Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34229 * 126.28106 * 2 1 4 4 H 0.97006 * 125.73945 * 359.97438 * 3 2 1 5 5 N 1.39935 * 108.52313 * 179.84716 * 3 2 1 6 6 C 1.30526 * 108.89434 * 0.42728 * 5 3 2 7 7 Cl 1.73594 * 126.00798 * 179.76416 * 6 5 3 8 8 C 1.38067 * 126.27814 * 180.31372 * 2 1 3 9 9 C 1.47386 * 126.42735 * 0.02562 * 8 2 1 10 10 O 1.21609 * 120.00220 * 89.99422 * 9 8 2 11 11 N 1.34780 * 119.99522 * 269.99765 * 9 8 2 12 12 C 1.47130 * 121.05599 * 0.02562 * 11 9 8 13 13 C 1.53227 * 108.72494 * 127.77518 * 12 11 9 14 14 O 1.43104 * 109.34937 * 54.12337 * 13 12 11 15 15 C 1.42486 * 113.97725 * 300.04901 * 14 13 12 16 16 C 1.53472 * 113.76521 * 286.78918 * 15 14 13 17 17 N 1.47669 * 85.97030 * 268.72188 * 16 15 14 18 18 C 1.36934 * 134.45807 * 155.75012 * 17 16 15 19 19 H 1.07998 * 120.00389 * 179.97438 * 18 17 16 20 20 C 1.38819 * 119.99892 * 359.94433 * 18 17 16 21 21 N 1.31617 * 119.99771 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 119.99947 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47632 * 90.00293 * 22 20 18 24 24 H 1.48510 * 109.46971 * 210.00348 * 22 20 18 25 25 H 1.48500 * 109.47344 * 329.99498 * 22 20 18 26 26 C 1.47677 * 91.09027 * 335.70720 * 17 16 15 27 27 C 1.47343 * 121.05200 * 179.71798 * 11 9 8 28 28 H 1.09002 * 109.47152 * 269.68607 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68707 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68688 * 1 2 3 31 31 H 1.08998 * 109.59413 * 247.54071 * 12 11 9 32 32 H 1.08994 * 109.59486 * 7.99921 * 12 11 9 33 33 H 1.08997 * 109.48973 * 174.08994 * 13 12 11 34 34 H 1.09005 * 109.48867 * 294.13458 * 13 12 11 35 35 H 1.09000 * 113.79277 * 22.98372 * 16 15 14 36 36 H 1.08995 * 113.78965 * 154.45623 * 16 15 14 37 37 H 0.96994 * 120.00039 * 180.02562 * 21 20 18 38 38 H 1.08998 * 113.79441 * 270.03179 * 26 17 16 39 39 H 1.08996 * 113.89839 * 138.56809 * 26 17 16 40 40 H 1.08994 * 109.74546 * 348.03257 * 27 11 9 41 41 H 1.08991 * 109.74234 * 108.75879 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 -0.0004 5 7 3.6340 0.6553 0.0035 6 6 3.6599 -0.6497 -0.0036 7 17 5.0842 -1.6422 -0.0085 8 6 2.3240 -1.1130 -0.0061 9 6 1.8858 -2.5202 -0.0143 10 8 1.7053 -3.0947 -1.0709 11 7 1.6851 -3.1703 1.1492 12 6 1.8959 -2.4976 2.4406 13 6 0.6399 -2.6773 3.2996 14 8 0.3267 -4.0703 3.3960 15 6 0.0739 -4.6952 2.1406 16 6 -1.2763 -4.3120 1.5198 17 7 -1.8181 -5.4890 2.2281 18 6 -3.0605 -5.8509 2.6759 19 1 -3.1987 -6.7956 3.1806 20 6 -4.1424 -5.0030 2.4818 21 7 -3.9740 -3.8515 1.8669 22 14 -5.8371 -5.4963 3.0933 23 1 -6.0227 -5.0095 4.4839 24 1 -6.8740 -4.8958 2.2161 25 1 -5.9620 -6.9758 3.0659 26 6 -0.4833 -6.1200 2.2591 27 6 1.2413 -4.5751 1.1681 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 2.7524 -2.9411 2.9483 32 1 2.0763 -1.4356 2.2744 33 1 0.8205 -2.2753 4.2965 34 1 -0.1943 -2.1476 2.8395 35 1 -1.6718 -3.3620 1.8793 36 1 -1.3022 -4.4018 0.4339 37 1 -4.7299 -3.2589 1.7316 38 1 -0.2734 -6.7476 1.3930 39 1 -0.2470 -6.6072 3.2050 40 1 0.9199 -4.8732 0.1702 41 1 2.0590 -5.2152 1.4990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053282213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = 64.805214 kcal Electronic energy + Delta-G solvation = -28487.533645 eV Core-core repulsion = 24432.884184 eV Total energy + Delta-G solvation = -4054.649462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.84127 -40.14349 -38.43820 -37.06343 -36.18523 -34.36894 -32.94651 -32.31048 -31.56448 -29.93833 -28.25185 -27.44100 -25.98298 -25.07703 -23.29373 -22.79369 -22.21987 -21.25681 -19.20145 -18.73257 -17.92421 -16.83453 -16.80765 -16.21461 -15.62523 -15.50834 -15.38125 -15.08582 -14.79548 -14.31970 -14.14770 -13.82854 -13.71175 -13.35082 -13.28455 -13.08707 -12.67306 -12.50259 -12.34154 -12.19146 -11.98345 -11.94667 -11.33742 -11.13997 -11.00399 -10.87188 -10.82016 -10.63812 -10.24428 -10.05803 -9.74609 -9.71136 -9.56589 -9.23422 -8.95965 -8.82455 -8.22127 -6.87317 -5.75759 -3.07025 1.19471 1.25501 1.91555 2.57165 2.60574 3.12254 3.40111 3.44926 3.46434 4.06392 4.23986 4.44907 4.50491 4.65324 4.87990 4.94539 5.08565 5.14784 5.24593 5.26842 5.33947 5.43125 5.49263 5.50668 5.62270 5.73770 5.79152 5.84561 5.99047 6.10107 6.31208 6.47062 6.50874 6.59262 6.66980 6.97984 7.00986 7.18232 7.45157 7.50073 7.82242 7.98295 8.24302 9.05060 9.71632 10.58313 11.41578 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018540 B = 0.003448 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.852816 B = 8118.560501 C = 8832.171177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.149 3.851 3 N -0.448 5.448 4 H 0.449 0.551 5 N -0.278 5.278 6 C 0.160 3.840 7 Cl 0.019 6.981 8 C -0.266 4.266 9 C 0.600 3.400 10 O -0.527 6.527 11 N -0.597 5.597 12 C 0.078 3.922 13 C 0.049 3.951 14 O -0.340 6.340 15 C 0.049 3.951 16 C 0.152 3.848 17 N -0.603 5.603 18 C -0.216 4.216 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.136 3.864 27 C 0.100 3.900 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.252 0.748 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.937 10.597 -1.260 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.017 3.983 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.104 5.104 6 C -0.033 4.033 7 Cl 0.047 6.953 8 C -0.281 4.281 9 C 0.386 3.614 10 O -0.403 6.403 11 N -0.331 5.331 12 C -0.045 4.045 13 C -0.029 4.029 14 O -0.258 6.258 15 C 0.007 3.993 16 C 0.026 3.974 17 N -0.329 5.329 18 C -0.344 4.344 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.010 3.990 27 C -0.023 4.023 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.321 11.147 -1.599 19.015 hybrid contribution -1.297 -0.229 0.051 1.318 sum 14.025 10.918 -1.548 17.841 Atomic orbital electron populations 1.20717 0.85070 1.05490 1.05055 1.21528 0.95082 0.85781 0.95929 1.45847 1.02935 1.08697 1.58254 0.70505 1.77132 0.96671 1.10615 1.25963 1.22521 0.88653 0.90474 1.01654 1.98419 1.35274 1.64856 1.96749 1.19732 0.91088 0.94557 1.22734 1.17093 0.76771 0.84184 0.83383 1.90798 1.51084 1.67913 1.30462 1.48047 1.66523 1.13063 1.05422 1.22379 0.99443 0.98329 0.84386 1.22854 0.95219 0.84724 1.00110 1.87936 1.89533 1.20863 1.27482 1.23598 0.93656 0.97351 0.84670 1.22684 0.86102 0.94222 0.94363 1.45771 1.03138 1.18371 1.65631 1.19005 0.82928 1.02418 1.30050 0.90151 1.24736 0.97820 0.96856 1.00976 1.69807 1.29909 1.10450 1.46913 0.86121 0.83887 0.77728 0.78029 1.21599 1.21725 1.20683 1.22492 0.85854 0.91249 0.99440 1.22207 0.97192 0.80702 1.02213 0.88505 0.88236 0.89825 0.90597 0.89660 0.88269 0.92220 0.90626 0.94859 0.93816 0.93167 0.92583 0.87856 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.25 36.01 0.37 -0.57 16 2 C 0.15 1.56 7.18 -81.61 -0.59 0.97 16 3 N -0.45 -3.94 7.28 33.86 0.25 -3.70 16 4 H 0.45 2.21 8.96 -182.72 -1.64 0.57 16 5 N -0.28 -3.26 12.64 33.18 0.42 -2.84 16 6 C 0.16 2.04 7.89 -16.90 -0.13 1.91 16 7 Cl 0.02 0.23 29.19 -51.86 -1.51 -1.28 16 8 C -0.27 -3.52 3.92 -105.03 -0.41 -3.93 16 9 C 0.60 9.45 7.07 -12.54 -0.09 9.36 16 10 O -0.53 -10.12 16.60 5.27 0.09 -10.03 16 11 N -0.60 -8.84 3.03 -174.01 -0.53 -9.37 16 12 C 0.08 0.96 6.50 -3.58 -0.02 0.94 16 13 C 0.05 0.70 6.88 37.27 0.26 0.95 16 14 O -0.34 -6.32 10.52 -35.23 -0.37 -6.69 16 15 C 0.05 0.92 1.21 -90.54 -0.11 0.81 16 16 C 0.15 3.53 6.64 -3.16 -0.02 3.51 16 17 N -0.60 -15.44 3.70 -180.30 -0.67 -16.11 16 18 C -0.22 -6.07 10.70 -15.06 -0.16 -6.23 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -26.87 11.39 55.49 0.63 -26.24 16 22 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.14 2.78 8.33 -3.17 -0.03 2.75 16 27 C 0.10 1.60 5.74 -3.88 -0.02 1.58 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 1.14 7.96 -51.93 -0.41 0.72 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.93 6.32 -51.93 -0.33 0.60 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.92 7.20 -51.93 -0.37 0.55 16 35 H 0.08 1.93 6.31 -51.93 -0.33 1.60 16 36 H 0.03 0.81 7.92 -51.93 -0.41 0.40 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.10 1.79 6.88 -51.93 -0.36 1.43 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -35.00 357.68 -8.73 -43.73 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.35 Total: -1.62 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -1.05 Total: 11.74 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.10 Total: -58.25 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.28 Total: -16.72 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.51 Total: -1.28 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.00 -8.73 -43.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053282213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.536 kcal (2) G-P(sol) polarization free energy of solvation -34.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds