Wall clock time and date at job start Sat Apr 11 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38156 * 120.08485 * 2 1 4 4 F 1.35105 * 119.93331 * 359.97438 * 3 2 1 5 5 C 1.38583 * 120.13570 * 180.02562 * 3 2 1 6 6 C 1.38285 * 120.28584 * 359.97438 * 5 3 2 7 7 C 1.38109 * 120.16213 * 359.71441 * 6 5 3 8 8 Cl 1.73601 * 120.06965 * 180.27944 * 7 6 5 9 9 C 1.39572 * 120.07725 * 179.97438 * 2 1 3 10 10 C 1.47776 * 120.14590 * 0.02562 * 9 2 1 11 11 O 1.21553 * 120.00204 * 89.99881 * 10 9 2 12 12 N 1.34779 * 119.99831 * 270.00094 * 10 9 2 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 10 15 15 H 1.08997 * 110.64262 * 305.69360 * 14 13 12 16 16 C 1.55164 * 110.71750 * 182.55756 * 14 13 12 17 17 C 1.54908 * 101.57931 * 206.13010 * 16 14 13 18 18 N 1.47430 * 104.83134 * 37.01126 * 17 16 14 19 19 C 1.36942 * 125.64516 * 155.89947 * 18 17 16 20 20 H 1.07996 * 119.99418 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00015 * 359.97438 * 19 18 17 22 22 N 1.31614 * 120.00405 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99497 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47277 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46841 * 119.99903 * 23 21 19 26 26 H 1.48505 * 109.46759 * 239.99744 * 23 21 19 27 27 C 1.47314 * 108.73467 * 335.71446 * 18 17 16 28 28 H 1.09011 * 109.46590 * 270.02170 * 1 2 3 29 29 H 1.09002 * 109.47288 * 30.01571 * 1 2 3 30 30 H 1.09001 * 109.47602 * 150.02179 * 1 2 3 31 31 H 1.08000 * 119.85872 * 179.97438 * 5 3 2 32 32 H 1.07999 * 119.91759 * 180.02562 * 6 5 3 33 33 H 0.97000 * 119.99708 * 359.97438 * 12 10 9 34 34 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 35 35 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 36 36 H 1.08995 * 111.00450 * 324.20690 * 16 14 13 37 37 H 1.09003 * 111.00051 * 88.02285 * 16 14 13 38 38 H 1.09003 * 110.36036 * 155.84656 * 17 16 14 39 39 H 1.08998 * 110.36782 * 278.06041 * 17 16 14 40 40 H 0.96991 * 120.00555 * 179.97438 * 22 21 19 41 41 H 1.09002 * 110.06317 * 241.86989 * 27 18 17 42 42 H 1.08996 * 109.85306 * 120.61548 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1954 0.0000 4 9 1.5244 2.3657 -0.0005 5 6 3.5854 1.1967 -0.0005 6 6 4.2838 0.0032 -0.0005 7 6 3.6037 -1.1988 0.0059 8 17 4.4830 -2.6957 0.0133 9 6 2.2065 -1.2078 0.0005 10 6 1.4726 -2.4904 0.0005 11 8 1.1711 -3.0182 -1.0521 12 7 1.1375 -3.0750 1.1678 13 6 0.4104 -4.3469 1.1678 14 6 0.1559 -4.7888 2.6103 15 1 1.0895 -4.8236 3.1719 16 6 -0.5571 -6.1665 2.6447 17 6 -1.2990 -6.0987 4.0029 18 7 -1.7402 -4.6971 4.1224 19 6 -2.7921 -4.2533 4.8787 20 1 -3.0357 -3.2014 4.9001 21 6 -3.5449 -5.1554 5.6178 22 7 -3.2483 -6.4374 5.5913 23 14 -4.9793 -4.5497 6.6500 24 1 -5.1027 -3.0766 6.5098 25 1 -6.2318 -5.1983 6.1857 26 1 -4.7430 -4.8928 8.0754 27 6 -0.8599 -3.8519 3.2973 28 1 -0.3633 0.0004 1.0278 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 4.1222 2.1338 -0.0010 32 1 5.3638 0.0111 -0.0005 33 1 1.3784 -2.6540 2.0078 34 1 1.0030 -5.1042 0.6545 35 1 -0.5423 -4.2207 0.6534 36 1 -1.2618 -6.2623 1.8188 37 1 0.1668 -6.9813 2.6346 38 1 -2.1593 -6.7682 3.9989 39 1 -0.6227 -6.3561 4.8179 40 1 -3.7741 -7.0677 6.1080 41 1 -0.3347 -3.1331 3.9262 42 1 -1.4489 -3.3281 2.5445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028639724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:32 Heat of formation + Delta-G solvation = -43.281294 kcal Electronic energy + Delta-G solvation = -26859.755135 eV Core-core repulsion = 22780.498729 eV Total energy + Delta-G solvation = -4079.256406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.35464 -40.58457 -38.78869 -37.59119 -36.88963 -34.72053 -33.42904 -32.53744 -31.16034 -29.76645 -28.32977 -27.60089 -25.74638 -24.46403 -23.16640 -22.29064 -20.92744 -20.07475 -19.76063 -18.34446 -17.47200 -16.91338 -16.72489 -16.48584 -16.28122 -15.97710 -15.35960 -14.77189 -14.51749 -14.29485 -13.88919 -13.84126 -13.75162 -13.57856 -13.32242 -13.19419 -12.71198 -12.53915 -12.33935 -11.98877 -11.81745 -11.73288 -11.53480 -11.52837 -11.35547 -10.97086 -10.83892 -10.52792 -10.21460 -10.06524 -10.01029 -9.80740 -9.54368 -9.47723 -9.08234 -8.99798 -8.67605 -6.85976 -5.67689 -3.09460 0.33454 0.49900 1.61896 2.36306 2.75029 3.03043 3.38125 3.43620 3.46107 3.74530 4.10134 4.20445 4.41519 4.47213 4.57830 4.88255 5.00626 5.11796 5.20648 5.21939 5.31513 5.36990 5.46354 5.48270 5.50104 5.65965 5.66318 5.74521 5.84505 6.02047 6.06188 6.16403 6.30503 6.33003 6.51647 6.55897 6.67744 6.86933 7.36559 7.49164 7.60445 7.83399 8.02269 8.34061 9.19819 9.80612 10.45269 11.36317 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.002780 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.110898 B =10069.257314 C =11348.420736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 C 0.101 3.899 4 F -0.128 7.128 5 C -0.123 4.123 6 C -0.089 4.089 7 C -0.016 4.016 8 Cl -0.045 7.045 9 C -0.090 4.090 10 C 0.564 3.436 11 O -0.523 6.523 12 N -0.710 5.710 13 C 0.132 3.868 14 C -0.115 4.115 15 H 0.077 0.923 16 C -0.135 4.135 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.141 3.859 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.404 0.596 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.018 0.982 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.490 12.924 -11.787 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.071 4.071 3 C 0.082 3.918 4 F -0.107 7.107 5 C -0.142 4.142 6 C -0.108 4.108 7 C -0.043 4.043 8 Cl -0.015 7.015 9 C -0.094 4.094 10 C 0.348 3.652 11 O -0.399 6.399 12 N -0.360 5.360 13 C 0.009 3.991 14 C -0.134 4.134 15 H 0.095 0.905 16 C -0.174 4.174 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.351 4.351 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.570 5.570 23 Si 0.744 3.256 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.015 3.985 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.238 0.762 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 16.128 12.345 -12.394 23.793 hybrid contribution -0.454 0.674 1.029 1.311 sum 15.674 13.020 -11.365 23.331 Atomic orbital electron populations 1.20905 0.88618 1.04538 1.04150 1.19900 0.97679 0.90028 0.99502 1.17372 0.89946 0.80990 1.03500 1.91533 1.80231 1.45191 1.93708 1.21220 0.92040 0.99674 1.01312 1.20838 1.01025 0.89312 0.99642 1.20924 0.90786 0.88797 1.03820 1.98421 1.75161 1.31383 1.96561 1.19612 0.91894 0.94091 1.03773 1.17847 0.79108 0.83601 0.84637 1.90837 1.53988 1.63993 1.31084 1.46069 1.57473 1.24500 1.08007 1.21550 0.96366 0.83593 0.97598 1.22453 0.99297 0.98188 0.93477 0.90497 1.23005 0.98801 0.93882 1.01692 1.21926 0.98042 0.87776 0.89529 1.44582 1.32642 1.02617 1.53231 1.19118 1.03849 0.92918 1.19204 0.90496 1.24787 0.99811 0.95540 1.00553 1.69797 1.41416 1.00836 1.44991 0.86006 0.82034 0.77724 0.79786 1.20541 1.21710 1.21757 1.21381 0.91024 0.92921 0.93172 0.89349 0.90089 0.90059 0.83263 0.83253 0.76178 0.91289 0.90887 0.91794 0.92083 0.87514 0.97027 0.93759 0.96393 0.95727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.44 36.01 0.34 -0.93 16 2 C -0.07 -0.73 5.92 -104.16 -0.62 -1.34 16 3 C 0.10 0.94 7.23 -39.48 -0.29 0.65 16 4 F -0.13 -1.24 16.47 2.25 0.04 -1.20 16 5 C -0.12 -0.88 10.02 -39.44 -0.40 -1.28 16 6 C -0.09 -0.66 9.81 -39.61 -0.39 -1.05 16 7 C -0.02 -0.16 6.35 -39.07 -0.25 -0.40 16 8 Cl -0.04 -0.46 28.04 -51.86 -1.45 -1.92 16 9 C -0.09 -1.03 5.63 -104.94 -0.59 -1.62 16 10 C 0.56 7.67 4.77 -12.36 -0.06 7.61 16 11 O -0.52 -8.88 17.10 5.32 0.09 -8.79 16 12 N -0.71 -8.97 5.43 -61.27 -0.33 -9.30 16 13 C 0.13 1.86 5.00 -4.04 -0.02 1.84 16 14 C -0.11 -1.84 2.98 -88.78 -0.26 -2.10 16 15 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 16 C -0.13 -2.43 6.54 -24.58 -0.16 -2.59 16 17 C 0.15 3.60 5.89 -2.53 -0.01 3.59 16 18 N -0.60 -15.13 3.40 -169.84 -0.58 -15.71 16 19 C -0.22 -6.12 10.28 -15.06 -0.15 -6.28 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -26.60 10.09 55.49 0.56 -26.04 16 23 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.14 2.77 6.67 -2.91 -0.02 2.75 16 28 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.08 0.73 7.64 -51.93 -0.40 0.33 16 30 H 0.08 0.94 7.08 -51.93 -0.37 0.57 16 31 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.40 4.47 8.39 -40.82 -0.34 4.13 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 36 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.11 2.87 5.87 -51.93 -0.31 2.56 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -31.71 367.27 -9.71 -41.42 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.57 Total: 0.73 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -2.97 Total: -1.57 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.35 Total: -51.05 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.45 Total: -1.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.71 -9.71 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028639724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.861 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds