Wall clock time and date at job start Sat Apr 11 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38164 * 120.08161 * 2 1 4 4 F 1.35099 * 119.93738 * 359.97438 * 3 2 1 5 5 C 1.38583 * 120.12766 * 180.02562 * 3 2 1 6 6 C 1.38285 * 120.29173 * 0.02562 * 5 3 2 7 7 C 1.38109 * 120.16045 * 359.71553 * 6 5 3 8 8 Cl 1.73598 * 120.06845 * 180.27960 * 7 6 5 9 9 C 1.39573 * 120.07938 * 180.02562 * 2 1 3 10 10 C 1.47781 * 120.14230 * 359.97438 * 9 2 1 11 11 O 1.21561 * 119.99833 * 90.00020 * 10 9 2 12 12 N 1.34776 * 119.99675 * 270.00494 * 10 9 2 13 13 C 1.46505 * 119.99638 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47097 * 179.97438 * 13 12 10 15 15 H 1.09005 * 110.63669 * 51.85851 * 14 13 12 16 16 C 1.55156 * 110.71830 * 174.99627 * 14 13 12 17 17 C 1.54906 * 101.61451 * 154.02508 * 16 14 13 18 18 N 1.47471 * 104.81210 * 323.04512 * 17 16 14 19 19 C 1.36937 * 125.62509 * 204.14198 * 18 17 16 20 20 H 1.08004 * 119.99479 * 179.91598 * 19 18 17 21 21 C 1.38806 * 120.00537 * 359.91425 * 19 18 17 22 22 N 1.31628 * 120.00035 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00199 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47376 * 90.00011 * 23 21 19 25 25 H 1.48499 * 109.46835 * 210.00000 * 23 21 19 26 26 H 1.48494 * 109.47029 * 329.99798 * 23 21 19 27 27 C 1.47017 * 108.71970 * 24.07007 * 18 17 16 28 28 H 1.08997 * 109.47274 * 269.98356 * 1 2 3 29 29 H 1.09009 * 109.46871 * 29.98140 * 1 2 3 30 30 H 1.09001 * 109.47408 * 149.97928 * 1 2 3 31 31 H 1.07998 * 119.85345 * 179.97438 * 5 3 2 32 32 H 1.07999 * 119.91766 * 179.97438 * 6 5 3 33 33 H 0.97001 * 120.00552 * 359.97438 * 12 10 9 34 34 H 1.09006 * 109.47066 * 59.99373 * 13 12 10 35 35 H 1.09000 * 109.47236 * 299.99784 * 13 12 10 36 36 H 1.09002 * 111.00677 * 272.12092 * 16 14 13 37 37 H 1.09002 * 111.00564 * 35.93350 * 16 14 13 38 38 H 1.09008 * 110.36753 * 81.85112 * 17 16 14 39 39 H 1.09001 * 110.37094 * 204.16995 * 17 16 14 40 40 H 0.96994 * 120.00079 * 179.97438 * 22 21 19 41 41 H 1.08998 * 109.88206 * 239.55467 * 27 18 17 42 42 H 1.09007 * 109.88177 * 118.39340 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1955 0.0000 4 9 1.5244 2.3658 -0.0005 5 6 3.5854 1.1967 -0.0005 6 6 4.2838 0.0032 -0.0016 7 6 3.6037 -1.1988 0.0038 8 17 4.4830 -2.6957 0.0097 9 6 2.2065 -1.2078 -0.0005 10 6 1.4726 -2.4904 -0.0005 11 8 1.1703 -3.0177 -1.0533 12 7 1.1383 -3.0755 1.1667 13 6 0.4112 -4.3474 1.1667 14 6 0.1588 -4.7905 2.6092 15 1 -0.3062 -3.9880 3.1819 16 6 -0.7183 -6.0699 2.6449 17 6 -0.2959 -6.7000 3.9954 18 7 1.1491 -6.4264 4.1036 19 6 2.0442 -7.1486 4.8468 20 1 3.0869 -6.8671 4.8594 21 6 1.6116 -8.2422 5.5841 22 7 0.3408 -8.5849 5.5693 23 14 2.8327 -9.2268 6.5986 24 1 2.9172 -8.6528 7.9656 25 1 2.3817 -10.6392 6.6818 26 1 4.1696 -9.1711 5.9548 27 6 1.4698 -5.2514 3.2802 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5141 31 1 4.1222 2.1338 -0.0010 32 1 5.3638 0.0111 -0.0024 33 1 1.3798 -2.6549 2.0068 34 1 1.0034 -5.1045 0.6526 35 1 -0.5418 -4.2211 0.6530 36 1 -1.7786 -5.8168 2.6464 37 1 -0.4780 -6.7317 1.8128 38 1 -0.8335 -6.2290 4.8185 39 1 -0.4797 -7.7744 3.9868 40 1 0.0386 -9.3493 6.0842 41 1 2.2012 -5.5211 2.5184 42 1 1.8642 -4.4539 3.9099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028639723.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:30 Heat of formation + Delta-G solvation = -43.050991 kcal Electronic energy + Delta-G solvation = -26811.935225 eV Core-core repulsion = 22732.688806 eV Total energy + Delta-G solvation = -4079.246419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.38648 -40.58528 -38.78548 -37.59597 -36.82635 -34.72512 -33.45403 -32.53342 -31.15757 -29.76458 -28.32504 -27.64323 -25.73236 -24.46498 -23.16271 -22.30099 -20.92887 -20.07629 -19.76427 -18.33695 -17.49631 -16.90702 -16.71050 -16.48698 -16.29808 -15.99693 -15.32869 -14.79464 -14.57499 -14.19246 -13.92038 -13.85869 -13.78575 -13.61995 -13.30748 -13.21462 -12.71576 -12.52140 -12.38415 -11.99902 -11.81330 -11.74557 -11.52963 -11.50115 -11.28965 -10.96594 -10.82026 -10.50369 -10.21502 -10.08292 -10.00667 -9.79906 -9.53620 -9.48612 -9.08472 -8.99131 -8.66124 -6.84616 -5.66640 -3.08205 0.33756 0.49174 1.68367 2.35968 2.74781 3.02577 3.39171 3.44268 3.46256 3.73305 4.08487 4.18818 4.40891 4.48235 4.57757 4.86072 4.99918 5.10902 5.17129 5.20400 5.21391 5.37280 5.46476 5.49156 5.51300 5.60863 5.65062 5.67697 5.85096 6.01543 6.06858 6.14853 6.31266 6.33446 6.53818 6.55966 6.69202 6.88602 7.36271 7.49562 7.61671 7.84261 8.01981 8.35123 9.21060 9.82015 10.46576 11.37434 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.002682 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.583987 B =10438.513357 C =11210.149845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C 0.100 3.900 4 F -0.129 7.129 5 C -0.123 4.123 6 C -0.088 4.088 7 C -0.015 4.015 8 Cl -0.038 7.038 9 C -0.090 4.090 10 C 0.564 3.436 11 O -0.523 6.523 12 N -0.710 5.710 13 C 0.132 3.868 14 C -0.114 4.114 15 H 0.076 0.924 16 C -0.135 4.135 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.222 4.222 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.142 3.858 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.404 0.596 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.012 0.988 39 H 0.107 0.893 40 H 0.252 0.748 41 H 0.025 0.975 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 20.850 -11.730 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.074 4.074 3 C 0.080 3.920 4 F -0.108 7.108 5 C -0.142 4.142 6 C -0.107 4.107 7 C -0.043 4.043 8 Cl -0.009 7.009 9 C -0.094 4.094 10 C 0.348 3.652 11 O -0.399 6.399 12 N -0.361 5.361 13 C 0.009 3.991 14 C -0.134 4.134 15 H 0.095 0.905 16 C -0.174 4.174 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.351 4.351 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.016 3.984 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.238 0.762 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.030 0.970 39 H 0.125 0.875 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.971 20.148 -12.340 23.813 hybrid contribution 0.834 -0.074 1.019 1.319 sum 3.805 20.075 -11.322 23.359 Atomic orbital electron populations 1.20873 0.88835 1.04464 1.03811 1.19854 0.97529 0.90049 1.00004 1.17354 0.89956 0.80924 1.03738 1.91523 1.80236 1.45255 1.93768 1.21222 0.92040 0.99685 1.01279 1.20869 1.01117 0.89315 0.99415 1.20980 0.90899 0.89122 1.03306 1.98446 1.75066 1.30924 1.96448 1.19612 0.91954 0.94039 1.03766 1.17852 0.79091 0.83622 0.84640 1.90839 1.53929 1.64055 1.31072 1.46075 1.57612 1.24364 1.08002 1.21556 0.96108 0.83861 0.97599 1.22447 0.98669 0.98775 0.93486 0.90519 1.23009 0.97478 0.95204 1.01722 1.21940 0.83301 1.02410 0.89616 1.44511 1.04931 1.29910 1.53710 1.19073 0.89779 1.06494 1.19726 0.90559 1.24784 0.96392 0.98924 1.00577 1.69795 1.13035 1.29162 1.45131 0.86077 0.79994 0.79402 0.80065 1.21640 1.21630 1.20699 1.21324 0.93575 0.90273 0.93250 0.89661 0.90149 0.90132 0.83278 0.83187 0.76188 0.90862 0.91274 0.92092 0.91796 0.97006 0.87532 0.93726 0.95748 0.96419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.44 36.01 0.34 -0.74 16 2 C -0.07 -0.72 5.92 -104.15 -0.62 -1.34 16 3 C 0.10 0.88 7.23 -39.48 -0.29 0.60 16 4 F -0.13 -1.16 16.47 2.25 0.04 -1.12 16 5 C -0.12 -0.88 10.02 -39.44 -0.39 -1.27 16 6 C -0.09 -0.69 9.81 -39.61 -0.39 -1.07 16 7 C -0.02 -0.16 6.35 -39.07 -0.25 -0.41 16 8 Cl -0.04 -0.45 28.04 -51.86 -1.45 -1.91 16 9 C -0.09 -1.02 5.63 -104.94 -0.59 -1.61 16 10 C 0.56 7.64 4.77 -12.36 -0.06 7.59 16 11 O -0.52 -8.87 17.10 5.31 0.09 -8.78 16 12 N -0.71 -8.93 5.47 -61.27 -0.34 -9.27 16 13 C 0.13 1.86 5.02 -4.04 -0.02 1.84 16 14 C -0.11 -1.83 2.95 -88.79 -0.26 -2.09 16 15 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 16 C -0.13 -2.43 6.53 -24.58 -0.16 -2.59 16 17 C 0.15 3.61 5.89 -2.50 -0.01 3.60 16 18 N -0.60 -15.28 3.40 -170.04 -0.58 -15.85 16 19 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 20 H 0.08 2.06 7.83 -52.48 -0.41 1.64 16 21 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -26.74 10.09 55.49 0.56 -26.18 16 23 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.14 2.84 6.76 -3.07 -0.02 2.82 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.61 7.64 -51.92 -0.40 0.22 16 30 H 0.08 0.80 7.08 -51.93 -0.37 0.44 16 31 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 32 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.40 4.44 8.46 -40.82 -0.35 4.09 16 34 H 0.07 1.16 7.94 -51.93 -0.41 0.75 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 38 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 39 H 0.11 2.87 5.88 -51.93 -0.31 2.57 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.02 0.50 7.69 -51.93 -0.40 0.10 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -32.02 367.37 -9.71 -41.73 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.57 Total: 0.29 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.97 Total: -1.44 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.35 Total: -51.30 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.45 Total: -1.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.02 -9.71 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028639723.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.321 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds