Wall clock time and date at job start Sat Apr 11 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48498 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47184 * 299.99610 * 3 2 1 6 6 H 1.48495 * 109.47270 * 59.99855 * 3 2 1 7 7 C 1.38804 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00207 * 197.36743 * 7 2 1 9 9 N 1.36945 * 120.00062 * 17.36975 * 7 2 1 10 10 C 1.46923 * 120.62717 * 27.66767 * 9 7 2 11 11 C 1.53193 * 108.77640 * 126.41569 * 10 9 7 12 12 C 1.53043 * 109.31126 * 54.63033 * 11 10 9 13 13 C 1.53037 * 109.53952 * 298.63764 * 12 11 10 14 14 H 1.09008 * 109.49766 * 301.38093 * 13 12 11 15 15 N 1.46499 * 109.50004 * 181.31859 * 13 12 11 16 16 C 1.34775 * 120.00308 * 154.99769 * 15 13 12 17 17 O 1.21279 * 119.99929 * 0.02562 * 16 15 13 18 18 C 1.50708 * 119.99906 * 180.27264 * 16 15 13 19 19 C 1.50695 * 109.46836 * 179.72459 * 18 16 15 20 20 C 1.38249 * 120.00498 * 100.00172 * 19 18 16 21 21 C 1.38216 * 120.04811 * 179.97438 * 20 19 18 22 22 C 1.38251 * 120.06334 * 0.02562 * 21 20 19 23 23 C 1.38277 * 120.01694 * 359.97438 * 22 21 20 24 24 Cl 1.73605 * 120.03013 * 180.02562 * 23 22 21 25 25 C 1.38398 * 120.01239 * 279.72606 * 19 18 16 26 26 F 1.35107 * 120.02781 * 359.97438 * 25 19 18 27 27 C 1.46919 * 120.63036 * 207.68831 * 9 7 2 28 28 H 0.96998 * 119.99591 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58968 * 6.62720 * 10 9 7 30 30 H 1.08998 * 109.70662 * 246.26971 * 10 9 7 31 31 H 1.09001 * 109.49528 * 294.68622 * 11 10 9 32 32 H 1.08996 * 109.50133 * 174.58023 * 11 10 9 33 33 H 1.08999 * 109.45806 * 178.61541 * 12 11 10 34 34 H 1.09002 * 109.45111 * 58.65378 * 12 11 10 35 35 H 0.97006 * 119.99723 * 334.99586 * 15 13 12 36 36 H 1.08993 * 109.47175 * 299.72879 * 18 16 15 37 37 H 1.09001 * 109.46617 * 59.73130 * 18 16 15 38 38 H 1.08002 * 119.97081 * 359.95389 * 20 19 18 39 39 H 1.08001 * 119.96748 * 179.97438 * 21 20 19 40 40 H 1.08005 * 119.99368 * 179.97438 * 22 21 20 41 41 H 1.09005 * 109.58645 * 113.80074 * 27 9 7 42 42 H 1.08998 * 109.59125 * 353.37764 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2797 9 7 1.3724 -2.3612 -0.3530 10 6 0.2279 -2.3348 -1.2740 11 6 0.5007 -3.3053 -2.4275 12 6 0.8185 -4.6903 -1.8592 13 6 2.0741 -4.6103 -0.9880 14 1 2.9082 -4.2411 -1.5848 15 7 2.3956 -5.9424 -0.4699 16 6 3.6626 -6.2424 -0.1217 17 8 4.5365 -5.4094 -0.2367 18 6 3.9943 -7.6148 0.4054 19 6 5.4677 -7.6925 0.7117 20 6 5.9114 -7.5535 2.0137 21 6 7.2626 -7.6252 2.2957 22 6 8.1727 -7.8355 1.2764 23 6 7.7318 -7.9749 -0.0267 24 17 8.8742 -8.2396 -1.3068 25 6 6.3766 -7.9088 -0.3094 26 9 5.9434 -8.0508 -1.5812 27 6 1.8192 -3.6546 0.1818 28 1 -0.4849 0.8401 -0.0004 29 1 0.0987 -1.3266 -1.6675 30 1 -0.6757 -2.6395 -0.7461 31 1 1.3495 -2.9478 -3.0105 32 1 -0.3800 -3.3676 -3.0665 33 1 0.9889 -5.3886 -2.6786 34 1 -0.0207 -5.0364 -1.2558 35 1 1.6965 -6.6085 -0.3776 36 1 3.4236 -7.8024 1.3149 37 1 3.7391 -8.3634 -0.3446 38 1 5.2017 -7.3885 2.8109 39 1 7.6079 -7.5160 3.3132 40 1 9.2283 -7.8909 1.4980 41 1 1.0467 -4.0685 0.8300 42 1 2.7398 -3.5172 0.7488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008655777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:18 Heat of formation + Delta-G solvation = -46.888778 kcal Electronic energy + Delta-G solvation = -27033.586296 eV Core-core repulsion = 22954.173458 eV Total energy + Delta-G solvation = -4079.412838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.10996 -40.05148 -39.04925 -37.35205 -36.76299 -34.30134 -33.16450 -32.35873 -30.68356 -30.45995 -29.21372 -27.40621 -25.27769 -23.14000 -22.90823 -22.11819 -21.65247 -20.15907 -19.32077 -17.94688 -17.07365 -16.96393 -16.79996 -16.44652 -15.76914 -15.49934 -14.97488 -14.77806 -14.70233 -14.05211 -13.83206 -13.64977 -13.58624 -13.40249 -13.19542 -13.11737 -12.67450 -12.39770 -12.31875 -11.97032 -11.80773 -11.69425 -11.67746 -11.16915 -11.08429 -10.88833 -10.78077 -10.25399 -10.20934 -9.97396 -9.89772 -9.62781 -9.57744 -9.07418 -8.91813 -8.81981 -8.39457 -6.66755 -5.77588 -3.19527 0.71557 0.77954 1.75608 2.80603 3.04905 3.39781 3.46566 3.48486 3.53012 3.85449 4.17385 4.46828 4.53080 4.72021 4.80526 4.89781 4.99753 5.16098 5.30009 5.36866 5.39462 5.54498 5.58477 5.62754 5.67944 5.72926 5.83948 5.99909 6.08851 6.16274 6.24500 6.40100 6.53492 6.61723 6.67206 6.69758 6.84216 6.99309 7.36391 7.65440 7.72584 7.84574 8.41598 8.48445 9.23204 9.85573 10.40926 11.31128 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.002696 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.324614 B =10384.124878 C =11079.223331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.126 3.874 14 H 0.085 0.915 15 N -0.722 5.722 16 C 0.511 3.489 17 O -0.527 6.527 18 C -0.104 4.104 19 C -0.085 4.085 20 C -0.075 4.075 21 C -0.117 4.117 22 C -0.085 4.085 23 C -0.074 4.074 24 Cl -0.054 7.054 25 C 0.127 3.873 26 F -0.124 7.124 27 C 0.144 3.856 28 H 0.253 0.747 29 H 0.089 0.911 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.395 0.605 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.017 0.983 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.706 -21.678 2.025 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.041 3.959 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.020 3.980 14 H 0.103 0.897 15 N -0.373 5.373 16 C 0.295 3.705 17 O -0.402 6.402 18 C -0.144 4.144 19 C -0.087 4.087 20 C -0.093 4.093 21 C -0.135 4.135 22 C -0.104 4.104 23 C -0.101 4.101 24 Cl -0.025 7.025 25 C 0.107 3.893 26 F -0.102 7.102 27 C 0.016 3.984 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.228 0.772 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.034 0.966 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.328 -20.921 1.775 23.399 hybrid contribution 0.029 0.496 -0.329 0.596 sum 10.357 -20.425 1.446 22.946 Atomic orbital electron populations 1.70052 1.05236 1.25365 1.54228 1.25015 0.95299 0.98387 1.00950 0.86223 0.79550 0.83830 0.77244 1.20152 1.21518 1.21725 1.19269 0.92835 0.84690 1.41082 0.91537 1.44006 1.35610 1.01070 1.50379 1.20838 0.88553 0.98599 0.87883 1.22182 1.00440 0.95206 1.00132 1.21673 0.96719 0.98590 0.98264 1.21755 0.97798 0.81248 0.97158 0.89657 1.46108 1.09011 1.15967 1.66171 1.20268 0.82949 0.88986 0.78248 1.90770 1.46819 1.49820 1.52832 1.20644 0.92596 0.96958 1.04202 1.19322 0.94445 1.02124 0.92796 1.21061 0.96347 0.96670 0.95237 1.21132 0.92590 1.00228 0.99578 1.20967 1.01073 0.98637 0.89740 1.20942 0.88949 1.08893 0.91352 1.98385 1.59207 1.94861 1.50018 1.17174 0.90532 1.01966 0.79626 1.91535 1.90020 1.92733 1.35917 1.21168 0.97810 0.86825 0.92609 0.93729 0.89261 0.96309 0.92434 0.92711 0.93106 0.92248 0.77199 0.87073 0.87608 0.84239 0.84231 0.84057 0.96555 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 11.19 55.49 0.62 -25.75 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 22.20 29.59 -169.99 -5.03 17.17 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.25 -7.07 9.59 -15.06 -0.14 -7.21 16 8 H 0.07 1.91 7.89 -52.49 -0.41 1.50 16 9 N -0.59 -15.02 2.99 -172.33 -0.52 -15.54 16 10 C 0.17 3.96 5.31 -3.71 -0.02 3.94 16 11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 12 C -0.11 -1.84 5.35 -26.69 -0.14 -1.98 16 13 C 0.13 2.25 2.60 -67.81 -0.18 2.07 16 14 H 0.09 1.79 7.58 -51.92 -0.39 1.40 16 15 N -0.72 -9.95 5.08 -53.69 -0.27 -10.22 16 16 C 0.51 7.49 7.79 -10.98 -0.09 7.40 16 17 O -0.53 -10.37 15.62 5.56 0.09 -10.28 16 18 C -0.10 -1.03 5.56 -29.03 -0.16 -1.19 16 19 C -0.09 -0.96 4.42 -104.56 -0.46 -1.42 16 20 C -0.07 -0.69 9.67 -39.59 -0.38 -1.07 16 21 C -0.12 -0.96 10.04 -39.58 -0.40 -1.35 16 22 C -0.09 -0.78 9.83 -39.56 -0.39 -1.17 16 23 C -0.07 -0.85 6.33 -39.44 -0.25 -1.10 16 24 Cl -0.05 -0.60 28.62 -51.86 -1.48 -2.08 16 25 C 0.13 1.62 7.11 -39.39 -0.28 1.34 16 26 F -0.12 -1.73 16.23 2.25 0.04 -1.70 16 27 C 0.14 3.12 6.09 -3.72 -0.02 3.10 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.09 2.38 6.04 -51.93 -0.31 2.06 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.39 3.97 8.60 -40.82 -0.35 3.62 16 36 H 0.11 0.74 8.00 -51.93 -0.42 0.33 16 37 H 0.11 0.85 7.94 -51.93 -0.41 0.44 16 38 H 0.14 0.96 8.04 -52.49 -0.42 0.54 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -33.93 366.61 -9.85 -43.78 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.65 Total: 0.55 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.16 Total: -1.46 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.17 Total: -51.51 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.48 Total: -2.08 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.93 -9.85 -43.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008655777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.109 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds