Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31934 * 119.01560 * 2 1 4 4 C 1.32140 * 121.05210 * 180.02562 * 3 2 1 5 5 C 1.38990 * 119.12361 * 359.97438 * 4 3 2 6 6 Cl 1.73598 * 120.88253 * 179.97438 * 5 4 3 7 7 C 1.39632 * 118.23109 * 0.25899 * 5 4 3 8 8 C 1.48364 * 120.56522 * 179.74861 * 7 5 4 9 9 O 1.21485 * 119.99890 * 359.97438 * 8 7 5 10 10 N 1.34781 * 120.00027 * 179.97438 * 8 7 5 11 11 C 1.46494 * 119.99681 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47059 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.51066 * 304.99741 * 12 11 10 14 14 C 1.53294 * 109.51628 * 184.89754 * 12 11 10 15 15 N 1.47152 * 108.38610 * 187.77315 * 14 12 11 16 16 C 1.36942 * 120.98143 * 230.55704 * 15 14 12 17 17 H 1.08003 * 119.99931 * 26.23987 * 16 15 14 18 18 C 1.38808 * 120.00138 * 206.24165 * 16 15 14 19 19 N 1.31619 * 119.99939 * 16.90412 * 18 16 15 20 20 Si 1.86796 * 119.99990 * 196.90561 * 18 16 15 21 21 H 1.48496 * 109.47192 * 60.00134 * 20 18 16 22 22 H 1.48505 * 109.46871 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47031 * 299.99440 * 20 18 16 24 24 C 1.47142 * 118.03676 * 50.53179 * 15 14 12 25 25 C 1.53292 * 108.38837 * 309.46847 * 24 15 14 26 26 O 1.42954 * 109.26687 * 52.27633 * 25 24 15 27 27 N 1.31520 * 119.01676 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47549 * 89.99414 * 1 2 3 29 29 H 1.08995 * 109.47515 * 210.00133 * 1 2 3 30 30 H 1.09008 * 109.47119 * 330.00055 * 1 2 3 31 31 H 1.07999 * 120.43368 * 180.02562 * 4 3 2 32 32 H 0.96997 * 119.99726 * 0.02562 * 10 8 7 33 33 H 1.09004 * 109.47534 * 299.99800 * 11 10 8 34 34 H 1.08996 * 109.47619 * 60.00302 * 11 10 8 35 35 H 1.09003 * 109.67973 * 307.49764 * 14 12 11 36 36 H 1.08998 * 109.68064 * 68.00950 * 14 12 11 37 37 H 0.96995 * 120.00521 * 180.02562 * 19 18 16 38 38 H 1.08999 * 109.68217 * 69.18924 * 24 15 14 39 39 H 1.09005 * 109.68402 * 189.70686 * 24 15 14 40 40 H 1.08996 * 109.51604 * 172.22981 * 25 24 15 41 41 H 1.09004 * 109.51186 * 292.37640 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1538 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1867 0.0113 -0.0005 6 17 5.9227 0.0197 -0.0018 7 6 3.4757 -1.1904 -0.0055 8 6 4.1911 -2.4902 -0.0114 9 8 5.4057 -2.5151 -0.0123 10 7 3.4934 -3.6434 -0.0157 11 6 4.1998 -4.9267 -0.0209 12 6 3.1820 -6.0691 -0.0257 13 1 2.4998 -5.9524 0.8164 14 6 3.9162 -7.4096 0.0923 15 7 2.9392 -8.4926 -0.1026 16 6 2.8475 -9.5281 0.7889 17 1 3.1480 -9.3844 1.8163 18 6 2.3685 -10.7624 0.3721 19 7 2.3169 -11.0490 -0.9115 20 14 1.7971 -12.0167 1.6328 21 1 0.6785 -11.4471 2.4260 22 1 1.3345 -13.2437 0.9358 23 1 2.9237 -12.3565 2.5387 24 6 2.0633 -8.4298 -1.2832 25 6 1.4194 -7.0396 -1.3342 26 8 2.4408 -6.0432 -1.2479 27 7 2.1450 -1.1501 -0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5139 31 1 3.9811 2.1507 -0.0001 32 1 2.5237 -3.6235 -0.0153 33 1 4.8249 -4.9939 -0.9113 34 1 4.8254 -5.0008 0.8686 35 1 4.6910 -7.4723 -0.6719 36 1 4.3677 -7.4952 1.0806 37 1 1.9818 -11.9113 -1.2029 38 1 2.6515 -8.5952 -2.1859 39 1 1.2876 -9.1917 -1.2059 40 1 0.8763 -6.9240 -2.2722 41 1 0.7301 -6.9268 -0.4974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035537096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -1.540965 kcal Electronic energy + Delta-G solvation = -26776.853291 eV Core-core repulsion = 22719.326843 eV Total energy + Delta-G solvation = -4057.526448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74255 -39.61900 -38.45571 -37.04200 -35.06250 -34.50396 -34.24075 -33.43625 -31.57898 -30.69092 -28.82046 -27.76495 -26.47572 -25.10695 -23.51440 -23.16174 -21.86959 -21.02049 -19.76908 -18.70507 -18.12174 -16.93866 -16.52300 -16.29472 -15.98306 -15.81969 -15.55191 -14.98287 -14.80184 -14.40187 -14.19125 -13.94079 -13.78479 -13.41340 -13.25246 -13.09016 -12.84028 -12.76241 -12.44804 -12.19132 -11.85616 -11.75963 -11.55304 -11.35616 -11.14707 -10.86873 -10.76761 -10.54941 -10.42341 -10.31533 -10.00738 -9.72475 -9.60435 -9.53366 -9.10621 -9.06980 -8.56966 -6.79044 -5.87250 -3.31158 -0.07680 0.26329 1.58323 2.46306 2.72404 3.27211 3.32209 3.33340 3.39239 3.39984 3.45908 3.99059 4.17452 4.22070 4.40502 4.51979 4.89797 5.07899 5.13429 5.24636 5.30183 5.34664 5.43696 5.47563 5.74649 5.75749 5.78656 5.97347 6.11635 6.14230 6.23490 6.33916 6.39992 6.45435 6.71452 7.07042 7.28657 7.46504 7.48947 7.67439 7.82208 7.98409 8.30245 9.08179 9.70831 10.27491 11.20898 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.002396 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.113825 B =11684.217029 C =12502.330233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.319 3.681 3 N -0.494 5.494 4 C 0.167 3.833 5 C -0.111 4.111 6 Cl 0.002 6.998 7 C 0.151 3.849 8 C 0.559 3.441 9 O -0.507 6.507 10 N -0.692 5.692 11 C 0.129 3.871 12 C 0.065 3.935 13 H 0.060 0.940 14 C 0.122 3.878 15 N -0.594 5.594 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.389 6.389 27 N -0.479 5.479 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.185 0.815 32 H 0.414 0.586 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.256 0.744 38 H 0.028 0.972 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 24.537 1.309 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 N -0.208 5.208 4 C -0.002 4.002 5 C -0.144 4.144 6 Cl 0.031 6.969 7 C 0.002 3.998 8 C 0.341 3.659 9 O -0.382 6.382 10 N -0.343 5.343 11 C 0.005 3.995 12 C 0.005 3.995 13 H 0.078 0.922 14 C -0.005 4.005 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.736 3.264 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.208 1.208 24 C 0.014 3.986 25 C -0.038 4.038 26 O -0.309 6.309 27 N -0.197 5.197 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.202 0.798 32 H 0.250 0.750 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.501 24.363 1.091 24.434 hybrid contribution 0.239 -0.885 0.689 1.147 sum -1.262 23.478 1.780 23.579 Atomic orbital electron populations 1.20666 0.84464 1.04857 1.04579 1.23424 0.98720 0.82718 0.89886 1.68338 1.08974 1.30328 1.13199 1.23437 0.89212 0.97434 0.90084 1.22889 0.90048 0.95946 1.05476 1.98448 1.03976 1.98603 1.95903 1.21715 0.89572 0.94332 0.94148 1.17619 0.86724 0.82719 0.78813 1.90890 1.11990 1.86460 1.48813 1.45813 1.11527 1.05001 1.72005 1.21557 0.94606 0.79955 1.03348 1.22809 0.93513 0.95379 0.87839 0.92208 1.21433 0.91956 0.87142 0.99974 1.44056 1.37364 1.23302 1.27021 1.19154 1.40651 0.88726 0.90093 0.91362 1.25047 1.01878 0.96707 0.95949 1.70021 1.48993 1.22442 1.13213 0.86315 0.78935 0.80553 0.80639 1.20962 1.21535 1.20778 1.21448 0.94967 0.92961 0.89263 1.23327 0.89449 0.90765 1.00235 1.87793 1.49910 1.55407 1.37750 1.68364 1.07443 1.31000 1.12868 0.88926 0.88897 0.89121 0.79791 0.74985 0.90126 0.89603 0.95161 0.91709 0.93407 0.95357 0.88743 0.90012 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.31 36.01 0.37 -0.17 16 2 C 0.32 3.07 7.64 -157.31 -1.20 1.87 16 3 N -0.49 -4.64 10.31 -10.70 -0.11 -4.75 16 4 C 0.17 1.41 11.14 -17.14 -0.19 1.22 16 5 C -0.11 -1.18 6.40 -38.78 -0.25 -1.43 16 6 Cl 0.00 0.02 26.25 -51.86 -1.36 -1.34 16 7 C 0.15 1.86 6.79 -82.61 -0.56 1.30 16 8 C 0.56 7.86 7.82 -12.09 -0.09 7.76 16 9 O -0.51 -8.09 14.14 5.38 0.08 -8.01 16 10 N -0.69 -9.46 5.50 -61.09 -0.34 -9.80 16 11 C 0.13 1.89 5.34 -4.04 -0.02 1.86 16 12 C 0.06 1.10 2.81 -26.58 -0.07 1.03 16 13 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 14 C 0.12 2.49 6.02 -3.53 -0.02 2.47 16 15 N -0.59 -14.62 3.05 -171.84 -0.52 -15.15 16 16 C -0.26 -6.89 9.65 -15.06 -0.15 -7.04 16 17 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 18 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 19 N -0.90 -25.70 11.14 55.49 0.62 -25.08 16 20 Si 0.91 21.20 29.59 -169.99 -5.03 16.17 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.14 3.26 5.45 -3.54 -0.02 3.25 16 25 C 0.04 0.76 6.98 37.31 0.26 1.02 16 26 O -0.39 -7.19 10.33 -35.23 -0.36 -7.56 16 27 N -0.48 -5.42 9.59 -7.31 -0.07 -5.49 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.19 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.41 5.38 7.86 -40.82 -0.32 5.06 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.25 7.96 -51.93 -0.41 0.83 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -31.47 360.17 -8.96 -40.43 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.25 Total: 2.02 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: -2.03 Total: 13.14 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.42 Total: -60.27 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.29 Total: -15.57 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.36 Total: -1.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.47 -8.96 -40.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035537096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.891 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds