Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31927 * 119.01782 * 2 1 4 4 C 1.32137 * 121.05729 * 180.02562 * 3 2 1 5 5 C 1.38989 * 119.12540 * 0.02562 * 4 3 2 6 6 Cl 1.73601 * 120.88517 * 179.97438 * 5 4 3 7 7 C 1.39628 * 118.22594 * 359.97438 * 5 4 3 8 8 C 1.48372 * 120.56377 * 179.97438 * 7 5 4 9 9 O 1.21496 * 119.99663 * 0.02562 * 8 7 5 10 10 N 1.34774 * 119.99992 * 180.02562 * 8 7 5 11 11 C 1.46504 * 119.99658 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47126 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.50925 * 60.10149 * 12 11 10 14 14 C 1.53711 * 109.48951 * 180.36200 * 12 11 10 15 15 N 1.47146 * 108.16509 * 172.39691 * 14 12 11 16 16 C 1.36937 * 120.97935 * 129.43371 * 15 14 12 17 17 H 1.08003 * 120.00119 * 333.87097 * 16 15 14 18 18 C 1.38818 * 120.00012 * 153.87103 * 16 15 14 19 19 N 1.31616 * 119.99804 * 159.44782 * 18 16 15 20 20 Si 1.86798 * 119.99907 * 339.17353 * 18 16 15 21 21 H 1.48496 * 109.46963 * 94.51933 * 20 18 16 22 22 H 1.48502 * 109.46941 * 214.52256 * 20 18 16 23 23 H 1.48502 * 109.46975 * 334.52054 * 20 18 16 24 24 C 1.47149 * 118.03987 * 309.16579 * 15 14 12 25 25 C 1.53298 * 108.38351 * 50.78081 * 24 15 14 26 26 O 1.42956 * 109.22418 * 307.70003 * 25 24 15 27 27 N 1.31522 * 119.02181 * 180.27565 * 2 1 3 28 28 H 1.08997 * 109.46987 * 90.00171 * 1 2 3 29 29 H 1.08997 * 109.47025 * 209.99578 * 1 2 3 30 30 H 1.08994 * 109.47345 * 330.00047 * 1 2 3 31 31 H 1.08006 * 120.44006 * 180.02562 * 4 3 2 32 32 H 0.96995 * 120.00115 * 0.02562 * 10 8 7 33 33 H 1.08999 * 109.47248 * 60.00466 * 11 10 8 34 34 H 1.08995 * 109.47648 * 300.00278 * 11 10 8 35 35 H 1.09004 * 109.83038 * 52.72085 * 14 12 11 36 36 H 1.08994 * 109.74690 * 292.03139 * 14 12 11 37 37 H 0.97004 * 119.99619 * 179.97438 * 19 18 16 38 38 H 1.09003 * 109.68718 * 170.50603 * 24 15 14 39 39 H 1.09000 * 109.68352 * 291.02167 * 24 15 14 40 40 H 1.09002 * 109.50955 * 67.62852 * 25 24 15 41 41 H 1.09000 * 109.50991 * 187.72749 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1469 1.1537 0.0000 4 6 3.4674 1.2007 -0.0005 5 6 4.1867 0.0114 -0.0016 6 17 5.9227 0.0199 -0.0030 7 6 3.4757 -1.1903 -0.0015 8 6 4.1911 -2.4902 -0.0032 9 8 5.4058 -2.5150 -0.0042 10 7 3.4935 -3.6433 -0.0037 11 6 4.2000 -4.9268 -0.0060 12 6 3.1822 -6.0691 -0.0054 13 1 2.5563 -5.9995 -0.8951 14 6 3.9230 -7.4160 0.0014 15 7 2.9293 -8.4852 0.1868 16 6 2.8944 -9.5680 -0.6507 17 1 3.2680 -9.4821 -1.6604 18 6 2.3790 -10.7763 -0.2019 19 7 1.9680 -11.6786 -1.0675 20 14 2.2758 -11.1247 1.6304 21 1 0.9259 -10.7578 2.1287 22 1 2.5176 -12.5695 1.8739 23 1 3.3019 -10.3237 2.3451 24 6 1.9779 -8.3595 1.3023 25 6 1.3352 -6.9693 1.2353 26 8 2.3632 -5.9785 1.1629 27 7 2.1450 -1.1501 -0.0055 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 3.9811 2.1508 -0.0001 32 1 2.5238 -3.6235 -0.0033 33 1 4.8263 -4.9983 0.8832 34 1 4.8243 -4.9964 -0.8966 35 1 4.6429 -7.4379 0.8197 36 1 4.4407 -7.5563 -0.9474 37 1 1.6082 -12.5230 -0.7539 38 1 1.2067 -9.1249 1.2153 39 1 2.5050 -8.4755 2.2493 40 1 0.7026 -6.9030 0.3501 41 1 0.7314 -6.8040 2.1276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035537093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = 4.588672 kcal Electronic energy + Delta-G solvation = -26874.472994 eV Core-core repulsion = 22817.212347 eV Total energy + Delta-G solvation = -4057.260647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77690 -39.70356 -38.70493 -37.07619 -35.21642 -34.62213 -34.34220 -33.46795 -31.73261 -31.22146 -28.85003 -28.00269 -26.66801 -25.32870 -23.56041 -23.19733 -22.06082 -21.08133 -20.11583 -18.77414 -18.17436 -17.00798 -16.58075 -16.41774 -16.10872 -15.94461 -15.66272 -15.46083 -14.87493 -14.39300 -14.28481 -14.10004 -13.96692 -13.64275 -13.44639 -13.42820 -12.86493 -12.67112 -12.43167 -12.22304 -11.99057 -11.85453 -11.77382 -11.73666 -11.38916 -11.27703 -10.91728 -10.60386 -10.44618 -10.32647 -9.88386 -9.63734 -9.59539 -9.57794 -9.46802 -9.13876 -8.64342 -7.09882 -6.03886 -3.41150 -0.11071 0.23261 1.55124 2.41950 2.66706 3.23403 3.24473 3.28803 3.42574 3.43189 3.45628 3.91008 4.03466 4.15547 4.44031 4.48584 4.70171 4.86518 5.10771 5.13698 5.22621 5.26153 5.30976 5.32220 5.52257 5.65084 5.72986 5.76522 5.83113 5.92580 6.06798 6.10902 6.14120 6.29507 6.38855 6.45288 6.65182 7.24064 7.42398 7.53321 7.78928 7.92871 8.21436 8.79189 9.60167 9.95589 11.11571 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.002509 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.421015 B =11155.788474 C =12046.440324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.319 3.681 3 N -0.493 5.493 4 C 0.167 3.833 5 C -0.111 4.111 6 Cl 0.002 6.998 7 C 0.151 3.849 8 C 0.560 3.440 9 O -0.507 6.507 10 N -0.692 5.692 11 C 0.129 3.871 12 C 0.062 3.938 13 H 0.066 0.934 14 C 0.126 3.874 15 N -0.607 5.607 16 C -0.264 4.264 17 H 0.089 0.911 18 C 0.024 3.976 19 N -0.906 5.906 20 Si 0.883 3.117 21 H -0.288 1.288 22 H -0.301 1.301 23 H -0.269 1.269 24 C 0.089 3.911 25 C 0.050 3.950 26 O -0.385 6.385 27 N -0.479 5.479 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.185 0.815 32 H 0.415 0.585 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.264 0.736 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.052 0.948 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 26.671 2.613 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 N -0.208 5.208 4 C -0.001 4.001 5 C -0.144 4.144 6 Cl 0.031 6.969 7 C 0.002 3.998 8 C 0.342 3.658 9 O -0.381 6.381 10 N -0.344 5.344 11 C 0.006 3.994 12 C 0.002 3.998 13 H 0.084 0.916 14 C -0.001 4.001 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.106 0.894 18 C -0.175 4.175 19 N -0.548 5.548 20 Si 0.713 3.287 21 H -0.216 1.216 22 H -0.230 1.230 23 H -0.194 1.194 24 C -0.036 4.036 25 C -0.028 4.028 26 O -0.305 6.305 27 N -0.197 5.197 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.202 0.798 32 H 0.251 0.749 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.458 26.499 2.693 26.640 hybrid contribution 0.413 -0.559 0.861 1.107 sum -0.045 25.941 3.554 26.183 Atomic orbital electron populations 1.20666 0.84448 1.04920 1.04555 1.23425 0.98725 0.82706 0.89858 1.68335 1.08974 1.30332 1.13156 1.23443 0.89209 0.97445 0.90045 1.22890 0.90052 0.95951 1.05461 1.98449 1.03967 1.98603 1.95901 1.21691 0.89582 0.94286 0.94247 1.17619 0.86711 0.82724 0.78752 1.90895 1.11986 1.86470 1.48771 1.45763 1.11597 1.04903 1.72116 1.21551 0.94454 0.79961 1.03482 1.22946 0.92604 0.95254 0.88984 0.91561 1.21551 0.91294 0.86498 1.00790 1.44358 1.33029 1.22324 1.33458 1.18912 1.39730 0.87050 0.93468 0.89352 1.25239 0.99194 0.95675 0.97387 1.69827 1.42849 1.08628 1.33504 0.86967 0.77805 0.76512 0.87427 1.21597 1.22956 1.19417 1.22019 0.93872 0.96159 0.91549 1.23062 0.89315 0.89183 1.01212 1.87806 1.46218 1.53568 1.42867 1.68359 1.07423 1.31022 1.12874 0.88947 0.88860 0.89092 0.79775 0.74863 0.90149 0.89406 0.94632 0.90669 0.92619 0.90147 0.94673 0.92926 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.31 36.00 0.37 -0.14 16 2 C 0.32 2.97 7.64 -157.32 -1.20 1.77 16 3 N -0.49 -4.49 10.31 -10.70 -0.11 -4.60 16 4 C 0.17 1.37 11.14 -17.14 -0.19 1.18 16 5 C -0.11 -1.14 6.40 -38.78 -0.25 -1.39 16 6 Cl 0.00 0.02 26.25 -51.86 -1.36 -1.34 16 7 C 0.15 1.79 6.79 -82.61 -0.56 1.23 16 8 C 0.56 7.54 7.82 -12.09 -0.09 7.45 16 9 O -0.51 -7.79 14.15 5.37 0.08 -7.71 16 10 N -0.69 -8.95 5.44 -61.08 -0.33 -9.28 16 11 C 0.13 1.75 5.37 -4.04 -0.02 1.73 16 12 C 0.06 0.98 2.88 -26.36 -0.08 0.90 16 13 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 14 C 0.13 2.37 6.05 -3.32 -0.02 2.35 16 15 N -0.61 -14.07 2.83 -171.57 -0.49 -14.55 16 16 C -0.26 -7.18 10.09 -15.06 -0.15 -7.34 16 17 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 18 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 19 N -0.91 -27.22 13.97 55.49 0.78 -26.44 16 20 Si 0.88 21.94 24.32 -169.99 -4.13 17.80 16 21 H -0.29 -6.84 6.69 56.52 0.38 -6.46 16 22 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 23 H -0.27 -6.63 6.42 56.52 0.36 -6.27 16 24 C 0.09 1.90 4.38 -3.53 -0.02 1.88 16 25 C 0.05 0.86 6.98 37.31 0.26 1.12 16 26 O -0.39 -6.48 10.13 -35.23 -0.36 -6.84 16 27 N -0.48 -5.23 9.59 -7.32 -0.07 -5.30 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.19 0.86 8.06 -52.48 -0.42 0.44 16 32 H 0.41 5.11 7.73 -40.82 -0.32 4.79 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.36 7.96 -51.93 -0.41 0.95 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.08 1.83 4.68 -51.93 -0.24 1.59 16 39 H 0.04 0.76 6.81 -51.93 -0.35 0.41 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -32.49 353.21 -7.89 -40.38 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.17 Total: 1.23 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: -2.04 Total: 11.34 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.22 Total: -60.18 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.28 Total: -14.55 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.13 Total: 17.80 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.36 Total: -1.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.49 -7.89 -40.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035537093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.973 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds