Wall clock time and date at job start Sat Apr 11 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47216 * 135.97666 * 359.35780 * 9 7 2 11 11 C 1.52975 * 87.69390 * 153.61143 * 10 9 7 12 12 C 1.47219 * 135.97128 * 179.72306 * 9 7 2 13 13 C 1.53659 * 115.11420 * 140.89583 * 11 10 9 14 14 C 1.55486 * 101.96938 * 111.47751 * 13 11 10 15 15 H 1.08994 * 111.10791 * 151.42831 * 14 13 11 16 16 N 1.46496 * 111.14268 * 275.53297 * 14 13 11 17 17 C 1.34775 * 119.99973 * 198.13018 * 16 14 13 18 18 O 1.21283 * 119.99992 * 359.97438 * 17 16 14 19 19 C 1.50701 * 120.00085 * 179.97438 * 17 16 14 20 20 N 1.46494 * 109.47192 * 180.02562 * 19 17 16 21 21 C 1.35042 * 126.03875 * 125.00769 * 20 19 17 22 22 C 1.35370 * 107.73386 * 179.97438 * 21 20 19 23 23 Cl 1.73599 * 126.05050 * 179.97438 * 22 21 20 24 24 C 1.39933 * 107.90492 * 359.97438 * 22 21 20 25 25 N 1.30859 * 108.21079 * 359.75998 * 24 22 21 26 26 C 1.55021 * 101.04062 * 33.48918 * 14 13 11 27 27 O 1.42391 * 116.32340 * 269.47484 * 11 10 9 28 28 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 29 29 H 1.09003 * 113.49350 * 268.29470 * 10 9 7 30 30 H 1.08998 * 113.49476 * 38.83045 * 10 9 7 31 31 H 1.08999 * 113.49850 * 321.16223 * 12 9 7 32 32 H 1.08994 * 113.49651 * 91.64129 * 12 9 7 33 33 H 1.09006 * 110.93065 * 229.64766 * 13 11 10 34 34 H 1.08997 * 110.93072 * 353.30649 * 13 11 10 35 35 H 0.97000 * 120.00140 * 18.12732 * 16 14 13 36 36 H 1.09003 * 109.47320 * 300.00856 * 19 17 16 37 37 H 1.09002 * 109.46768 * 60.00357 * 19 17 16 38 38 H 1.08002 * 126.13541 * 359.93874 * 21 20 19 39 39 H 1.07997 * 125.89675 * 179.97438 * 24 22 21 40 40 H 1.09000 * 110.29717 * 205.04797 * 26 14 13 41 41 H 1.08999 * 110.30468 * 82.90213 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.0898 -2.7932 -0.0023 11 6 0.3423 -4.0868 -0.6950 12 6 1.6822 -3.8163 -0.0143 13 6 -0.3882 -5.3540 -0.2245 14 6 -1.2323 -5.7235 -1.4770 15 1 -1.4102 -6.7976 -1.5275 16 7 -2.4950 -4.9811 -1.5010 17 6 -3.5122 -5.4064 -2.2761 18 8 -3.3820 -6.4036 -2.9541 19 6 -4.8113 -4.6431 -2.3004 20 7 -5.7487 -5.3033 -3.2122 21 6 -6.9941 -5.7242 -2.9035 22 6 -7.5298 -6.2785 -4.0163 23 17 -9.1152 -6.9729 -4.1501 24 6 -6.5794 -6.1928 -5.0398 25 7 -5.5139 -5.6036 -4.5602 26 6 -0.2902 -5.2595 -2.6173 27 8 0.3472 -4.0694 -2.1188 28 1 -0.4850 0.8401 0.0004 29 1 -0.4939 -2.9498 0.9979 30 1 -0.7253 -2.1588 -0.6202 31 1 2.5430 -4.0459 -0.6424 32 1 1.7598 -4.2501 0.9826 33 1 0.3211 -6.1464 0.0146 34 1 -1.0313 -5.1386 0.6288 35 1 -2.5990 -4.1834 -0.9590 36 1 -5.2370 -4.6183 -1.2973 37 1 -4.6278 -3.6245 -2.6424 38 1 -7.4762 -5.6352 -1.9411 39 1 -6.7049 -6.5481 -6.0519 40 1 -0.8659 -5.0327 -3.5146 41 1 0.4543 -6.0270 -2.8286 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053943418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:30 Heat of formation + Delta-G solvation = 73.557776 kcal Electronic energy + Delta-G solvation = -26901.449445 eV Core-core repulsion = 22847.179523 eV Total energy + Delta-G solvation = -4054.269922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.59103 -40.42519 -39.13350 -36.67089 -36.36527 -34.37342 -33.61178 -32.17530 -30.84689 -30.23970 -28.45148 -27.41956 -25.75785 -24.83525 -22.76185 -21.92531 -21.48907 -21.13078 -20.53026 -19.10903 -17.88302 -17.55310 -16.87052 -16.48089 -15.93558 -15.42071 -15.13131 -14.95914 -14.74011 -14.58105 -14.26978 -14.11208 -13.65566 -13.56742 -13.36798 -13.26945 -13.00172 -12.66964 -12.13892 -11.98256 -11.67635 -11.60629 -11.50648 -11.45512 -11.14712 -10.86927 -10.73557 -10.54065 -10.41870 -10.21362 -9.87183 -9.67615 -9.55422 -9.26715 -8.87665 -8.69584 -8.63502 -6.92327 -5.80184 -3.10906 1.41015 1.62457 2.33507 2.38145 2.46335 2.94241 3.38193 3.42895 3.44222 4.08529 4.19016 4.32600 4.40080 4.44108 4.52964 4.68524 4.76134 4.94783 4.98726 5.16950 5.17916 5.30532 5.32187 5.40021 5.52351 5.74218 5.82092 5.86019 5.96872 6.09152 6.29904 6.34250 6.43025 6.48899 6.54819 6.83089 7.10805 7.27777 7.29588 7.46365 7.73431 7.94725 7.97716 9.00775 9.67652 10.59177 11.38025 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018612 B = 0.002247 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.045230 B =12455.581231 C =13380.931376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.153 3.847 11 C 0.053 3.947 12 C 0.110 3.890 13 C -0.143 4.143 14 C 0.115 3.885 15 H 0.103 0.897 16 N -0.709 5.709 17 C 0.503 3.497 18 O -0.515 6.515 19 C 0.114 3.886 20 N -0.352 5.352 21 C 0.073 3.927 22 C -0.186 4.186 23 Cl -0.046 7.046 24 C 0.058 3.942 25 N -0.248 5.248 26 C 0.039 3.961 27 O -0.334 6.334 28 H 0.253 0.747 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.409 0.591 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.184 0.816 39 H 0.191 0.809 40 H 0.084 0.916 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.239 -14.202 -2.577 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.340 4.340 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.027 3.973 11 C 0.011 3.989 12 C -0.017 4.017 13 C -0.182 4.182 14 C 0.009 3.991 15 H 0.121 0.879 16 N -0.362 5.362 17 C 0.286 3.714 18 O -0.389 6.389 19 C -0.011 4.011 20 N -0.134 5.134 21 C -0.074 4.074 22 C -0.225 4.225 23 Cl -0.018 7.018 24 C -0.130 4.130 25 N -0.068 5.068 26 C -0.039 4.039 27 O -0.252 6.252 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.244 0.756 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.201 0.799 39 H 0.208 0.792 40 H 0.102 0.898 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.830 -13.940 -3.351 19.920 hybrid contribution -0.609 0.807 0.707 1.234 sum -14.439 -13.133 -2.644 19.696 Atomic orbital electron populations 1.69800 1.05020 1.25252 1.56855 1.24762 0.95739 0.97490 1.02494 0.86091 0.78552 0.83271 0.77673 1.21489 1.21648 1.20683 1.18909 0.90126 0.81316 1.43643 0.90108 1.45376 1.02312 0.99149 1.85828 1.22423 0.89774 0.89352 0.95792 1.23503 0.98375 0.95125 0.81848 1.22711 0.95277 0.87174 0.96527 1.23232 0.98850 0.98902 0.97256 1.22574 0.83269 0.97072 0.96138 0.87894 1.45804 1.13021 1.30869 1.46530 1.20387 0.85132 0.85610 0.80224 1.90792 1.82156 1.25340 1.40640 1.21607 0.88220 0.97351 0.93920 1.47827 1.10759 1.46170 1.08646 1.22207 0.86468 0.98785 0.99964 1.20731 0.91366 1.14439 0.95923 1.98323 1.22043 1.83310 1.98139 1.23933 0.89742 0.99128 1.00199 1.77685 1.21331 1.18449 0.89346 1.23842 0.94321 0.88698 0.97013 1.88472 1.78878 1.39558 1.18287 0.93748 0.94809 0.90489 0.93552 0.93925 0.89001 0.89203 0.75570 0.85134 0.85773 0.79909 0.79249 0.89813 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 11.51 55.49 0.64 -26.08 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.21 -5.98 10.74 -15.06 -0.16 -6.14 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.31 3.78 -184.57 -0.70 -16.01 16 10 C 0.15 3.33 6.89 -7.92 -0.05 3.28 16 11 C 0.05 0.93 1.75 -90.45 -0.16 0.78 16 12 C 0.11 2.20 8.20 -8.06 -0.07 2.14 16 13 C -0.14 -1.77 5.97 -25.07 -0.15 -1.92 16 14 C 0.11 1.40 3.37 -65.54 -0.22 1.18 16 15 H 0.10 1.20 7.74 -51.93 -0.40 0.80 16 16 N -0.71 -7.89 5.24 -51.50 -0.27 -8.16 16 17 C 0.50 5.91 7.86 -10.99 -0.09 5.82 16 18 O -0.51 -8.11 15.47 5.55 0.09 -8.03 16 19 C 0.11 0.95 6.99 -5.20 -0.04 0.92 16 20 N -0.35 -3.77 3.40 -62.51 -0.21 -3.99 16 21 C 0.07 0.64 11.43 -17.16 -0.20 0.45 16 22 C -0.19 -1.83 6.65 -39.97 -0.27 -2.10 16 23 Cl -0.05 -0.40 29.30 -51.86 -1.52 -1.92 16 24 C 0.06 0.63 12.02 -17.33 -0.21 0.42 16 25 N -0.25 -3.29 11.66 30.64 0.36 -2.94 16 26 C 0.04 0.58 7.49 38.23 0.29 0.87 16 27 O -0.33 -6.44 11.18 -35.23 -0.39 -6.83 16 28 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.03 0.71 7.95 -51.93 -0.41 0.30 16 30 H 0.08 1.90 7.13 -51.93 -0.37 1.53 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.09 0.98 8.13 -51.93 -0.42 0.56 16 34 H 0.09 0.99 7.81 -51.93 -0.41 0.59 16 35 H 0.41 4.10 8.62 -40.82 -0.35 3.75 16 36 H 0.13 0.54 8.07 -51.93 -0.42 0.12 16 37 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.19 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -36.71 365.67 -8.23 -44.94 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.29 Total: 1.11 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.41 Total: 5.34 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.19 Total: -57.18 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.31 Total: -14.86 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.52 Total: -1.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.71 -8.23 -44.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053943418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.494 kcal (2) G-P(sol) polarization free energy of solvation -36.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds