Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38449 * 119.84230 * 2 1 4 4 C 1.37851 * 120.23641 * 179.76723 * 3 2 1 5 5 C 1.39669 * 119.89723 * 0.46282 * 4 3 2 6 6 C 1.47696 * 120.16225 * 179.78890 * 5 4 3 7 7 O 1.21568 * 120.00623 * 204.91663 * 6 5 4 8 8 N 1.34787 * 119.99643 * 24.91616 * 6 5 4 9 9 C 1.46503 * 119.99924 * 3.51851 * 8 6 5 10 10 C 1.46493 * 120.00056 * 183.51883 * 8 6 5 11 11 H 1.08997 * 110.88583 * 3.87478 * 10 8 6 12 12 C 1.55157 * 111.00317 * 239.99985 * 10 8 6 13 13 C 1.54327 * 102.94455 * 206.42113 * 12 10 8 14 14 N 1.47026 * 107.26714 * 22.19229 * 13 12 10 15 15 C 1.36936 * 125.64863 * 181.01918 * 14 13 12 16 16 H 1.07996 * 120.00032 * 175.14303 * 15 14 13 17 17 C 1.38812 * 119.99540 * 355.14509 * 15 14 13 18 18 N 1.31627 * 119.99580 * 156.51309 * 17 15 14 19 19 Si 1.86793 * 120.00485 * 336.23666 * 17 15 14 20 20 H 1.48502 * 109.47635 * 185.85452 * 19 17 15 21 21 H 1.48505 * 109.47166 * 305.85413 * 19 17 15 22 22 H 1.48501 * 109.47377 * 65.85195 * 19 17 15 23 23 C 1.47427 * 108.70198 * 1.28907 * 14 13 12 24 24 C 1.39797 * 119.68333 * 359.52060 * 5 4 3 25 25 F 1.35098 * 120.11754 * 180.23340 * 24 5 4 26 26 C 1.38303 * 119.83535 * 179.97438 * 2 1 3 27 27 Cl 1.73599 * 119.95375 * 0.02562 * 26 2 1 28 28 H 1.09004 * 109.47099 * 270.02343 * 1 2 3 29 29 H 1.09001 * 109.47172 * 30.02007 * 1 2 3 30 30 H 1.08994 * 109.47597 * 150.01888 * 1 2 3 31 31 H 1.08011 * 119.87851 * 359.97438 * 3 2 1 32 32 H 1.07992 * 120.05194 * 180.25666 * 4 3 2 33 33 H 1.08999 * 109.47159 * 264.06831 * 9 8 6 34 34 H 1.09007 * 109.47059 * 24.06430 * 9 8 6 35 35 H 1.09000 * 109.46948 * 144.06719 * 9 8 6 36 36 H 1.09004 * 110.72424 * 88.06193 * 12 10 8 37 37 H 1.09001 * 110.87562 * 324.85689 * 12 10 8 38 38 H 1.08997 * 109.88682 * 262.77856 * 13 12 10 39 39 H 1.09000 * 110.00825 * 141.67799 * 13 12 10 40 40 H 0.96999 * 120.00312 * 354.71666 * 18 17 15 41 41 H 1.08993 * 110.36815 * 94.48275 * 23 14 13 42 42 H 1.09001 * 110.36026 * 216.80244 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.2009 0.0000 4 6 3.5743 1.2104 0.0048 5 6 4.2788 0.0044 0.0000 6 6 5.7558 0.0078 0.0004 7 8 6.3661 -0.9437 -0.4469 8 7 6.4271 1.0659 0.4968 9 6 5.6939 2.1784 1.1059 10 6 7.8899 1.1035 0.4273 11 1 8.2756 0.2386 -0.1123 12 6 8.5118 1.1966 1.8458 13 6 9.8650 1.8914 1.5850 14 7 9.7455 2.6154 0.3109 15 6 10.7366 3.3465 -0.2875 16 1 10.5746 3.7781 -1.2642 17 6 11.9496 3.5330 0.3612 18 7 13.0327 3.8071 -0.3347 19 14 12.0433 3.4025 2.2222 20 1 13.4057 3.7797 2.6770 21 1 11.0463 4.3177 2.8334 22 1 11.7524 2.0062 2.6358 23 6 8.3798 2.4291 -0.2123 24 6 3.5794 -1.2060 0.0004 25 9 4.2520 -2.3776 0.0005 26 6 2.1950 -1.1997 0.0005 27 17 1.3215 -2.6999 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6513 2.1337 -0.0004 32 1 4.1087 2.1488 0.0090 33 1 5.5487 2.9660 0.3665 34 1 4.7238 1.8257 1.4563 35 1 6.2635 2.5712 1.9481 36 1 8.6636 0.2026 2.2664 37 1 7.8884 1.8014 2.5043 38 1 10.6571 1.1460 1.5149 39 1 10.0857 2.5921 2.3902 40 1 13.0002 3.8034 -1.3042 41 1 7.7409 3.2583 0.0911 42 1 8.3986 2.3413 -1.2987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033290424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = 3.852685 kcal Electronic energy + Delta-G solvation = -27343.647788 eV Core-core repulsion = 23266.435265 eV Total energy + Delta-G solvation = -4077.212523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.20412 -40.76598 -39.21745 -37.69265 -36.94504 -35.32379 -33.42300 -32.28170 -31.05705 -29.66397 -28.64892 -27.83599 -27.07718 -24.11034 -23.28341 -22.88569 -21.27654 -20.60116 -19.47065 -17.89466 -17.56040 -17.41275 -17.20912 -16.46319 -16.12008 -15.60630 -15.30553 -15.02671 -14.94322 -14.39610 -14.32341 -13.97195 -13.66523 -13.44083 -13.28578 -12.93766 -12.89018 -12.70546 -12.62111 -12.47068 -12.39410 -12.24871 -11.92924 -11.50028 -11.40523 -11.30218 -11.10169 -11.04117 -10.54162 -10.10633 -9.95428 -9.51882 -9.26833 -9.17539 -9.06061 -8.69926 -8.49040 -7.12235 -6.35307 -3.21495 0.18600 0.48881 1.52215 2.40996 2.76971 3.14281 3.42215 3.49628 3.56094 3.71110 3.99619 4.16321 4.32078 4.45517 4.62735 4.75986 4.86054 4.92683 4.95051 5.05533 5.07685 5.13896 5.25715 5.30232 5.33679 5.36744 5.46728 5.48512 5.54082 5.58542 5.71784 5.80292 5.83802 6.09994 6.15390 6.31678 6.34876 6.50045 6.65741 6.73365 7.26736 7.61566 8.01414 8.30701 9.00601 9.53749 10.18566 11.14523 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.002532 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.454438 B =11056.795221 C =11426.749402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.025 4.025 3 C -0.131 4.131 4 C -0.066 4.066 5 C -0.163 4.163 6 C 0.558 3.442 7 O -0.521 6.521 8 N -0.593 5.593 9 C 0.056 3.944 10 C 0.125 3.875 11 H 0.113 0.887 12 C -0.140 4.140 13 C 0.119 3.881 14 N -0.608 5.608 15 C -0.329 4.329 16 H 0.080 0.920 17 C -0.017 4.017 18 N -0.918 5.918 19 Si 1.054 2.946 20 H -0.300 1.300 21 H -0.298 1.298 22 H -0.281 1.281 23 C 0.132 3.868 24 C 0.172 3.828 25 F -0.104 7.104 26 C -0.092 4.092 27 Cl -0.042 7.042 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.165 0.835 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.027 0.973 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.563 -6.122 3.820 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.027 4.027 3 C -0.150 4.150 4 C -0.084 4.084 5 C -0.167 4.167 6 C 0.345 3.655 7 O -0.397 6.397 8 N -0.325 5.325 9 C -0.086 4.086 10 C 0.021 3.979 11 H 0.131 0.869 12 C -0.178 4.178 13 C -0.006 4.006 14 N -0.336 5.336 15 C -0.455 4.455 16 H 0.098 0.902 17 C -0.217 4.217 18 N -0.559 5.559 19 Si 0.887 3.113 20 H -0.228 1.228 21 H -0.226 1.226 22 H -0.208 1.208 23 C 0.005 3.995 24 C 0.151 3.849 25 F -0.082 7.082 26 C -0.120 4.120 27 Cl -0.013 7.013 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.164 0.836 32 H 0.182 0.818 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -28.156 -6.586 4.807 29.313 hybrid contribution -1.043 -0.350 -1.227 1.648 sum -29.199 -6.936 3.580 30.224 Atomic orbital electron populations 1.20983 0.89227 1.04226 1.03639 1.19880 0.97305 0.90535 0.94942 1.21065 0.93733 0.97616 1.02548 1.22189 0.94514 0.98232 0.93498 1.19985 0.94508 0.92570 1.09636 1.17906 0.86009 0.82801 0.78755 1.90851 1.69041 1.33771 1.46046 1.47586 1.07260 1.19194 1.58417 1.22484 0.97583 0.89565 0.98976 1.22545 0.76608 1.01254 0.97479 0.86884 1.22952 0.97444 1.01037 0.96398 1.21924 0.95028 0.94536 0.89082 1.44758 1.08560 1.58488 1.21817 1.20097 0.92429 1.31035 1.01971 0.90248 1.25748 0.90569 0.98973 1.06454 1.70904 1.26803 1.50088 1.08074 0.84119 0.74104 0.76380 0.76685 1.22789 1.22608 1.20845 1.21792 0.87435 0.92809 0.97451 1.17324 0.87724 0.81705 0.98164 1.91633 1.79882 1.44179 1.92487 1.20737 0.90212 0.89262 1.11801 1.98383 1.75368 1.30636 1.96937 0.89762 0.90214 0.90331 0.83603 0.81774 0.91413 0.89724 0.90242 0.90872 0.91127 0.93336 0.95350 0.92699 0.95551 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 9.60 36.00 0.35 -0.21 16 2 C -0.03 -0.18 5.89 -104.52 -0.62 -0.80 16 3 C -0.13 -0.80 9.67 -39.65 -0.38 -1.18 16 4 C -0.07 -0.52 7.51 -39.19 -0.29 -0.82 16 5 C -0.16 -1.92 5.52 -104.92 -0.58 -2.50 16 6 C 0.56 8.44 7.45 -12.39 -0.09 8.35 16 7 O -0.52 -10.02 15.13 5.31 0.08 -9.94 16 8 N -0.59 -8.20 2.91 -172.51 -0.50 -8.70 16 9 C 0.06 0.53 7.45 59.85 0.45 0.97 16 10 C 0.12 2.14 3.46 -65.67 -0.23 1.91 16 11 H 0.11 2.19 7.03 -51.93 -0.37 1.83 16 12 C -0.14 -2.34 6.52 -24.89 -0.16 -2.50 16 13 C 0.12 2.58 4.58 -3.06 -0.01 2.56 16 14 N -0.61 -14.76 3.34 -169.94 -0.57 -15.33 16 15 C -0.33 -9.37 10.49 -15.06 -0.16 -9.52 16 16 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 17 C -0.02 -0.50 5.47 -17.43 -0.10 -0.60 16 18 N -0.92 -28.81 13.70 55.49 0.76 -28.05 16 19 Si 1.05 26.28 24.71 -169.99 -4.20 22.08 16 20 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 21 H -0.30 -7.13 7.08 56.52 0.40 -6.73 16 22 H -0.28 -6.40 5.22 56.52 0.30 -6.11 16 23 C 0.13 2.59 6.79 -2.41 -0.02 2.58 16 24 C 0.17 2.14 7.22 -38.93 -0.28 1.86 16 25 F -0.10 -1.56 15.43 2.25 0.03 -1.53 16 26 C -0.09 -0.91 6.31 -39.48 -0.25 -1.16 16 27 Cl -0.04 -0.39 26.93 -51.86 -1.40 -1.79 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.23 8.08 -51.93 -0.42 -0.19 16 30 H 0.08 0.38 6.88 -51.93 -0.36 0.03 16 31 H 0.15 0.44 8.06 -52.48 -0.42 0.01 16 32 H 0.17 1.00 4.40 -52.49 -0.23 0.77 16 33 H 0.07 0.54 6.96 -51.93 -0.36 0.18 16 34 H 0.08 0.60 4.95 -51.93 -0.26 0.34 16 35 H 0.08 0.76 6.39 -51.93 -0.33 0.43 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.03 6.37 -51.93 -0.33 0.70 16 38 H 0.05 1.12 6.85 -51.93 -0.36 0.76 16 39 H 0.03 0.64 4.25 -51.93 -0.22 0.42 16 40 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 41 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 343.81 15.07 5.18 5.18 Total: -1.00 -34.97 343.81 -7.95 -42.91 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -4.96 Total: -3.78 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.38 Total: -1.06 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.31 Total: -52.08 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.03 Total: -1.53 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -4.20 Total: 22.08 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.40 Total: -1.79 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.97 -7.95 -42.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033290424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.766 kcal (2) G-P(sol) polarization free energy of solvation -34.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds