Wall clock time and date at job start Sat Apr 11 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31930 * 119.01836 * 2 1 4 4 C 1.32135 * 121.06078 * 180.02562 * 3 2 1 5 5 C 1.38995 * 119.11999 * 359.73246 * 4 3 2 6 6 Cl 1.73602 * 120.88400 * 180.29369 * 5 4 3 7 7 C 1.39631 * 118.22801 * 0.53097 * 5 4 3 8 8 C 1.48367 * 120.56322 * 179.73911 * 7 5 4 9 9 O 1.21487 * 119.99902 * 359.72669 * 8 7 5 10 10 N 1.34783 * 119.99858 * 179.72335 * 8 7 5 11 11 C 1.46503 * 119.99693 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46719 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.68163 * 59.10850 * 12 11 10 14 14 C 1.53294 * 109.67892 * 179.62377 * 12 11 10 15 15 O 1.42958 * 109.22488 * 172.06232 * 14 12 11 16 16 C 1.42966 * 114.16582 * 297.41877 * 15 14 12 17 17 C 1.53295 * 109.21998 * 62.57883 * 16 15 14 18 18 N 1.47153 * 109.68182 * 298.58605 * 12 11 10 19 19 C 1.36936 * 120.98090 * 9.67706 * 18 12 11 20 20 H 1.08001 * 120.00100 * 329.56554 * 19 18 12 21 21 C 1.38808 * 119.99721 * 149.56447 * 19 18 12 22 22 N 1.31624 * 119.99684 * 163.24215 * 21 19 18 23 23 Si 1.86800 * 120.00351 * 343.24156 * 21 19 18 24 24 H 1.48498 * 109.47287 * 88.92607 * 23 21 19 25 25 H 1.48499 * 109.46950 * 208.92725 * 23 21 19 26 26 H 1.48503 * 109.46819 * 328.92494 * 23 21 19 27 27 N 1.31521 * 119.02147 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46790 * 269.97494 * 1 2 3 29 29 H 1.08999 * 109.47521 * 29.97364 * 1 2 3 30 30 H 1.09004 * 109.47274 * 149.97493 * 1 2 3 31 31 H 1.08000 * 120.44094 * 180.02562 * 4 3 2 32 32 H 0.96993 * 120.00008 * 0.02562 * 10 8 7 33 33 H 1.08995 * 109.47270 * 60.00137 * 11 10 8 34 34 H 1.09005 * 109.46850 * 299.99484 * 11 10 8 35 35 H 1.09002 * 109.51182 * 291.98350 * 14 12 11 36 36 H 1.09002 * 109.51387 * 52.08500 * 14 12 11 37 37 H 1.08999 * 109.51414 * 182.50199 * 16 15 14 38 38 H 1.09004 * 109.51100 * 302.65381 * 16 15 14 39 39 H 1.09000 * 109.68409 * 67.42261 * 17 16 15 40 40 H 1.09004 * 109.68036 * 187.93686 * 17 16 15 41 41 H 0.97005 * 119.99686 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2008 -0.0005 5 6 4.1867 0.0114 0.0046 6 17 5.9227 0.0199 0.0118 7 6 3.4758 -1.1904 -0.0013 8 6 4.1912 -2.4902 -0.0020 9 8 5.4058 -2.5150 -0.0025 10 7 3.4935 -3.6434 -0.0021 11 6 4.2000 -4.9268 -0.0023 12 6 3.1822 -6.0691 -0.0030 13 1 2.5448 -5.9924 -0.8839 14 6 3.9164 -7.4148 -0.0126 15 8 2.9691 -8.4692 0.1732 16 6 2.2834 -8.4258 1.4269 17 6 1.4656 -7.1319 1.5103 18 7 2.3571 -5.9985 1.2134 19 6 2.4181 -4.9118 2.0444 20 1 3.3375 -4.3526 2.1355 21 6 1.2981 -4.5291 2.7697 22 7 1.4256 -3.7159 3.7968 23 14 -0.3898 -5.1681 2.2882 24 1 -0.6524 -6.4503 2.9897 25 1 -1.4235 -4.1733 2.6717 26 1 -0.4354 -5.3885 0.8203 27 7 2.1450 -1.1501 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 3.9811 2.1508 -0.0001 32 1 2.5238 -3.6235 -0.0020 33 1 4.8254 -4.9974 0.8876 34 1 4.8253 -4.9972 -0.8924 35 1 4.4240 -7.5457 -0.9683 36 1 4.6487 -7.4358 0.7945 37 1 1.6162 -9.2840 1.5069 38 1 3.0092 -8.4509 2.2398 39 1 0.6554 -7.1621 0.7817 40 1 1.0533 -7.0222 2.5133 41 1 0.6430 -3.4487 4.3039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051149817.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:04 Heat of formation + Delta-G solvation = -11.181001 kcal Electronic energy + Delta-G solvation = -28338.760082 eV Core-core repulsion = 24280.815611 eV Total energy + Delta-G solvation = -4057.944471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.46316 -40.81034 -39.93889 -37.82966 -37.04337 -35.48425 -35.10157 -34.10911 -33.55200 -32.52361 -29.45186 -29.27918 -27.86430 -26.16120 -25.20486 -24.31268 -23.55329 -21.84079 -21.50958 -19.64029 -19.05448 -18.40640 -17.71254 -17.33251 -17.25342 -16.96892 -16.59713 -16.50388 -16.21012 -16.00465 -15.52537 -15.50091 -15.19774 -14.57186 -14.53566 -14.41943 -14.08756 -13.81053 -13.47771 -13.33241 -13.16795 -12.88728 -12.82951 -12.57501 -12.51110 -12.32280 -12.30561 -12.10083 -12.03681 -11.55040 -11.42980 -11.30860 -11.03982 -10.52006 -10.35013 -10.30681 -9.92980 -8.84467 -8.10175 -5.49172 -0.85077 -0.38812 0.80742 1.31288 1.43729 1.51082 1.59998 1.93472 2.44227 2.52227 2.65220 2.80315 2.88164 3.04992 3.25307 3.28660 3.44982 3.84094 3.91577 4.10908 4.21210 4.28129 4.28533 4.40592 4.48295 4.58192 4.63226 4.68049 4.71635 4.72602 4.76887 4.91951 4.94569 5.18516 5.20199 5.39631 5.50802 5.87128 6.19372 6.21630 6.45609 6.72319 6.86352 7.07839 7.60311 8.00615 9.07654 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.004681 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.373380 B = 5980.772865 C = 7494.501709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.309 3.691 3 N -0.495 5.495 4 C 0.177 3.823 5 C -0.118 4.118 6 Cl -0.002 7.002 7 C 0.133 3.867 8 C 0.553 3.447 9 O -0.542 6.542 10 N -0.671 5.671 11 C 0.138 3.862 12 C 0.127 3.873 13 H 0.056 0.944 14 C 0.058 3.942 15 O -0.389 6.389 16 C 0.054 3.946 17 C 0.085 3.915 18 N -0.619 5.619 19 C -0.235 4.235 20 H 0.063 0.937 21 C -0.018 4.018 22 N -0.950 5.950 23 Si 0.939 3.061 24 H -0.280 1.280 25 H -0.315 1.315 26 H -0.262 1.262 27 N -0.493 5.493 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.225 0.775 32 H 0.416 0.584 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.049 0.951 39 H 0.038 0.962 40 H 0.063 0.937 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 4.188 -10.739 11.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 N -0.209 5.209 4 C 0.008 3.992 5 C -0.151 4.151 6 Cl 0.027 6.973 7 C -0.015 4.015 8 C 0.336 3.664 9 O -0.420 6.420 10 N -0.320 5.320 11 C 0.014 3.986 12 C 0.021 3.979 13 H 0.073 0.927 14 C -0.020 4.020 15 O -0.308 6.308 16 C -0.024 4.024 17 C -0.040 4.040 18 N -0.346 5.346 19 C -0.364 4.364 20 H 0.081 0.919 21 C -0.214 4.214 22 N -0.596 5.596 23 Si 0.769 3.231 24 H -0.207 1.207 25 H -0.244 1.244 26 H -0.186 1.186 27 N -0.211 5.211 28 H 0.109 0.891 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.241 0.759 32 H 0.254 0.746 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.144 0.856 36 H 0.069 0.931 37 H 0.134 0.866 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.455 4.002 -10.775 11.586 hybrid contribution -0.306 0.147 0.843 0.908 sum 1.150 4.149 -9.932 10.825 Atomic orbital electron populations 1.20761 0.82881 1.05793 1.04875 1.23962 0.99926 0.82563 0.89271 1.68410 1.09367 1.29674 1.13491 1.24030 0.88859 0.97962 0.88382 1.22986 0.89806 0.96106 1.06195 1.98413 1.04288 1.98610 1.96035 1.21661 0.90114 0.94499 0.95197 1.17848 0.86555 0.83534 0.78422 1.90790 1.12641 1.87085 1.51469 1.45858 1.11732 1.04699 1.69750 1.21298 0.94213 0.81174 1.01892 1.21653 0.92389 0.94469 0.89359 0.92671 1.22997 0.90270 0.85612 1.03134 1.87843 1.56264 1.49075 1.37572 1.23026 0.95761 0.97798 0.85838 1.22127 0.93649 0.88678 0.99552 1.44559 1.48832 1.17139 1.24084 1.18708 0.95760 1.04713 1.17234 0.91932 1.25792 1.00493 0.97678 0.97443 1.69938 1.30122 1.39656 1.19875 0.86082 0.81569 0.76239 0.79231 1.20687 1.24442 1.18611 1.68386 1.07588 1.32025 1.13071 0.89144 0.86628 0.88983 0.75875 0.74648 0.92956 0.88721 0.85626 0.93113 0.86642 0.93272 0.94462 0.91895 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 10.31 71.24 0.73 -1.26 16 2 C 0.31 9.42 7.64 138.79 1.06 10.48 16 3 N -0.49 -13.46 10.31 -187.76 -1.94 -15.40 16 4 C 0.18 4.33 11.14 84.83 0.95 5.28 16 5 C -0.12 -3.61 6.40 22.79 0.15 -3.47 16 6 Cl 0.00 -0.07 26.25 -2.72 -0.07 -0.14 16 7 C 0.13 4.89 6.79 41.98 0.29 5.17 16 8 C 0.55 21.95 7.82 86.94 0.68 22.63 16 9 O -0.54 -22.35 14.14 -3.67 -0.05 -22.40 16 10 N -0.67 -26.18 3.79 -465.45 -1.76 -27.95 16 11 C 0.14 4.81 4.44 86.38 0.38 5.19 16 12 C 0.13 4.38 3.20 44.97 0.14 4.52 16 13 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 14 C 0.06 1.69 6.29 72.08 0.45 2.15 16 15 O -0.39 -12.33 10.74 -148.98 -1.60 -13.93 16 16 C 0.05 1.72 6.99 72.08 0.50 2.22 16 17 C 0.08 3.32 4.38 86.34 0.38 3.70 16 18 N -0.62 -26.31 2.78 -673.54 -1.88 -28.19 16 19 C -0.24 -12.01 7.59 84.03 0.64 -11.37 16 20 H 0.06 3.59 5.98 -2.91 -0.02 3.57 16 21 C -0.02 -1.00 5.29 84.86 0.45 -0.55 16 22 N -0.95 -56.74 13.97 21.65 0.30 -56.44 16 23 Si 0.94 43.82 24.28 68.60 1.67 45.49 16 24 H -0.28 -12.49 6.54 99.48 0.65 -11.84 16 25 H -0.32 -15.23 7.11 99.48 0.71 -14.52 16 26 H -0.26 -11.66 6.65 99.48 0.66 -11.00 16 27 N -0.49 -17.86 9.59 -177.05 -1.70 -19.56 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.22 3.34 8.06 -2.91 -0.02 3.31 16 32 H 0.42 17.33 6.77 -92.71 -0.63 16.70 16 33 H 0.05 2.08 7.52 -2.39 -0.02 2.06 16 34 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 35 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.05 1.60 8.14 -2.38 -0.02 1.59 16 39 H 0.04 1.45 6.83 -2.39 -0.02 1.44 16 40 H 0.06 2.71 4.89 -2.39 -0.01 2.70 16 41 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -67.83 346.07 0.13 -67.70 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.36 Total: 26.11 kcal Atomic # 6 Polarization: 37.91 SS G_CDS: 6.80 Total: 44.71 kcal Atomic # 7 Polarization: -140.56 SS G_CDS: -6.97 Total: -147.54 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -1.65 Total: -36.33 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.67 Total: 45.49 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -0.07 Total: -0.14 kcal Total: -67.83 0.13 -67.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051149817.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.521 kcal (2) G-P(sol) polarization free energy of solvation -67.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds