000 * 109.46475 * 181.38455 * 12 11 10 35 35 H 0.97002 * 119.99886 * 24.83075 * 15 13 12 36 36 H 1.09006 * 109.46614 * 60.00079 * 18 16 15 37 37 H 1.08998 * 109.47089 * 299.99900 * 18 16 15 38 38 H 1.07995 * 119.97530 * 0.02562 * 20 19 18 39 39 H 1.08003 * 120.00787 * 179.72182 * 21 20 19 40 40 H 1.07996 * 119.99279 * 0.02562 * 26 19 18 41 41 H 1.09000 * 109.59088 * 6.57533 * 27 9 7 42 42 H 1.09005 * 109.58055 * 246.15359 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2796 9 7 1.3724 -2.3612 -0.3529 10 6 1.8196 -3.6547 0.1814 11 6 2.0754 -4.6098 -0.9887 12 6 0.8199 -4.6899 -1.8603 13 6 0.5017 -3.3048 -2.4280 14 1 1.3500 -2.9464 -3.0111 15 7 -0.6819 -3.3886 -3.2873 16 6 -0.8698 -2.4812 -4.2660 17 8 -0.0592 -1.5949 -4.4350 18 6 -2.0870 -2.5678 -5.1502 19 6 -2.0592 -1.4446 -6.1545 20 6 -2.6460 -0.2304 -5.8494 21 6 -2.6261 0.7989 -6.7712 22 6 -2.0134 0.6163 -7.9993 23 9 -1.9938 1.6219 -8.9013 24 6 -1.4213 -0.5990 -8.3027 25 17 -0.6520 -0.8303 -9.8416 26 6 -1.4424 -1.6274 -7.3779 27 6 0.2281 -2.3349 -1.2742 28 1 -0.4850 0.8400 -0.0004 29 1 2.7401 -3.5171 0.7487 30 1 1.0472 -4.0692 0.8292 31 1 2.9092 -4.2393 -1.5851 32 1 2.3154 -5.6008 -0.6036 33 1 -0.0192 -5.0368 -1.2573 34 1 0.9908 -5.3878 -2.6800 35 1 -1.3303 -4.0973 -3.1520 36 1 -2.9862 -2.4865 -4.5395 37 1 -2.0885 -3.5238 -5.6738 38 1 -3.1236 -0.0875 -4.8913 39 1 -3.0886 1.7456 -6.5339 40 1 -0.9811 -2.5750 -7.6137 41 1 0.0985 -1.3266 -1.6673 42 1 -0.6741 -2.6417 -0.7450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008652941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -68.852484 kcal Electronic energy + Delta-G solvation = -27029.316878 eV Core-core repulsion = 22948.951622 eV Total energy + Delta-G solvation = -4080.365256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.06094 -41.15824 -40.01754 -38.79850 -37.63528 -35.74031 -34.41851 -33.63067 -32.02253 -31.88689 -30.63034 -28.16442 -27.21938 -24.26894 -24.05577 -23.80621 -22.70849 -21.33023 -20.79373 -18.90088 -18.74190 -17.97526 -17.81942 -17.44231 -16.91126 -16.84072 -16.46379 -15.99047 -15.70920 -15.30555 -15.23659 -14.99932 -14.81816 -14.75441 -14.46964 -14.15358 -13.98500 -13.93198 -13.49990 -13.14193 -12.94650 -12.89673 -12.69839 -12.50023 -12.46866 -12.32891 -12.21264 -12.04077 -12.00817 -11.67473 -11.56731 -11.23304 -10.80647 -10.55956 -10.04259 -9.99949 -9.64756 -8.67940 -7.89504 -5.34300 -0.14007 0.02707 0.89915 1.39415 1.45004 1.49984 1.79096 2.14403 2.46655 2.59414 3.00587 3.26677 3.49526 3.62014 3.76094 3.97404 4.03348 4.09459 4.11051 4.17848 4.30737 4.34279 4.51676 4.60674 4.66157 4.67526 4.81142 4.84765 4.86336 4.95677 5.02588 5.11106 5.22420 5.27337 5.33922 5.37745 5.53320 5.55703 5.62833 5.64031 5.83317 6.37216 6.74897 7.13124 7.47583 7.86466 8.34284 9.14885 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003154 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.789058 B = 8874.944476 C =10237.872252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.045 4.045 3 Si 0.955 3.045 4 H -0.297 1.297 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.265 4.265 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.123 4.123 12 C -0.106 4.106 13 C 0.131 3.869 14 H 0.046 0.954 15 N -0.708 5.708 16 C 0.503 3.497 17 O -0.586 6.586 18 C -0.090 4.090 19 C -0.066 4.066 20 C -0.077 4.077 21 C -0.143 4.143 22 C 0.086 3.914 23 F -0.137 7.137 24 C -0.085 4.085 25 Cl -0.055 7.055 26 C -0.073 4.073 27 C 0.179 3.821 28 H 0.248 0.752 29 H 0.051 0.949 30 H 0.023 0.977 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.416 0.584 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.043 0.957 42 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 -10.833 -14.396 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.241 4.241 3 Si 0.784 3.216 4 H -0.224 1.224 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.396 4.396 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.162 4.162 12 C -0.144 4.144 13 C 0.025 3.975 14 H 0.064 0.936 15 N -0.361 5.361 16 C 0.290 3.710 17 O -0.465 6.465 18 C -0.129 4.129 19 C -0.067 4.067 20 C -0.095 4.095 21 C -0.161 4.161 22 C 0.066 3.934 23 F -0.116 7.116 24 C -0.112 4.112 25 Cl -0.026 7.026 26 C -0.091 4.091 27 C 0.052 3.948 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.254 0.746 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.170 0.830 39 H 0.179 0.821 40 H 0.176 0.824 41 H 0.062 0.938 42 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -8.291 -10.071 -14.648 19.615 hybrid contribution 0.352 1.466 -0.095 1.511 sum -7.939 -8.605 -14.743 18.826 Atomic orbital electron populations 1.70141 1.06432 1.25541 1.55126 1.25675 0.96029 1.01163 1.01217 0.85442 0.78709 0.80347 0.77093 1.22428 1.21570 1.18798 1.19485 0.92981 0.86367 1.40746 0.91746 1.44266 1.36161 1.02548 1.50539 1.21176 0.97453 0.85690 0.94687 1.21905 0.97232 1.00002 0.97103 1.21630 0.98872 0.94107 0.99768 1.21431 0.87401 0.97664 0.91044 0.93602 1.45868 1.25834 1.31611 1.32741 1.21268 0.87909 0.80793 0.81000 1.90779 1.47923 1.35962 1.71862 1.20763 0.96828 0.99675 0.95644 1.19576 0.97283 0.95888 0.93945 1.21324 0.97369 0.91506 0.99326 1.21346 1.01237 1.02108 0.91440 1.17654 1.02123 0.84560 0.89095 1.91501 1.94818 1.58838 1.66422 1.21059 1.03795 0.95488 0.90866 1.98370 1.79785 1.97003 1.27443 1.21029 0.97451 0.98815 0.91821 1.20814 0.87903 0.97661 0.88410 0.94332 0.92994 0.95908 0.93344 0.88575 0.90520 0.89526 0.74638 0.84451 0.83586 0.82953 0.82086 0.82398 0.93805 0.98035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.36 11.19 21.65 0.24 -56.12 16 2 C -0.04 -2.62 4.91 84.86 0.42 -2.20 16 3 Si 0.96 47.46 29.59 68.60 2.03 49.49 16 4 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.27 -15.16 9.59 84.03 0.81 -14.36 16 8 H 0.06 3.60 7.89 -2.91 -0.02 3.58 16 9 N -0.61 -31.05 3.00 -699.08 -2.09 -33.15 16 10 C 0.13 5.35 6.52 86.36 0.56 5.92 16 11 C -0.12 -3.69 6.08 30.67 0.19 -3.50 16 12 C -0.11 -2.86 5.35 30.62 0.16 -2.70 16 13 C 0.13 4.76 2.60 45.07 0.12 4.88 16 14 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 15 N -0.71 -19.18 5.08 -442.15 -2.25 -21.43 16 16 C 0.50 14.84 7.79 87.66 0.68 15.52 16 17 O -0.59 -24.96 15.70 -3.06 -0.05 -25.01 16 18 C -0.09 -1.52 5.83 29.10 0.17 -1.35 16 19 C -0.07 -1.43 4.37 -19.86 -0.09 -1.52 16 20 C -0.08 -1.72 9.70 22.27 0.22 -1.51 16 21 C -0.14 -3.26 10.03 22.31 0.22 -3.03 16 22 C 0.09 2.19 7.28 22.40 0.16 2.36 16 23 F -0.14 -3.67 16.84 44.97 0.76 -2.91 16 24 C -0.08 -2.09 6.33 22.36 0.14 -1.95 16 25 Cl -0.05 -1.28 28.62 -2.72 -0.08 -1.36 16 26 C -0.07 -1.60 9.48 22.28 0.21 -1.39 16 27 C 0.18 8.63 4.89 86.36 0.42 9.05 16 28 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.42 7.29 8.60 -92.71 -0.80 6.49 16 36 H 0.14 1.58 8.09 -2.38 -0.02 1.56 16 37 H 0.15 1.28 8.09 -2.39 -0.02 1.26 16 38 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 39 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.04 2.56 6.03 -2.39 -0.01 2.55 16 42 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 Total: -1.00 -78.68 367.61 3.21 -75.47 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.25 Total: 10.80 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 4.40 Total: 4.21 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.10 Total: -110.69 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.05 Total: -25.01 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.76 Total: -2.91 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -78.68 3.21 -75.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008652941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.615 kcal (2) G-P(sol) polarization free energy of solvation -78.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds