Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38450 * 119.84144 * 2 1 4 4 C 1.37853 * 120.23635 * 179.97438 * 3 2 1 5 5 C 1.39667 * 119.89787 * 0.28498 * 4 3 2 6 6 C 1.47695 * 120.16053 * 179.74095 * 5 4 3 7 7 O 1.21569 * 120.00408 * 179.97438 * 6 5 4 8 8 N 1.34778 * 120.00077 * 359.97438 * 6 5 4 9 9 C 1.46494 * 120.00556 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47632 * 180.02562 * 9 8 6 11 11 H 1.09003 * 110.64232 * 305.70134 * 10 9 8 12 12 C 1.55161 * 110.72516 * 182.56338 * 10 9 8 13 13 C 1.54909 * 101.57960 * 206.13565 * 12 10 9 14 14 N 1.47421 * 104.83542 * 37.00526 * 13 12 10 15 15 C 1.36939 * 125.64428 * 155.90555 * 14 13 12 16 16 H 1.08000 * 119.99426 * 179.97438 * 15 14 13 17 17 C 1.38808 * 120.00509 * 359.97301 * 15 14 13 18 18 N 1.31628 * 119.99841 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00364 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46944 * 90.00245 * 19 17 15 21 21 H 1.48498 * 109.47484 * 210.00143 * 19 17 15 22 22 H 1.48505 * 109.47025 * 330.00529 * 19 17 15 23 23 C 1.47318 * 108.73568 * 335.71738 * 14 13 12 24 24 C 1.39799 * 119.67985 * 359.48744 * 5 4 3 25 25 F 1.35099 * 120.11276 * 180.27171 * 24 5 4 26 26 C 1.38300 * 119.83580 * 180.02562 * 2 1 3 27 27 Cl 1.73594 * 119.95551 * 359.95934 * 26 2 1 28 28 H 1.08997 * 109.46719 * 89.99659 * 1 2 3 29 29 H 1.08997 * 109.47237 * 209.99841 * 1 2 3 30 30 H 1.09001 * 109.46665 * 329.99847 * 1 2 3 31 31 H 1.08000 * 119.88083 * 0.02744 * 3 2 1 32 32 H 1.08002 * 120.04825 * 179.97438 * 4 3 2 33 33 H 0.96999 * 119.99636 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.47034 * 300.00497 * 9 8 6 35 35 H 1.08998 * 109.46814 * 60.00056 * 9 8 6 36 36 H 1.09003 * 110.99928 * 324.20384 * 12 10 9 37 37 H 1.08993 * 111.00523 * 88.01768 * 12 10 9 38 38 H 1.09003 * 110.36155 * 155.84857 * 13 12 10 39 39 H 1.08999 * 110.36551 * 278.05240 * 13 12 10 40 40 H 0.96991 * 119.99650 * 179.97438 * 18 17 15 41 41 H 1.09006 * 110.06065 * 241.87090 * 23 14 13 42 42 H 1.09000 * 109.84857 * 120.61737 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2009 0.0000 4 6 3.5744 1.2104 0.0005 5 6 4.2789 0.0045 -0.0049 6 6 5.7559 0.0079 -0.0102 7 8 6.3662 -1.0435 -0.0145 8 7 6.4271 1.1767 -0.0102 9 6 7.8920 1.1802 -0.0148 10 6 8.3986 2.6238 -0.0132 11 1 7.9616 3.1853 -0.8389 12 6 9.9482 2.6620 -0.0829 13 6 10.2566 4.0200 0.5955 14 7 9.2620 4.1359 1.6775 15 6 9.4005 4.8913 2.8112 16 1 8.6105 4.9100 3.5474 17 6 10.5562 5.6329 3.0144 18 7 11.5188 5.6104 2.1169 19 14 10.7449 6.6638 4.5606 20 1 11.3793 5.8466 5.6260 21 1 11.5976 7.8438 4.2680 22 1 9.4076 7.1204 5.0173 23 6 8.0921 3.3085 1.3354 24 6 3.5794 -1.2059 -0.0001 25 9 4.2521 -2.3775 0.0002 26 6 2.1951 -1.1997 -0.0005 27 17 1.3216 -2.6999 -0.0001 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6514 2.1336 0.0004 32 1 4.1088 2.1490 0.0001 33 1 5.9401 2.0155 -0.0064 34 1 8.2594 0.6655 0.8731 35 1 8.2537 0.6688 -0.9069 36 1 10.3850 1.8364 0.4791 37 1 10.2931 2.6537 -1.1168 38 1 11.2661 4.0179 1.0068 39 1 10.1403 4.8356 -0.1181 40 1 12.3261 6.1289 2.2586 41 1 7.2057 3.9356 1.2398 42 1 7.9339 2.5545 2.1065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028709183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -39.592767 kcal Electronic energy + Delta-G solvation = -26427.384192 eV Core-core repulsion = 22348.287733 eV Total energy + Delta-G solvation = -4079.096459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.17045 -40.39918 -39.05936 -37.64927 -36.92586 -34.78572 -33.43778 -32.46169 -30.97695 -29.90724 -28.65330 -27.70910 -25.55743 -23.84925 -23.35230 -22.65926 -20.90840 -20.07204 -19.79430 -18.31529 -17.32972 -17.16039 -16.83377 -16.23857 -15.82311 -15.73996 -15.23898 -14.87590 -14.75581 -14.48850 -14.30326 -14.00462 -13.77486 -13.56723 -12.93669 -12.89910 -12.68389 -12.55018 -12.46143 -12.08232 -11.87930 -11.79371 -11.71729 -11.52786 -11.35253 -10.98339 -10.82294 -10.49743 -10.19671 -10.07931 -10.00429 -9.80501 -9.54976 -9.35491 -9.18687 -9.00354 -8.67785 -6.86813 -5.68245 -3.10113 0.16386 0.50248 1.52852 2.42398 2.99108 3.26254 3.38098 3.42954 3.44886 3.57467 4.10303 4.18101 4.41016 4.46061 4.50112 4.81863 4.89862 5.07361 5.07655 5.21042 5.27161 5.35063 5.38061 5.48280 5.50005 5.58682 5.65708 5.72781 5.83846 6.01860 6.05765 6.11114 6.30359 6.34100 6.49839 6.55303 6.66924 6.85831 7.38372 7.48193 7.59341 7.82899 8.07715 8.33570 9.19197 9.79911 10.44539 11.35751 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.002196 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.248540 B =12746.963927 C =13513.307273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.024 4.024 3 C -0.128 4.128 4 C -0.047 4.047 5 C -0.165 4.165 6 C 0.555 3.445 7 O -0.525 6.525 8 N -0.716 5.716 9 C 0.132 3.868 10 C -0.115 4.115 11 H 0.076 0.924 12 C -0.135 4.135 13 C 0.152 3.848 14 N -0.604 5.604 15 C -0.223 4.223 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.140 3.860 24 C 0.174 3.826 25 F -0.101 7.101 26 C -0.092 4.092 27 Cl -0.042 7.042 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.400 0.600 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.018 0.982 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.389 -10.582 -7.917 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.026 4.026 3 C -0.146 4.146 4 C -0.066 4.066 5 C -0.170 4.170 6 C 0.341 3.659 7 O -0.402 6.402 8 N -0.368 5.368 9 C 0.009 3.991 10 C -0.134 4.134 11 H 0.095 0.905 12 C -0.174 4.174 13 C 0.027 3.973 14 N -0.331 5.331 15 C -0.352 4.352 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.571 5.571 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.014 3.986 24 C 0.152 3.848 25 F -0.079 7.079 26 C -0.120 4.120 27 Cl -0.013 7.013 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.236 0.764 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -21.809 -11.369 -7.812 25.805 hybrid contribution -0.105 0.690 0.762 1.033 sum -21.914 -10.679 -7.050 25.376 Atomic orbital electron populations 1.20990 0.89166 1.04286 1.03670 1.19876 0.97358 0.90486 0.94835 1.21034 0.93719 0.97705 1.02168 1.21381 0.94419 0.96933 0.93882 1.20066 0.94601 0.92528 1.09783 1.17834 0.86018 0.84483 0.77552 1.90856 1.69251 1.31000 1.49059 1.45947 1.08369 1.07882 1.74572 1.21531 0.77535 0.97522 1.02470 1.22457 0.98356 0.93470 0.99160 0.90521 1.23009 0.92456 1.01719 1.00234 1.21929 0.97352 0.89531 0.88486 1.44572 1.14577 1.53169 1.20748 1.19070 1.01329 1.19227 0.95542 0.90543 1.24795 0.96726 1.00551 0.98632 1.69795 1.07854 1.44985 1.34448 0.86070 0.77502 0.79579 0.82322 1.21557 1.21637 1.20757 1.21394 0.91288 0.93160 0.92731 1.17336 0.87680 0.81838 0.97901 1.91644 1.79824 1.44024 1.92362 1.20762 0.90280 0.89275 1.11697 1.98384 1.75374 1.30591 1.96928 0.89733 0.90292 0.90146 0.83528 0.83672 0.76438 0.90895 0.91299 0.91768 0.92048 0.87501 0.96990 0.93697 0.96405 0.95684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 9.60 36.01 0.35 -0.24 16 2 C -0.02 -0.18 5.89 -104.52 -0.62 -0.79 16 3 C -0.13 -0.81 9.67 -39.64 -0.38 -1.20 16 4 C -0.05 -0.37 9.54 -39.19 -0.37 -0.75 16 5 C -0.17 -1.90 5.88 -104.92 -0.62 -2.51 16 6 C 0.56 7.86 7.77 -12.40 -0.10 7.77 16 7 O -0.52 -9.49 15.34 5.31 0.08 -9.41 16 8 N -0.72 -8.95 5.38 -61.31 -0.33 -9.28 16 9 C 0.13 1.90 5.00 -4.05 -0.02 1.88 16 10 C -0.12 -1.83 2.98 -88.79 -0.26 -2.10 16 11 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 12 C -0.13 -2.44 6.54 -24.58 -0.16 -2.60 16 13 C 0.15 3.59 5.89 -2.53 -0.01 3.57 16 14 N -0.60 -15.12 3.40 -169.84 -0.58 -15.70 16 15 C -0.22 -6.14 10.28 -15.06 -0.15 -6.30 16 16 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 17 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 18 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 19 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.14 2.74 6.66 -2.90 -0.02 2.72 16 24 C 0.17 2.12 7.26 -38.93 -0.28 1.84 16 25 F -0.10 -1.49 15.12 2.25 0.03 -1.45 16 26 C -0.09 -0.91 6.31 -39.49 -0.25 -1.15 16 27 Cl -0.04 -0.39 26.93 -51.86 -1.40 -1.78 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.39 6.88 -51.93 -0.36 0.04 16 30 H 0.08 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.15 0.81 6.40 -52.49 -0.34 0.48 16 33 H 0.40 3.96 6.43 -40.82 -0.26 3.70 16 34 H 0.07 1.17 8.00 -51.93 -0.42 0.75 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.16 8.05 -51.93 -0.42 0.75 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 2.87 5.88 -51.93 -0.31 2.57 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.03 0.50 7.73 -51.93 -0.40 0.10 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -33.13 362.38 -9.61 -42.74 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.42 Total: -1.09 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -3.00 Total: -0.26 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.35 Total: -51.02 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.03 Total: -1.45 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.40 Total: -1.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.13 -9.61 -42.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028709183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.146 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds