Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38448 * 119.83616 * 2 1 4 4 C 1.37856 * 120.22705 * 179.76484 * 3 2 1 5 5 C 1.39670 * 119.90206 * 0.49033 * 4 3 2 6 6 C 1.47704 * 120.15791 * 179.79040 * 5 4 3 7 7 O 1.21568 * 119.99628 * 179.71777 * 6 5 4 8 8 N 1.34775 * 120.00073 * 359.72062 * 6 5 4 9 9 C 1.46497 * 119.99944 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47114 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.92180 * 57.44684 * 10 9 8 12 12 C 1.55155 * 111.00532 * 181.35298 * 10 9 8 13 13 C 1.54327 * 102.94571 * 153.57522 * 12 10 9 14 14 N 1.47024 * 107.26774 * 337.80617 * 13 12 10 15 15 C 1.36941 * 125.64618 * 179.20447 * 14 13 12 16 16 H 1.08005 * 119.99780 * 179.68989 * 15 14 13 17 17 C 1.38813 * 119.99913 * 359.69358 * 15 14 13 18 18 N 1.31616 * 119.99926 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99719 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47341 * 89.99896 * 19 17 15 21 21 H 1.48503 * 109.46756 * 209.99724 * 19 17 15 22 22 H 1.48496 * 109.46957 * 329.99498 * 19 17 15 23 23 C 1.47426 * 108.70449 * 358.94057 * 14 13 12 24 24 C 1.39792 * 119.67918 * 359.51119 * 5 4 3 25 25 F 1.35102 * 120.11497 * 180.27829 * 24 5 4 26 26 C 1.38300 * 119.83484 * 180.02562 * 2 1 3 27 27 Cl 1.73601 * 119.95558 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.46700 * 269.97697 * 1 2 3 29 29 H 1.09000 * 109.47240 * 29.97715 * 1 2 3 30 30 H 1.09000 * 109.47332 * 149.97917 * 1 2 3 31 31 H 1.07997 * 119.88729 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.04736 * 180.27765 * 4 3 2 33 33 H 0.97000 * 120.00160 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.46937 * 60.00106 * 9 8 6 35 35 H 1.09002 * 109.47231 * 300.00009 * 9 8 6 36 36 H 1.08999 * 110.71965 * 271.93488 * 12 10 9 37 37 H 1.09000 * 110.72417 * 35.03508 * 12 10 9 38 38 H 1.08995 * 109.88184 * 218.39040 * 13 12 10 39 39 H 1.09002 * 109.88385 * 97.22047 * 13 12 10 40 40 H 0.97001 * 119.99407 * 180.02562 * 18 17 15 41 41 H 1.09002 * 110.36518 * 142.96440 * 23 14 13 42 42 H 1.08995 * 110.36673 * 265.17549 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2010 0.0000 4 6 3.5743 1.2104 0.0049 5 6 4.2789 0.0044 -0.0005 6 6 5.7559 0.0079 0.0000 7 8 6.3662 -1.0435 0.0005 8 7 6.4270 1.1767 0.0000 9 6 7.8920 1.1802 0.0011 10 6 8.3986 2.6238 0.0015 11 1 8.0099 3.1725 0.8594 12 6 9.9491 2.6691 -0.0315 13 6 10.2411 4.0308 -0.6967 14 7 9.0438 4.4083 -1.4619 15 6 8.8904 5.5598 -2.1871 16 1 7.9697 5.7431 -2.7210 17 6 9.9184 6.4914 -2.2359 18 7 11.0403 6.2682 -1.5849 19 14 9.7088 8.0624 -3.2245 20 1 9.1270 9.1187 -2.3580 21 1 11.0318 8.5096 -3.7295 22 1 8.8012 7.8078 -4.3720 23 6 8.0382 3.3391 -1.3245 24 6 3.5794 -1.2059 -0.0005 25 9 4.2520 -2.3776 0.0000 26 6 2.1951 -1.1997 -0.0005 27 17 1.3216 -2.6999 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6513 2.1336 0.0004 32 1 4.1087 2.1489 0.0094 33 1 5.9401 2.0156 0.0000 34 1 8.2572 0.6668 -0.8884 35 1 8.2559 0.6676 0.8916 36 1 10.3574 2.6380 0.9786 37 1 10.3462 1.8506 -0.6319 38 1 11.0960 3.9403 -1.3667 39 1 10.4442 4.7808 0.0678 40 1 11.7584 6.9194 -1.6188 41 1 7.0368 3.7654 -1.2656 42 1 8.1056 2.6451 -2.1623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028709182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = -41.093347 kcal Electronic energy + Delta-G solvation = -26436.843471 eV Core-core repulsion = 22357.681942 eV Total energy + Delta-G solvation = -4079.161529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.16896 -40.39543 -39.05525 -37.66261 -36.92254 -34.78791 -33.43061 -32.45555 -30.97098 -29.91737 -28.66686 -27.71707 -25.55409 -23.85676 -23.34506 -22.66658 -20.87821 -19.98677 -19.92123 -18.33377 -17.33251 -17.15939 -16.80029 -16.23417 -15.80561 -15.74370 -15.21927 -14.86678 -14.70511 -14.48784 -14.29770 -14.00325 -13.79702 -13.50880 -13.14257 -12.89068 -12.69120 -12.45768 -12.38742 -12.08080 -12.05962 -11.85536 -11.74003 -11.43079 -11.34709 -10.93795 -10.82593 -10.48985 -10.20860 -10.07665 -9.93173 -9.84037 -9.69074 -9.35096 -9.18197 -9.00354 -8.63304 -6.86881 -5.74536 -3.08340 0.16941 0.50896 1.53184 2.42719 2.99079 3.26393 3.37140 3.42204 3.44451 3.57885 4.10972 4.19054 4.41801 4.46285 4.50616 4.82540 4.90579 5.07242 5.08168 5.18913 5.27948 5.36150 5.39386 5.49589 5.50555 5.59451 5.64787 5.73716 5.84822 5.99704 6.01278 6.11456 6.30303 6.33855 6.43793 6.50010 6.62957 6.86268 7.38562 7.52507 7.60342 7.79620 8.07435 8.22758 9.18674 9.79116 10.44991 11.37190 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.002257 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.611377 B =12400.214802 C =13588.595245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.024 4.024 3 C -0.128 4.128 4 C -0.047 4.047 5 C -0.166 4.166 6 C 0.556 3.444 7 O -0.526 6.526 8 N -0.715 5.715 9 C 0.133 3.867 10 C -0.118 4.118 11 H 0.080 0.920 12 C -0.135 4.135 13 C 0.177 3.823 14 N -0.606 5.606 15 C -0.230 4.230 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.142 3.858 24 C 0.174 3.826 25 F -0.101 7.101 26 C -0.092 4.092 27 Cl -0.042 7.042 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.401 0.599 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.047 0.953 40 H 0.252 0.748 41 H 0.034 0.966 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.118 -12.789 6.128 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.025 4.025 3 C -0.146 4.146 4 C -0.066 4.066 5 C -0.170 4.170 6 C 0.342 3.658 7 O -0.403 6.403 8 N -0.367 5.367 9 C 0.010 3.990 10 C -0.138 4.138 11 H 0.099 0.901 12 C -0.174 4.174 13 C 0.052 3.948 14 N -0.333 5.333 15 C -0.358 4.358 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.015 3.985 24 C 0.152 3.848 25 F -0.079 7.079 26 C -0.120 4.120 27 Cl -0.013 7.013 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.237 0.763 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -20.548 -13.530 6.064 25.338 hybrid contribution -0.158 0.964 -0.530 1.111 sum -20.705 -12.566 5.535 24.844 Atomic orbital electron populations 1.20992 0.89170 1.04283 1.03677 1.19878 0.97360 0.90487 0.94820 1.21041 0.93730 0.97714 1.02112 1.21393 0.94432 0.96955 0.93812 1.20062 0.94592 0.92520 1.09827 1.17832 0.86023 0.84466 0.77527 1.90852 1.69266 1.31003 1.49143 1.45935 1.08342 1.07925 1.74516 1.21467 0.77650 0.97548 1.02368 1.22627 0.97805 0.93262 1.00132 0.90125 1.22862 0.93070 1.00784 1.00636 1.21154 0.89654 0.89673 0.94283 1.44481 1.12465 1.18464 1.57844 1.19043 1.00108 0.93918 1.22745 0.90489 1.24813 0.96251 0.98908 1.00495 1.69964 1.05349 1.35692 1.45872 0.86119 0.76872 0.83250 0.79513 1.21601 1.21655 1.20703 1.21567 0.93149 0.90661 0.93074 1.17331 0.87676 0.81826 0.97942 1.91643 1.79830 1.44032 1.92377 1.20759 0.90278 0.89259 1.11725 1.98383 1.75383 1.30604 1.96933 0.89730 0.90137 0.90301 0.83507 0.83633 0.76342 0.91021 0.91340 0.91917 0.92138 0.93879 0.93488 0.93719 0.94752 0.96265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.60 36.01 0.35 -0.25 16 2 C -0.02 -0.18 5.89 -104.52 -0.62 -0.79 16 3 C -0.13 -0.83 9.67 -39.64 -0.38 -1.21 16 4 C -0.05 -0.38 9.54 -39.19 -0.37 -0.75 16 5 C -0.17 -1.89 5.88 -104.92 -0.62 -2.51 16 6 C 0.56 7.78 7.77 -12.39 -0.10 7.68 16 7 O -0.53 -9.37 15.34 5.31 0.08 -9.28 16 8 N -0.72 -8.86 5.36 -61.30 -0.33 -9.19 16 9 C 0.13 1.86 5.12 -4.05 -0.02 1.84 16 10 C -0.12 -1.87 3.10 -88.47 -0.27 -2.15 16 11 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 12 C -0.13 -2.38 6.42 -24.90 -0.16 -2.54 16 13 C 0.18 4.19 5.37 -3.06 -0.02 4.17 16 14 N -0.61 -15.01 3.39 -170.07 -0.58 -15.59 16 15 C -0.23 -6.26 10.28 -15.06 -0.15 -6.42 16 16 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -26.75 10.31 55.49 0.57 -26.17 16 19 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 C 0.14 2.73 6.41 -2.53 -0.02 2.71 16 24 C 0.17 2.11 7.26 -38.93 -0.28 1.83 16 25 F -0.10 -1.48 15.12 2.25 0.03 -1.44 16 26 C -0.09 -0.91 6.31 -39.49 -0.25 -1.15 16 27 Cl -0.04 -0.39 26.93 -51.86 -1.40 -1.78 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 30 H 0.08 0.40 6.88 -51.93 -0.36 0.04 16 31 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.15 0.85 6.40 -52.49 -0.34 0.51 16 33 H 0.40 4.01 6.37 -40.82 -0.26 3.75 16 34 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 38 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 39 H 0.05 1.23 7.38 -51.93 -0.38 0.84 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.02 0.39 8.01 -51.93 -0.42 -0.03 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -33.19 363.11 -9.66 -42.84 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.48 Total: -1.68 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -3.01 Total: 0.13 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.33 Total: -50.95 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.03 Total: -1.44 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.40 Total: -1.78 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.19 -9.66 -42.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028709182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.751 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds