Wall clock time and date at job start Sat Apr 11 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 120.00000 * 2 1 4 4 H 1.48500 * 109.47232 * 240.00274 * 3 2 1 5 5 H 1.48507 * 109.47308 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47362 * 120.00172 * 3 2 1 7 7 C 1.38812 * 119.99547 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99416 * 197.34904 * 7 2 1 9 9 N 1.36935 * 120.00346 * 17.35831 * 7 2 1 10 10 C 1.46928 * 120.62982 * 27.67345 * 9 7 2 11 11 C 1.53189 * 108.77653 * 126.41429 * 10 9 7 12 12 C 1.53039 * 109.31256 * 54.63311 * 11 10 9 13 13 C 1.53045 * 109.53696 * 298.63637 * 12 11 10 14 14 H 1.08997 * 109.49400 * 301.37559 * 13 12 11 15 15 N 1.46506 * 109.49394 * 181.31551 * 13 12 11 16 16 C 1.34779 * 119.99528 * 155.27049 * 15 13 12 17 17 O 1.21284 * 120.00069 * 359.72994 * 16 15 13 18 18 C 1.50699 * 119.99861 * 179.72381 * 16 15 13 19 19 C 1.50698 * 109.47418 * 180.02562 * 18 16 15 20 20 C 1.38452 * 120.02064 * 269.73050 * 19 18 16 21 21 F 1.35103 * 120.02010 * 359.97164 * 20 19 18 22 22 C 1.38457 * 119.96249 * 179.69599 * 20 19 18 23 23 C 1.38221 * 119.99730 * 0.57082 * 22 20 19 24 24 C 1.38207 * 120.04137 * 359.72672 * 23 22 20 25 25 C 1.38297 * 120.01893 * 89.99996 * 19 18 16 26 26 Cl 1.73600 * 120.00010 * 359.97438 * 25 19 18 27 27 C 1.46921 * 120.63195 * 207.69436 * 9 7 2 28 28 H 0.96998 * 119.99673 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.58616 * 6.62098 * 10 9 7 30 30 H 1.09000 * 109.69986 * 246.27019 * 10 9 7 31 31 H 1.08995 * 109.49826 * 294.68038 * 11 10 9 32 32 H 1.08999 * 109.49698 * 174.58547 * 11 10 9 33 33 H 1.09004 * 109.46048 * 178.61736 * 12 11 10 34 34 H 1.09006 * 109.44948 * 58.64973 * 12 11 10 35 35 H 0.96998 * 120.00376 * 335.00456 * 15 13 12 36 36 H 1.09005 * 109.47032 * 300.00356 * 18 16 15 37 37 H 1.08996 * 109.46841 * 60.00342 * 18 16 15 38 38 H 1.07997 * 120.00063 * 180.29599 * 22 20 19 39 39 H 1.08001 * 119.98093 * 179.73936 * 23 22 20 40 40 H 1.07993 * 119.98226 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.58494 * 113.79379 * 27 9 7 42 42 H 1.09009 * 109.58580 * 353.37537 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3527 10 6 0.2277 -2.3350 -1.2736 11 6 0.5005 -3.3056 -2.4270 12 6 0.8183 -4.6906 -1.8585 13 6 2.0740 -4.6104 -0.9874 14 1 2.9079 -4.2414 -1.5844 15 7 2.3954 -5.9425 -0.4692 16 6 3.6614 -6.2407 -0.1158 17 8 4.5354 -5.4079 -0.2315 18 6 3.9909 -7.6089 0.4231 19 6 5.4622 -7.6831 0.7401 20 6 6.3584 -8.1080 -0.2259 21 9 5.9142 -8.4570 -1.4532 22 6 7.7107 -8.1697 0.0646 23 6 8.1640 -7.8184 1.3223 24 6 7.2688 -7.4002 2.2886 25 6 5.9176 -7.3321 1.9979 26 17 4.7941 -6.8052 3.2119 27 6 1.8191 -3.6546 0.1822 28 1 -0.4849 0.8401 0.0004 29 1 0.0985 -1.3269 -1.6672 30 1 -0.6758 -2.6397 -0.7455 31 1 1.3491 -2.9483 -3.0102 32 1 -0.3804 -3.3680 -3.0660 33 1 0.9886 -5.3890 -2.6778 34 1 -0.0210 -5.0365 -1.2550 35 1 1.6964 -6.6087 -0.3767 36 1 3.4145 -7.7906 1.3303 37 1 3.7412 -8.3631 -0.3232 38 1 8.4108 -8.4965 -0.6899 39 1 9.2185 -7.8707 1.5500 40 1 7.6240 -7.1263 3.2710 41 1 1.0467 -4.0683 0.8306 42 1 2.7399 -3.5171 0.7492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009314067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:27 Heat of formation + Delta-G solvation = -67.197483 kcal Electronic energy + Delta-G solvation = -27278.456863 eV Core-core repulsion = 23198.163373 eV Total energy + Delta-G solvation = -4080.293490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.03224 -41.19901 -40.04496 -38.88683 -37.51248 -35.93891 -34.31051 -33.90451 -32.35870 -31.44186 -30.63716 -28.43996 -27.27113 -24.18035 -23.89089 -23.87365 -22.87257 -21.44502 -20.91473 -18.83431 -18.73976 -18.15889 -17.92846 -17.39041 -16.88199 -16.65842 -16.40792 -16.19819 -15.77951 -15.72900 -15.29114 -15.02663 -14.83729 -14.59205 -14.51332 -14.22567 -14.03969 -13.98134 -13.42097 -13.40199 -13.04008 -12.76091 -12.69936 -12.56098 -12.46602 -12.38437 -12.16127 -11.99160 -11.91973 -11.77052 -11.59090 -11.32753 -10.97037 -10.62760 -10.12198 -9.87274 -9.73719 -8.71492 -7.92510 -5.37869 -0.05125 0.00049 0.99492 1.42584 1.45036 1.52515 1.62806 2.09572 2.45270 2.53497 3.19007 3.21455 3.36244 3.67616 3.68733 3.82491 3.88129 3.98222 4.10025 4.20788 4.24256 4.32866 4.38995 4.46645 4.51204 4.57623 4.79437 4.84413 4.90327 5.00548 5.01961 5.07715 5.11007 5.15671 5.19920 5.25916 5.46047 5.55584 5.60692 5.70264 5.74664 6.34685 6.58500 7.10833 7.29211 7.80556 8.30410 9.13108 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.003119 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.958197 B = 8975.624134 C = 9773.705396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.042 4.042 3 Si 0.965 3.035 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.271 4.271 8 H 0.051 0.949 9 N -0.607 5.607 10 C 0.171 3.829 11 C -0.130 4.130 12 C -0.104 4.104 13 C 0.143 3.857 14 H 0.054 0.946 15 N -0.709 5.709 16 C 0.513 3.487 17 O -0.576 6.576 18 C -0.101 4.101 19 C -0.110 4.110 20 C 0.101 3.899 21 F -0.139 7.139 22 C -0.149 4.149 23 C -0.070 4.070 24 C -0.124 4.124 25 C -0.016 4.016 26 Cl -0.062 7.062 27 C 0.147 3.853 28 H 0.253 0.747 29 H 0.055 0.945 30 H 0.006 0.994 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.416 0.584 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.165 0.835 39 H 0.180 0.820 40 H 0.160 0.840 41 H 0.020 0.980 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.138 -23.437 1.091 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.238 4.238 3 Si 0.792 3.208 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.401 4.401 8 H 0.069 0.931 9 N -0.331 5.331 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.142 4.142 13 C 0.037 3.963 14 H 0.072 0.928 15 N -0.361 5.361 16 C 0.300 3.700 17 O -0.455 6.455 18 C -0.141 4.141 19 C -0.113 4.113 20 C 0.081 3.919 21 F -0.118 7.118 22 C -0.168 4.168 23 C -0.088 4.088 24 C -0.142 4.142 25 C -0.043 4.043 26 Cl -0.033 7.033 27 C 0.020 3.980 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.254 0.746 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.183 0.817 39 H 0.198 0.802 40 H 0.177 0.823 41 H 0.038 0.962 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 11.508 -22.671 1.080 25.448 hybrid contribution -0.377 1.070 0.140 1.143 sum 11.132 -21.601 1.219 24.331 Atomic orbital electron populations 1.70163 1.06357 1.26121 1.54763 1.25707 0.96117 1.01156 1.00802 0.85393 0.77773 0.79354 0.78257 1.20559 1.21033 1.20437 1.19352 0.92554 0.86461 1.41724 0.93124 1.44219 1.36034 1.01525 1.51337 1.20719 0.87510 0.98194 0.88952 1.22019 1.01327 0.95331 0.98268 1.21612 0.95872 0.97623 0.99086 1.21223 0.97826 0.82079 0.95220 0.92785 1.45874 1.09733 1.14924 1.65555 1.20886 0.82385 0.89805 0.76922 1.90731 1.48285 1.51511 1.54999 1.20680 0.92986 0.94992 1.05424 1.19251 0.95847 1.03206 0.92950 1.17577 0.93275 1.01118 0.79916 1.91484 1.90202 1.89616 1.40491 1.21597 0.93020 1.02273 0.99894 1.21405 1.01701 0.95019 0.90706 1.21471 0.90018 1.00279 1.02444 1.20779 0.92144 1.01388 0.89960 1.98391 1.61958 1.88751 1.54154 1.21186 0.96231 0.86502 0.94053 0.93789 0.92693 0.97632 0.93580 0.89625 0.89474 0.90447 0.74637 0.85418 0.84940 0.81708 0.80223 0.82258 0.96190 0.95471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 11.19 21.65 0.24 -55.70 16 2 C -0.04 -2.44 4.91 84.86 0.42 -2.02 16 3 Si 0.96 46.96 29.59 68.60 2.03 48.99 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 6 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.27 -16.12 9.59 84.03 0.81 -15.31 16 8 H 0.05 3.09 7.89 -2.91 -0.02 3.06 16 9 N -0.61 -32.51 2.99 -699.12 -2.09 -34.60 16 10 C 0.17 8.36 5.31 86.36 0.46 8.82 16 11 C -0.13 -4.77 6.08 30.67 0.19 -4.58 16 12 C -0.10 -3.14 5.35 30.62 0.16 -2.98 16 13 C 0.14 5.20 2.60 45.07 0.12 5.32 16 14 H 0.05 2.34 7.58 -2.39 -0.02 2.32 16 15 N -0.71 -19.79 5.08 -442.16 -2.25 -22.04 16 16 C 0.51 15.78 7.79 87.66 0.68 16.47 16 17 O -0.58 -23.80 15.70 -3.04 -0.05 -23.85 16 18 C -0.10 -2.21 5.26 29.10 0.15 -2.05 16 19 C -0.11 -2.62 4.38 -19.80 -0.09 -2.71 16 20 C 0.10 2.26 7.24 22.37 0.16 2.42 16 21 F -0.14 -3.32 16.48 44.97 0.74 -2.58 16 22 C -0.15 -2.46 10.03 22.32 0.22 -2.23 16 23 C -0.07 -0.94 10.04 22.26 0.22 -0.72 16 24 C -0.12 -2.12 9.83 22.30 0.22 -1.90 16 25 C -0.02 -0.36 6.31 22.32 0.14 -0.22 16 26 Cl -0.06 -1.46 27.29 -2.72 -0.07 -1.54 16 27 C 0.15 6.75 6.09 86.36 0.53 7.28 16 28 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.05 3.04 6.04 -2.39 -0.01 3.02 16 30 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.42 8.03 8.60 -92.71 -0.80 7.24 16 36 H 0.13 2.32 6.90 -2.38 -0.02 2.30 16 37 H 0.13 2.16 7.63 -2.39 -0.02 2.14 16 38 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.18 0.99 8.06 -2.91 -0.02 0.96 16 40 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.03 1.37 7.93 -2.38 -0.02 1.35 16 Total: -1.00 -77.19 364.37 3.20 -73.99 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.26 Total: 11.76 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 4.39 Total: 5.57 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -4.10 Total: -112.34 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.74 Total: -2.58 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.07 Total: -1.54 kcal Total: -77.19 3.20 -73.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009314067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.788 kcal (2) G-P(sol) polarization free energy of solvation -77.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds