Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38160 * 120.08392 * 2 1 4 4 F 1.35103 * 119.93589 * 0.02562 * 3 2 1 5 5 C 1.38583 * 120.12876 * 180.23404 * 3 2 1 6 6 C 1.38281 * 120.29121 * 359.78678 * 5 3 2 7 7 C 1.38113 * 120.15912 * 359.95796 * 6 5 3 8 8 Cl 1.73600 * 120.06397 * 180.02562 * 7 6 5 9 9 C 1.39572 * 120.07535 * 179.74480 * 2 1 3 10 10 C 1.47775 * 120.14646 * 0.02562 * 9 2 1 11 11 O 1.21564 * 120.00010 * 269.72469 * 10 9 2 12 12 N 1.34779 * 119.99944 * 89.71795 * 10 9 2 13 13 C 1.46498 * 120.00029 * 0.02562 * 12 10 9 14 14 C 1.46497 * 120.00005 * 180.02562 * 12 10 9 15 15 H 1.08994 * 110.64204 * 356.86226 * 14 12 10 16 16 C 1.55154 * 110.72021 * 120.00343 * 14 12 10 17 17 C 1.54908 * 101.58289 * 153.86481 * 16 14 12 18 18 N 1.47425 * 104.92961 * 322.93718 * 17 16 14 19 19 C 1.36938 * 125.65179 * 204.15650 * 18 17 16 20 20 H 1.07995 * 120.00281 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99650 * 0.02562 * 19 18 17 22 22 N 1.31621 * 120.00025 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00113 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47190 * 89.99819 * 23 21 19 25 25 H 1.48500 * 109.47472 * 210.00112 * 23 21 19 26 26 H 1.48507 * 109.46699 * 329.99987 * 23 21 19 27 27 C 1.47290 * 108.55742 * 24.15407 * 18 17 16 28 28 H 1.08998 * 109.47005 * 270.26038 * 1 2 3 29 29 H 1.09006 * 109.46514 * 30.25187 * 1 2 3 30 30 H 1.08988 * 109.47187 * 150.25100 * 1 2 3 31 31 H 1.07999 * 119.85519 * 179.76552 * 5 3 2 32 32 H 1.07997 * 119.92338 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47002 * 269.99911 * 13 12 10 34 34 H 1.09005 * 109.47542 * 29.99649 * 13 12 10 35 35 H 1.08999 * 109.47135 * 149.99117 * 13 12 10 36 36 H 1.09008 * 111.00345 * 35.78951 * 16 14 12 37 37 H 1.09000 * 111.03743 * 271.95917 * 16 14 12 38 38 H 1.09002 * 110.36632 * 81.83114 * 17 16 14 39 39 H 1.08995 * 110.36781 * 204.04351 * 17 16 14 40 40 H 0.97001 * 119.99611 * 180.02562 * 22 21 19 41 41 H 1.09004 * 109.85762 * 239.50064 * 27 18 17 42 42 H 1.08995 * 110.00297 * 118.43011 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1996 1.1955 0.0000 4 9 1.5245 2.3658 0.0005 5 6 3.5854 1.1966 -0.0049 6 6 4.2839 0.0031 -0.0054 7 6 3.6037 -1.1989 -0.0001 8 17 4.4830 -2.6957 0.0000 9 6 2.2065 -1.2078 0.0054 10 6 1.4726 -2.4904 0.0105 11 8 1.1747 -3.0160 1.0654 12 7 1.1334 -3.0774 -1.1543 13 6 1.4927 -2.4442 -2.4256 14 6 0.4053 -4.3486 -1.1493 15 1 0.2666 -4.7079 -0.1296 16 6 -0.9607 -4.2018 -1.8702 17 6 -1.2168 -5.6523 -2.3498 18 7 0.1105 -6.1643 -2.7366 19 6 0.3465 -7.1796 -3.6247 20 1 1.3602 -7.4826 -3.8415 21 6 -0.7171 -7.8193 -4.2462 22 7 -1.9525 -7.4496 -3.9824 23 14 -0.3953 -9.2047 -5.4571 24 1 -0.3639 -10.4997 -4.7309 25 1 -1.4764 -9.2340 -6.4747 26 1 0.9105 -8.9819 -6.1285 27 6 1.1380 -5.4009 -2.0080 28 1 -0.3633 0.0047 1.0276 29 1 -0.3632 0.8878 -0.5178 30 1 -0.3633 -0.8921 -0.5099 31 1 4.1223 2.1337 -0.0087 32 1 5.3638 0.0109 -0.0096 33 1 0.6901 -1.7764 -2.7385 34 1 2.4124 -1.8727 -2.2998 35 1 1.6432 -3.2121 -3.1843 36 1 -0.8846 -3.5182 -2.7159 37 1 -1.7362 -3.8769 -1.1766 38 1 -1.6334 -6.2516 -1.5402 39 1 -1.8892 -5.6550 -3.2077 40 1 -2.6957 -7.8969 -4.4164 41 1 1.8020 -4.9047 -2.7159 42 1 1.7129 -6.0682 -1.3660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033202228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -23.777496 kcal Electronic energy + Delta-G solvation = -27738.158113 eV Core-core repulsion = 23659.747455 eV Total energy + Delta-G solvation = -4078.410658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.32854 -40.68883 -38.85476 -37.26077 -36.77980 -34.83534 -33.35329 -32.18996 -30.94745 -29.25311 -27.75726 -27.45047 -26.71314 -24.82298 -23.80783 -22.25404 -20.83392 -20.24189 -19.06069 -17.99432 -17.42743 -17.03459 -16.81165 -16.64748 -16.08003 -15.83590 -14.96977 -14.72382 -14.26276 -14.20987 -13.88848 -13.78319 -13.71285 -13.30890 -13.17083 -13.07672 -12.89453 -12.42420 -12.26563 -12.20027 -11.92733 -11.82986 -11.56440 -11.45621 -11.23686 -11.06359 -10.91102 -10.82919 -10.52578 -10.13643 -9.87400 -9.84591 -9.58237 -9.37545 -8.93452 -8.68821 -8.44622 -6.87789 -5.68254 -3.10744 0.40471 0.55295 1.72805 2.46049 2.78044 3.03444 3.38630 3.43700 3.45389 3.76158 4.10028 4.21350 4.37583 4.47280 4.63569 4.91448 5.05927 5.17689 5.24291 5.31628 5.35215 5.39561 5.48905 5.51102 5.53665 5.58120 5.65663 5.73030 5.73897 5.77610 5.88036 6.20546 6.21603 6.29879 6.47782 6.53300 6.67793 6.90720 7.41724 7.48785 7.58980 7.81117 8.09804 8.31788 9.18130 9.78484 10.42753 11.35339 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019129 B = 0.003027 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.363816 B = 9246.617798 C = 9965.985101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C 0.101 3.899 4 F -0.130 7.130 5 C -0.126 4.126 6 C -0.088 4.088 7 C -0.019 4.019 8 Cl -0.041 7.041 9 C -0.079 4.079 10 C 0.563 3.437 11 O -0.523 6.523 12 N -0.586 5.586 13 C 0.072 3.928 14 C 0.126 3.874 15 H 0.105 0.895 16 C -0.151 4.151 17 C 0.153 3.847 18 N -0.602 5.602 19 C -0.222 4.222 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.129 3.871 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.015 0.985 39 H 0.110 0.890 40 H 0.253 0.747 41 H 0.031 0.969 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.195 19.979 6.568 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.075 4.075 3 C 0.082 3.918 4 F -0.108 7.108 5 C -0.145 4.145 6 C -0.107 4.107 7 C -0.047 4.047 8 Cl -0.011 7.011 9 C -0.083 4.083 10 C 0.349 3.651 11 O -0.400 6.400 12 N -0.317 5.317 13 C -0.071 4.071 14 C 0.023 3.977 15 H 0.123 0.877 16 C -0.190 4.190 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.351 4.351 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.746 3.254 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.002 3.998 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.033 0.967 39 H 0.128 0.872 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 9.963 19.428 6.966 22.918 hybrid contribution 0.277 -0.581 -0.593 0.875 sum 10.241 18.847 6.373 22.376 Atomic orbital electron populations 1.20861 0.88802 1.04235 1.03945 1.19861 0.97587 0.90010 1.00058 1.17351 0.89933 0.80893 1.03638 1.91522 1.80259 1.45252 1.93760 1.21189 0.92013 0.99612 1.01721 1.20839 1.00997 0.89298 0.99566 1.20948 0.90868 0.88978 1.03898 1.98434 1.75063 1.31152 1.96501 1.19609 0.91952 0.94123 1.02660 1.17897 0.79195 0.83625 0.84384 1.90821 1.54408 1.64122 1.30609 1.47801 1.55534 1.22931 1.05453 1.21850 0.99980 0.98879 0.86382 1.22319 0.92024 0.81916 1.01431 0.87713 1.23379 0.94876 1.01652 0.99136 1.21942 0.89015 0.86308 0.99941 1.44486 1.00644 1.39192 1.48533 1.19058 0.92938 1.07937 1.15121 0.90459 1.24785 0.95196 0.99993 1.00573 1.69780 0.97460 1.43432 1.46338 0.86064 0.77048 0.81843 0.80474 1.21603 1.21635 1.20692 1.21560 0.92454 0.92226 0.93514 0.89692 0.90153 0.90222 0.83345 0.83280 0.92320 0.91750 0.89238 0.91693 0.92017 0.96717 0.87217 0.93670 0.95148 0.95590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.44 36.01 0.34 -0.92 16 2 C -0.07 -0.81 5.92 -104.15 -0.62 -1.42 16 3 C 0.10 0.96 7.23 -39.48 -0.29 0.68 16 4 F -0.13 -1.24 16.47 2.25 0.04 -1.21 16 5 C -0.13 -0.95 10.02 -39.44 -0.40 -1.35 16 6 C -0.09 -0.71 9.81 -39.61 -0.39 -1.10 16 7 C -0.02 -0.21 5.92 -39.07 -0.23 -0.45 16 8 Cl -0.04 -0.50 28.04 -51.86 -1.45 -1.95 16 9 C -0.08 -1.00 3.92 -104.95 -0.41 -1.41 16 10 C 0.56 8.77 4.63 -12.36 -0.06 8.71 16 11 O -0.52 -9.95 16.48 5.31 0.09 -9.86 16 12 N -0.59 -8.96 2.88 -172.98 -0.50 -9.46 16 13 C 0.07 0.91 9.12 59.85 0.55 1.46 16 14 C 0.13 2.30 3.36 -66.10 -0.22 2.08 16 15 H 0.10 2.07 6.99 -51.93 -0.36 1.71 16 16 C -0.15 -2.81 6.66 -24.58 -0.16 -2.98 16 17 C 0.15 3.65 5.89 -2.53 -0.01 3.63 16 18 N -0.60 -15.16 3.40 -169.86 -0.58 -15.74 16 19 C -0.22 -6.10 10.28 -15.06 -0.15 -6.26 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.41 10.09 55.49 0.56 -25.85 16 23 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.13 2.70 6.82 -2.92 -0.02 2.68 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.69 7.64 -51.93 -0.40 0.30 16 30 H 0.08 0.91 7.08 -51.94 -0.37 0.54 16 31 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.06 0.71 6.55 -51.93 -0.34 0.37 16 35 H 0.09 1.24 6.08 -51.93 -0.32 0.92 16 36 H 0.06 1.15 7.29 -51.92 -0.38 0.77 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.11 2.92 5.86 -51.93 -0.30 2.61 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.03 0.61 5.93 -51.93 -0.31 0.30 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -31.22 359.07 -8.91 -40.13 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.28 Total: -1.23 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.17 Total: 2.98 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.52 Total: -51.05 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.45 Total: -1.95 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.22 -8.91 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033202228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.348 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds