Wall clock time and date at job start Sat Apr 11 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31930 * 119.01836 * 2 1 4 4 C 1.32135 * 121.06078 * 180.02562 * 3 2 1 5 5 C 1.38995 * 119.11999 * 359.73246 * 4 3 2 6 6 Cl 1.73602 * 120.88400 * 180.29369 * 5 4 3 7 7 C 1.39631 * 118.22801 * 0.53097 * 5 4 3 8 8 C 1.48367 * 120.56322 * 179.73911 * 7 5 4 9 9 O 1.21487 * 119.99902 * 359.72669 * 8 7 5 10 10 N 1.34783 * 119.99858 * 179.72335 * 8 7 5 11 11 C 1.46503 * 119.99693 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46719 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.68163 * 59.10850 * 12 11 10 14 14 C 1.53294 * 109.67892 * 179.62377 * 12 11 10 15 15 O 1.42958 * 109.22488 * 172.06232 * 14 12 11 16 16 C 1.42966 * 114.16582 * 297.41877 * 15 14 12 17 17 C 1.53295 * 109.21998 * 62.57883 * 16 15 14 18 18 N 1.47153 * 109.68182 * 298.58605 * 12 11 10 19 19 C 1.36936 * 120.98090 * 9.67706 * 18 12 11 20 20 H 1.08001 * 120.00100 * 329.56554 * 19 18 12 21 21 C 1.38808 * 119.99721 * 149.56447 * 19 18 12 22 22 N 1.31624 * 119.99684 * 163.24215 * 21 19 18 23 23 Si 1.86800 * 120.00351 * 343.24156 * 21 19 18 24 24 H 1.48498 * 109.47287 * 88.92607 * 23 21 19 25 25 H 1.48499 * 109.46950 * 208.92725 * 23 21 19 26 26 H 1.48503 * 109.46819 * 328.92494 * 23 21 19 27 27 N 1.31521 * 119.02147 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46790 * 269.97494 * 1 2 3 29 29 H 1.08999 * 109.47521 * 29.97364 * 1 2 3 30 30 H 1.09004 * 109.47274 * 149.97493 * 1 2 3 31 31 H 1.08000 * 120.44094 * 180.02562 * 4 3 2 32 32 H 0.96993 * 120.00008 * 0.02562 * 10 8 7 33 33 H 1.08995 * 109.47270 * 60.00137 * 11 10 8 34 34 H 1.09005 * 109.46850 * 299.99484 * 11 10 8 35 35 H 1.09002 * 109.51182 * 291.98350 * 14 12 11 36 36 H 1.09002 * 109.51387 * 52.08500 * 14 12 11 37 37 H 1.08999 * 109.51414 * 182.50199 * 16 15 14 38 38 H 1.09004 * 109.51100 * 302.65381 * 16 15 14 39 39 H 1.09000 * 109.68409 * 67.42261 * 17 16 15 40 40 H 1.09004 * 109.68036 * 187.93686 * 17 16 15 41 41 H 0.97005 * 119.99686 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2008 -0.0005 5 6 4.1867 0.0114 0.0046 6 17 5.9227 0.0199 0.0118 7 6 3.4758 -1.1904 -0.0013 8 6 4.1912 -2.4902 -0.0020 9 8 5.4058 -2.5150 -0.0025 10 7 3.4935 -3.6434 -0.0021 11 6 4.2000 -4.9268 -0.0023 12 6 3.1822 -6.0691 -0.0030 13 1 2.5448 -5.9924 -0.8839 14 6 3.9164 -7.4148 -0.0126 15 8 2.9691 -8.4692 0.1732 16 6 2.2834 -8.4258 1.4269 17 6 1.4656 -7.1319 1.5103 18 7 2.3571 -5.9985 1.2134 19 6 2.4181 -4.9118 2.0444 20 1 3.3375 -4.3526 2.1355 21 6 1.2981 -4.5291 2.7697 22 7 1.4256 -3.7159 3.7968 23 14 -0.3898 -5.1681 2.2882 24 1 -0.6524 -6.4503 2.9897 25 1 -1.4235 -4.1733 2.6717 26 1 -0.4354 -5.3885 0.8203 27 7 2.1450 -1.1501 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 3.9811 2.1508 -0.0001 32 1 2.5238 -3.6235 -0.0020 33 1 4.8254 -4.9974 0.8876 34 1 4.8253 -4.9972 -0.8924 35 1 4.4240 -7.5457 -0.9683 36 1 4.6487 -7.4358 0.7945 37 1 1.6162 -9.2840 1.5069 38 1 3.0092 -8.4509 2.2398 39 1 0.6554 -7.1621 0.7817 40 1 1.0533 -7.0222 2.5133 41 1 0.6430 -3.4487 4.3039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051149817.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:04 Heat of formation + Delta-G solvation = 11.186420 kcal Electronic energy + Delta-G solvation = -28337.790158 eV Core-core repulsion = 24280.815611 eV Total energy + Delta-G solvation = -4056.974547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23893 -39.33166 -38.47956 -36.62636 -35.51505 -34.05876 -33.63420 -32.95835 -31.71956 -31.00626 -28.36043 -27.62275 -26.46280 -24.84762 -23.46841 -23.05208 -22.13000 -20.39983 -19.92220 -18.26121 -17.70363 -16.73698 -16.15470 -16.00168 -15.90555 -15.57954 -15.14743 -15.00888 -14.93293 -14.46368 -14.04097 -13.98971 -13.66565 -13.45226 -13.02444 -12.93088 -12.57846 -12.41314 -12.19840 -11.90675 -11.76251 -11.63633 -11.34430 -11.29570 -11.16462 -10.87328 -10.77658 -10.56514 -10.36017 -10.02057 -9.84350 -9.64060 -9.40388 -9.13853 -9.00354 -8.71211 -8.37942 -7.04505 -6.05082 -3.48509 0.43171 0.76414 2.00989 2.98942 3.21728 3.29565 3.39088 3.40713 3.81164 3.83934 3.93256 4.24733 4.41074 4.50111 4.63213 4.69420 4.99947 5.21188 5.33928 5.39000 5.50874 5.58436 5.61231 5.69592 5.76345 5.80009 5.86499 5.88213 5.96390 6.07481 6.17886 6.22359 6.32416 6.47928 6.65585 6.67549 6.93481 7.56775 7.77943 7.84219 8.08522 8.21972 8.60532 8.76426 9.57184 9.93079 11.08946 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.004681 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.373380 B = 5980.772865 C = 7494.501709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.320 3.680 3 N -0.498 5.498 4 C 0.161 3.839 5 C -0.113 4.113 6 Cl -0.007 7.007 7 C 0.161 3.839 8 C 0.558 3.442 9 O -0.526 6.526 10 N -0.666 5.666 11 C 0.134 3.866 12 C 0.127 3.873 13 H 0.047 0.953 14 C 0.055 3.945 15 O -0.388 6.388 16 C 0.046 3.954 17 C 0.091 3.909 18 N -0.606 5.606 19 C -0.268 4.268 20 H 0.095 0.905 21 C 0.035 3.965 22 N -0.900 5.900 23 Si 0.883 3.117 24 H -0.289 1.289 25 H -0.303 1.303 26 H -0.270 1.270 27 N -0.466 5.466 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.181 0.819 32 H 0.422 0.578 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.034 0.966 40 H 0.082 0.918 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 4.581 -9.009 10.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 N -0.213 5.213 4 C -0.007 4.007 5 C -0.145 4.145 6 Cl 0.022 6.978 7 C 0.012 3.988 8 C 0.341 3.659 9 O -0.403 6.403 10 N -0.317 5.317 11 C 0.010 3.990 12 C 0.021 3.979 13 H 0.065 0.935 14 C -0.024 4.024 15 O -0.306 6.306 16 C -0.032 4.032 17 C -0.034 4.034 18 N -0.333 5.333 19 C -0.396 4.396 20 H 0.112 0.888 21 C -0.166 4.166 22 N -0.542 5.542 23 Si 0.714 3.286 24 H -0.217 1.217 25 H -0.231 1.231 26 H -0.195 1.195 27 N -0.183 5.183 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.198 0.802 32 H 0.262 0.738 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.100 0.900 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.673 4.453 -9.005 10.184 hybrid contribution -0.486 -0.017 0.350 0.599 sum 1.187 4.436 -8.655 9.798 Atomic orbital electron populations 1.20632 0.84883 1.04296 1.04651 1.23343 0.98595 0.82798 0.89970 1.68278 1.08908 1.30446 1.13691 1.23317 0.89285 0.97216 0.90914 1.22829 0.89499 0.96052 1.06155 1.98415 1.04650 1.98628 1.96078 1.21738 0.89496 0.94383 0.93196 1.17545 0.86540 0.82867 0.78985 1.90823 1.12125 1.86649 1.50659 1.45814 1.12113 1.04061 1.69709 1.21258 0.94339 0.81630 1.01725 1.21455 0.92627 0.93010 0.90832 0.93518 1.22898 0.90872 0.87461 1.01167 1.87830 1.56155 1.48898 1.37733 1.23072 0.95780 0.98585 0.85768 1.22068 0.93204 0.87563 1.00600 1.44433 1.48192 1.17557 1.23088 1.18942 0.97395 1.04889 1.18361 0.88797 1.25301 0.97480 0.96674 0.97121 1.69803 1.29769 1.36666 1.17932 0.86995 0.85533 0.76866 0.79251 1.21668 1.23113 1.19497 1.68414 1.07488 1.30598 1.11786 0.88925 0.89450 0.89132 0.80190 0.73819 0.90594 0.91564 0.89336 0.92857 0.89748 0.92983 0.94780 0.90022 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 10.31 36.00 0.37 -0.68 16 2 C 0.32 4.96 7.64 -157.31 -1.20 3.76 16 3 N -0.50 -7.18 10.31 -10.70 -0.11 -7.29 16 4 C 0.16 2.13 11.14 -17.14 -0.19 1.94 16 5 C -0.11 -1.76 6.40 -38.78 -0.25 -2.01 16 6 Cl -0.01 -0.10 26.25 -51.86 -1.36 -1.46 16 7 C 0.16 2.92 6.79 -82.61 -0.56 2.36 16 8 C 0.56 10.85 7.82 -12.09 -0.09 10.76 16 9 O -0.53 -10.70 14.14 5.38 0.08 -10.62 16 10 N -0.67 -12.79 3.79 -61.08 -0.23 -13.02 16 11 C 0.13 2.37 4.44 -4.04 -0.02 2.36 16 12 C 0.13 2.30 3.20 -67.42 -0.22 2.08 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 14 C 0.05 0.87 6.29 37.31 0.23 1.11 16 15 O -0.39 -6.77 10.74 -35.23 -0.38 -7.15 16 16 C 0.05 0.80 6.99 37.31 0.26 1.06 16 17 C 0.09 1.85 4.38 -3.49 -0.02 1.84 16 18 N -0.61 -13.07 2.78 -164.24 -0.46 -13.53 16 19 C -0.27 -6.72 7.59 -15.06 -0.11 -6.84 16 20 H 0.09 2.59 5.98 -52.49 -0.31 2.27 16 21 C 0.03 0.92 5.29 -17.43 -0.09 0.83 16 22 N -0.90 -25.91 13.97 55.49 0.78 -25.14 16 23 Si 0.88 20.94 24.28 -169.99 -4.13 16.81 16 24 H -0.29 -6.69 6.54 56.52 0.37 -6.32 16 25 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.27 -6.28 6.65 56.52 0.38 -5.91 16 27 N -0.47 -8.33 9.59 -7.31 -0.07 -8.40 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.42 8.62 6.77 -40.82 -0.28 8.34 16 33 H 0.08 1.48 7.52 -51.93 -0.39 1.09 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.71 6.83 -51.93 -0.35 0.35 16 40 H 0.08 1.80 4.89 -51.93 -0.25 1.54 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -30.65 346.07 -7.57 -38.21 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.01 Total: 7.82 kcal Atomic # 6 Polarization: 20.45 SS G_CDS: -1.89 Total: 18.57 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -0.09 Total: -67.39 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.30 Total: -17.77 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.13 Total: 16.81 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.36 Total: -1.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.65 -7.57 -38.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051149817.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.398 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds