Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31925 * 119.02125 * 2 1 4 4 C 1.32138 * 121.06057 * 179.97438 * 3 2 1 5 5 C 1.38991 * 119.11977 * 0.02562 * 4 3 2 6 6 Cl 1.73602 * 120.88454 * 180.02562 * 5 4 3 7 7 C 1.39631 * 118.23145 * 0.02562 * 5 4 3 8 8 C 1.48367 * 120.56564 * 180.02562 * 7 5 4 9 9 O 1.21487 * 119.99931 * 6.25498 * 8 7 5 10 10 N 1.34771 * 120.00119 * 186.25359 * 8 7 5 11 11 C 1.46501 * 120.00093 * 356.80529 * 10 8 7 12 12 C 1.46500 * 120.00284 * 176.80115 * 10 8 7 13 13 H 1.09001 * 110.88434 * 0.69845 * 12 10 8 14 14 C 1.54906 * 111.00712 * 124.58039 * 12 10 8 15 15 N 1.47419 * 104.83294 * 155.12149 * 14 12 10 16 16 C 1.36939 * 125.64675 * 155.83652 * 15 14 12 17 17 H 1.07996 * 120.00224 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99879 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00097 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00109 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46984 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47146 * 119.99571 * 20 18 16 23 23 H 1.48496 * 109.47088 * 240.00059 * 20 18 16 24 24 C 1.47025 * 108.70594 * 335.87804 * 15 14 12 25 25 C 1.54322 * 107.27049 * 1.05245 * 24 15 14 26 26 H 1.08995 * 110.72523 * 263.83569 * 25 24 15 27 27 O 1.42901 * 110.72048 * 140.55655 * 25 24 15 28 28 N 1.31528 * 119.01771 * 180.26427 * 2 1 3 29 29 H 1.08997 * 109.47294 * 89.99796 * 1 2 3 30 30 H 1.09004 * 109.46594 * 210.00026 * 1 2 3 31 31 H 1.08998 * 109.46613 * 329.99310 * 1 2 3 32 32 H 1.08000 * 120.44194 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46966 * 276.07943 * 11 10 8 34 34 H 1.08994 * 109.47202 * 36.07628 * 11 10 8 35 35 H 1.09000 * 109.47600 * 156.08017 * 11 10 8 36 36 H 1.08996 * 110.36737 * 273.96629 * 14 12 10 37 37 H 1.09004 * 110.36469 * 36.28588 * 14 12 10 38 38 H 0.97006 * 119.99617 * 180.02562 * 19 18 16 39 39 H 1.08994 * 109.88412 * 120.47430 * 24 15 14 40 40 H 1.09004 * 109.87985 * 241.64341 * 24 15 14 41 41 H 0.96702 * 113.99457 * 66.47770 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1536 0.0000 4 6 3.4676 1.2006 0.0005 5 6 4.1867 0.0112 0.0005 6 17 5.9227 0.0196 0.0018 7 6 3.4757 -1.1905 -0.0006 8 6 4.1911 -2.4904 -0.0001 9 8 5.4001 -2.5183 0.1159 10 7 3.4997 -3.6401 -0.1283 11 6 2.0366 -3.6112 -0.1977 12 6 4.2111 -4.9188 -0.1982 13 1 5.2880 -4.7691 -0.1207 14 6 3.7063 -5.8956 0.8929 15 7 4.0034 -7.2390 0.3636 16 6 4.1770 -8.3717 1.1133 17 1 4.0981 -8.3245 2.1893 18 6 4.4544 -9.5807 0.4901 19 7 4.5501 -9.6384 -0.8214 20 14 4.6904 -11.1261 1.5126 21 1 4.5327 -10.7962 2.9519 22 1 3.6759 -12.1378 1.1222 23 1 6.0509 -11.6727 1.2768 24 6 4.0835 -7.1611 -1.1024 25 6 3.8487 -5.6876 -1.4964 26 1 2.8053 -5.5216 -1.7643 27 8 4.7140 -5.3066 -2.5679 28 7 2.1450 -1.1502 -0.0053 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3632 0.8899 0.5139 32 1 3.9813 2.1506 0.0001 33 1 1.6255 -3.5789 0.8113 34 1 1.7164 -2.7270 -0.7489 35 1 1.6792 -4.5060 -0.7072 36 1 4.2414 -5.7293 1.8279 37 1 2.6333 -5.7756 1.0425 38 1 4.7435 -10.4833 -1.2568 39 1 5.0700 -7.4817 -1.4373 40 1 3.3148 -7.7914 -1.5496 41 1 4.5292 -5.7589 -3.4024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047550581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = 2.009376 kcal Electronic energy + Delta-G solvation = -27770.643425 eV Core-core repulsion = 23713.270932 eV Total energy + Delta-G solvation = -4057.372493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.63526 -41.05731 -39.44439 -37.85468 -36.76977 -36.51981 -35.18100 -34.13219 -33.71283 -30.47682 -29.40051 -29.12375 -28.05442 -27.04377 -25.98738 -24.34376 -22.43511 -22.22467 -20.72446 -19.62102 -19.02600 -18.56365 -18.24269 -17.53439 -17.33660 -17.08959 -16.60491 -16.19968 -15.93613 -15.71288 -15.52811 -14.78461 -14.59538 -14.52606 -14.34437 -14.08420 -13.89136 -13.63441 -13.42755 -13.20696 -13.18842 -13.06334 -12.84166 -12.77492 -12.69242 -12.51461 -12.28178 -12.06185 -12.03346 -11.89264 -11.64173 -11.36305 -10.94963 -10.78963 -10.37297 -10.16933 -9.71994 -8.97593 -7.88954 -5.26926 -0.91402 -0.44748 0.80501 1.45633 1.47721 1.48184 1.54308 1.58664 2.41459 2.45491 2.53855 2.80711 3.03608 3.12533 3.32688 3.33809 3.54673 3.76320 3.81481 4.00490 4.04859 4.20739 4.37081 4.42448 4.45800 4.69073 4.76113 4.77360 4.80679 4.83610 4.97371 5.15882 5.31642 5.35516 5.39003 5.42648 5.47069 5.64630 6.11291 6.16306 6.63537 6.81989 6.84636 7.03138 7.67652 8.30274 9.20909 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018727 B = 0.002964 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.795159 B = 9443.997393 C =10007.245018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.311 3.689 3 N -0.495 5.495 4 C 0.184 3.816 5 C -0.120 4.120 6 Cl -0.011 7.011 7 C 0.139 3.861 8 C 0.553 3.447 9 O -0.537 6.537 10 N -0.574 5.574 11 C 0.068 3.932 12 C 0.144 3.856 13 H 0.084 0.916 14 C 0.137 3.863 15 N -0.620 5.620 16 C -0.246 4.246 17 H 0.086 0.914 18 C -0.062 4.062 19 N -0.949 5.949 20 Si 0.981 3.019 21 H -0.265 1.265 22 H -0.288 1.288 23 H -0.294 1.294 24 C 0.165 3.835 25 C 0.085 3.915 26 H 0.087 0.913 27 O -0.571 6.571 28 N -0.477 5.477 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.219 0.781 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.050 0.950 38 H 0.249 0.751 39 H 0.020 0.980 40 H 0.026 0.974 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.031 23.889 -0.879 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 N -0.210 5.210 4 C 0.015 3.985 5 C -0.153 4.153 6 Cl 0.018 6.982 7 C -0.009 4.009 8 C 0.339 3.661 9 O -0.413 6.413 10 N -0.304 5.304 11 C -0.073 4.073 12 C 0.039 3.961 13 H 0.102 0.898 14 C 0.010 3.990 15 N -0.348 5.348 16 C -0.374 4.374 17 H 0.104 0.896 18 C -0.255 4.255 19 N -0.597 5.597 20 Si 0.809 3.191 21 H -0.190 1.190 22 H -0.215 1.215 23 H -0.221 1.221 24 C 0.039 3.961 25 C 0.024 3.976 26 H 0.105 0.895 27 O -0.378 6.378 28 N -0.196 5.196 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.236 0.764 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.044 0.956 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -9.953 23.994 -0.383 25.979 hybrid contribution 1.477 -1.738 -0.132 2.285 sum -8.476 22.256 -0.515 23.821 Atomic orbital electron populations 1.20846 0.81769 1.05999 1.05758 1.24360 1.00352 0.82483 0.88273 1.68461 1.08971 1.30334 1.13248 1.23974 0.89007 0.97676 0.87814 1.23008 0.89579 0.96308 1.06360 1.98448 1.05106 1.98612 1.96019 1.21325 0.90574 0.93128 0.95825 1.18107 0.86395 0.83482 0.78112 1.90861 1.13988 1.86543 1.49925 1.47632 1.09137 1.04320 1.69343 1.22642 0.76164 1.04773 1.03745 1.22026 0.97374 0.82064 0.94635 0.89783 1.21838 0.98560 0.83773 0.94812 1.44503 1.83923 1.03865 1.02505 1.19495 1.41386 0.85769 0.90759 0.89645 1.25668 1.01895 1.00833 0.97098 1.70150 1.55988 1.25190 1.08390 0.84972 0.76764 0.79051 0.78280 1.18969 1.21470 1.22140 1.21577 0.98901 0.91350 0.84227 1.23319 0.93559 0.93718 0.86961 0.89546 1.86460 1.60097 1.68699 1.22540 1.68873 1.06259 1.30275 1.14169 0.87425 0.88014 0.87787 0.76409 0.91240 0.86184 0.91216 0.93913 0.93207 0.94197 0.96222 0.95582 0.75712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 10.31 71.24 0.73 0.05 16 2 C 0.31 5.06 7.64 138.79 1.06 6.12 16 3 N -0.50 -8.11 10.31 -187.76 -1.94 -10.04 16 4 C 0.18 2.90 11.14 84.83 0.94 3.84 16 5 C -0.12 -2.68 6.40 22.79 0.15 -2.53 16 6 Cl -0.01 -0.27 26.27 -2.72 -0.07 -0.34 16 7 C 0.14 3.60 6.66 41.98 0.28 3.88 16 8 C 0.55 18.34 7.66 86.94 0.67 19.01 16 9 O -0.54 -21.15 13.56 -3.67 -0.05 -21.20 16 10 N -0.57 -18.38 2.91 -817.65 -2.38 -20.76 16 11 C 0.07 1.62 8.09 127.77 1.03 2.66 16 12 C 0.14 5.63 3.17 46.38 0.15 5.78 16 13 H 0.08 3.88 7.01 -2.39 -0.02 3.86 16 14 C 0.14 5.72 6.81 86.86 0.59 6.32 16 15 N -0.62 -32.05 3.39 -692.01 -2.35 -34.40 16 16 C -0.25 -13.76 10.28 84.03 0.86 -12.89 16 17 H 0.09 4.58 7.83 -2.91 -0.02 4.55 16 18 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 19 N -0.95 -56.34 10.31 21.65 0.22 -56.12 16 20 Si 0.98 45.56 29.55 68.60 2.03 47.59 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 C 0.17 8.13 5.15 86.73 0.45 8.58 16 25 C 0.08 3.26 3.86 31.78 0.12 3.38 16 26 H 0.09 2.86 6.27 -2.39 -0.01 2.84 16 27 O -0.57 -21.15 13.39 -148.98 -1.99 -23.15 16 28 N -0.48 -9.94 6.08 -177.05 -1.08 -11.02 16 29 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.22 1.74 8.06 -2.91 -0.02 1.71 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.12 2.53 5.15 -3.51 -0.02 2.51 16 35 H 0.07 1.64 6.27 -2.39 -0.01 1.62 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.89 7.14 -2.39 -0.02 1.88 16 38 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 39 H 0.02 1.11 7.29 -2.39 -0.02 1.10 16 40 H 0.03 1.38 7.51 -2.38 -0.02 1.36 16 41 H 0.39 11.03 9.12 -74.06 -0.68 10.35 16 Total: -1.00 -74.60 350.43 0.31 -74.29 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.41 Total: 13.98 kcal Atomic # 6 Polarization: 33.66 SS G_CDS: 7.50 Total: 41.16 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -7.52 Total: -132.33 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -2.04 Total: -44.34 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.07 Total: -0.34 kcal Total: -74.60 0.31 -74.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047550581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.302 kcal (2) G-P(sol) polarization free energy of solvation -74.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds