Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47216 * 135.97666 * 359.35780 * 9 7 2 11 11 C 1.52975 * 87.69390 * 153.61143 * 10 9 7 12 12 C 1.47219 * 135.97128 * 179.72306 * 9 7 2 13 13 C 1.53659 * 115.11420 * 140.89583 * 11 10 9 14 14 C 1.55486 * 101.96938 * 111.47751 * 13 11 10 15 15 H 1.08994 * 111.10791 * 151.42831 * 14 13 11 16 16 N 1.46496 * 111.14268 * 275.53297 * 14 13 11 17 17 C 1.34775 * 119.99973 * 198.13018 * 16 14 13 18 18 O 1.21283 * 119.99992 * 359.97438 * 17 16 14 19 19 C 1.50701 * 120.00085 * 179.97438 * 17 16 14 20 20 N 1.46494 * 109.47192 * 180.02562 * 19 17 16 21 21 C 1.35042 * 126.03875 * 125.00769 * 20 19 17 22 22 C 1.35370 * 107.73386 * 179.97438 * 21 20 19 23 23 Cl 1.73599 * 126.05050 * 179.97438 * 22 21 20 24 24 C 1.39933 * 107.90492 * 359.97438 * 22 21 20 25 25 N 1.30859 * 108.21079 * 359.75998 * 24 22 21 26 26 C 1.55021 * 101.04062 * 33.48918 * 14 13 11 27 27 O 1.42391 * 116.32340 * 269.47484 * 11 10 9 28 28 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 29 29 H 1.09003 * 113.49350 * 268.29470 * 10 9 7 30 30 H 1.08998 * 113.49476 * 38.83045 * 10 9 7 31 31 H 1.08999 * 113.49850 * 321.16223 * 12 9 7 32 32 H 1.08994 * 113.49651 * 91.64129 * 12 9 7 33 33 H 1.09006 * 110.93065 * 229.64766 * 13 11 10 34 34 H 1.08997 * 110.93072 * 353.30649 * 13 11 10 35 35 H 0.97000 * 120.00140 * 18.12732 * 16 14 13 36 36 H 1.09003 * 109.47320 * 300.00856 * 19 17 16 37 37 H 1.09002 * 109.46768 * 60.00357 * 19 17 16 38 38 H 1.08002 * 126.13541 * 359.93874 * 21 20 19 39 39 H 1.07997 * 125.89675 * 179.97438 * 24 22 21 40 40 H 1.09000 * 110.29717 * 205.04797 * 26 14 13 41 41 H 1.08999 * 110.30468 * 82.90213 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.0898 -2.7932 -0.0023 11 6 0.3423 -4.0868 -0.6950 12 6 1.6822 -3.8163 -0.0143 13 6 -0.3882 -5.3540 -0.2245 14 6 -1.2323 -5.7235 -1.4770 15 1 -1.4102 -6.7976 -1.5275 16 7 -2.4950 -4.9811 -1.5010 17 6 -3.5122 -5.4064 -2.2761 18 8 -3.3820 -6.4036 -2.9541 19 6 -4.8113 -4.6431 -2.3004 20 7 -5.7487 -5.3033 -3.2122 21 6 -6.9941 -5.7242 -2.9035 22 6 -7.5298 -6.2785 -4.0163 23 17 -9.1152 -6.9729 -4.1501 24 6 -6.5794 -6.1928 -5.0398 25 7 -5.5139 -5.6036 -4.5602 26 6 -0.2902 -5.2595 -2.6173 27 8 0.3472 -4.0694 -2.1188 28 1 -0.4850 0.8401 0.0004 29 1 -0.4939 -2.9498 0.9979 30 1 -0.7253 -2.1588 -0.6202 31 1 2.5430 -4.0459 -0.6424 32 1 1.7598 -4.2501 0.9826 33 1 0.3211 -6.1464 0.0146 34 1 -1.0313 -5.1386 0.6288 35 1 -2.5990 -4.1834 -0.9590 36 1 -5.2370 -4.6183 -1.2973 37 1 -4.6278 -3.6245 -2.6424 38 1 -7.4762 -5.6352 -1.9411 39 1 -6.7049 -6.5481 -6.0519 40 1 -0.8659 -5.0327 -3.5146 41 1 0.4543 -6.0270 -2.8286 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053943418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = 46.092716 kcal Electronic energy + Delta-G solvation = -26902.640419 eV Core-core repulsion = 22847.179523 eV Total energy + Delta-G solvation = -4055.460896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.34252 -41.64510 -40.26489 -37.88783 -37.33867 -35.49153 -34.37665 -34.16823 -31.93831 -31.02260 -30.00910 -28.29271 -27.33016 -26.49022 -24.02861 -23.28468 -22.22426 -22.08959 -21.43306 -20.57025 -18.79574 -18.61997 -18.36799 -17.61955 -17.03639 -16.72210 -16.53344 -16.04235 -15.92416 -15.66877 -15.41353 -15.15430 -15.00873 -14.74682 -14.60921 -14.30093 -14.20835 -13.67377 -13.42998 -13.15631 -13.00894 -12.84293 -12.71292 -12.62451 -12.54700 -12.33933 -12.25824 -11.94333 -11.55863 -11.46724 -11.35631 -11.19219 -10.92796 -10.49539 -10.41950 -9.97943 -9.41676 -8.89755 -7.90171 -5.20738 0.70340 0.95357 1.44545 1.45895 1.47054 1.54622 1.62759 1.75769 2.11779 2.47172 2.80858 3.29124 3.35319 3.54479 3.62781 3.65628 3.67012 3.78540 3.86266 4.03957 4.05961 4.16521 4.35394 4.51665 4.62889 4.66816 4.68714 4.75423 4.77512 4.92407 4.92941 5.02685 5.18152 5.29515 5.35126 5.41227 5.52542 5.77574 5.95951 6.34883 6.43313 6.53788 6.93614 7.09966 7.61110 8.61878 9.27474 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018612 B = 0.002247 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.045230 B =12455.581231 C =13380.931376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.976 3.024 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.642 5.642 10 C 0.153 3.847 11 C 0.074 3.926 12 C 0.106 3.894 13 C -0.126 4.126 14 C 0.124 3.876 15 H 0.117 0.883 16 N -0.705 5.705 17 C 0.503 3.497 18 O -0.558 6.558 19 C 0.112 3.888 20 N -0.359 5.359 21 C 0.085 3.915 22 C -0.203 4.203 23 Cl -0.039 7.039 24 C 0.052 3.948 25 N -0.302 5.302 26 C 0.035 3.965 27 O -0.372 6.372 28 H 0.248 0.752 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.415 0.585 36 H 0.180 0.820 37 H 0.133 0.867 38 H 0.223 0.777 39 H 0.204 0.796 40 H 0.068 0.932 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.026 -15.317 -1.033 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.367 5.367 10 C 0.027 3.973 11 C 0.033 3.967 12 C -0.019 4.019 13 C -0.164 4.164 14 C 0.018 3.982 15 H 0.135 0.865 16 N -0.358 5.358 17 C 0.288 3.712 18 O -0.435 6.435 19 C -0.012 4.012 20 N -0.141 5.141 21 C -0.062 4.062 22 C -0.241 4.241 23 Cl -0.011 7.011 24 C -0.135 4.135 25 N -0.122 5.122 26 C -0.042 4.042 27 O -0.291 6.291 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.252 0.748 36 H 0.197 0.803 37 H 0.150 0.850 38 H 0.240 0.760 39 H 0.220 0.780 40 H 0.087 0.913 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.608 -15.077 -1.796 21.070 hybrid contribution -0.353 1.106 0.182 1.175 sum -14.961 -13.970 -1.613 20.533 Atomic orbital electron populations 1.69963 1.06111 1.25460 1.58124 1.25558 0.96722 1.00535 1.03120 0.85112 0.77778 0.79335 0.77298 1.21793 1.21602 1.19468 1.19241 0.90513 0.83060 1.42766 0.90409 1.45780 1.04319 1.00440 1.86207 1.22449 0.87788 0.90870 0.96191 1.23138 0.96772 0.95590 0.81204 1.22964 0.96387 0.84510 0.98077 1.23195 0.99047 0.96569 0.97619 1.22487 0.83168 0.97779 0.94730 0.86500 1.45817 1.12656 1.30896 1.46416 1.20943 0.86061 0.85081 0.79076 1.90775 1.83047 1.27426 1.42294 1.21904 0.86640 0.96628 0.96024 1.48013 1.11658 1.46363 1.08106 1.22849 0.85587 0.96747 1.01065 1.20885 0.91752 1.15319 0.96178 1.98321 1.21382 1.83251 1.98156 1.24276 0.89629 0.98440 1.01201 1.77608 1.22914 1.20445 0.91245 1.23995 0.95171 0.87714 0.97341 1.88436 1.79413 1.41934 1.19344 0.94287 0.93668 0.94172 0.94209 0.90985 0.86145 0.87036 0.74845 0.80290 0.84974 0.76041 0.77954 0.91346 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.00 11.51 21.65 0.25 -55.75 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.23 -12.97 10.74 84.04 0.90 -12.07 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.64 -32.79 3.78 -738.92 -2.80 -35.58 16 10 C 0.15 6.64 6.89 83.48 0.58 7.21 16 11 C 0.07 2.52 1.75 -10.68 -0.02 2.50 16 12 C 0.11 4.12 8.20 83.39 0.68 4.80 16 13 C -0.13 -2.68 5.97 31.67 0.19 -2.49 16 14 C 0.12 2.73 3.37 46.54 0.16 2.89 16 15 H 0.12 2.38 7.74 -2.39 -0.02 2.36 16 16 N -0.71 -14.38 5.24 -435.25 -2.28 -16.66 16 17 C 0.50 11.08 7.86 87.66 0.69 11.77 16 18 O -0.56 -17.22 15.47 -3.04 -0.05 -17.27 16 19 C 0.11 1.63 6.99 85.63 0.60 2.23 16 20 N -0.36 -7.16 3.40 -351.68 -1.19 -8.36 16 21 C 0.08 1.30 11.43 83.54 0.95 2.25 16 22 C -0.20 -3.74 6.65 22.02 0.15 -3.59 16 23 Cl -0.04 -0.63 29.30 -2.72 -0.08 -0.71 16 24 C 0.05 1.12 12.02 85.25 1.02 2.15 16 25 N -0.30 -8.00 11.66 -56.97 -0.66 -8.67 16 26 C 0.04 1.01 7.49 72.67 0.54 1.55 16 27 O -0.37 -14.29 11.18 -148.98 -1.67 -15.95 16 28 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 29 H 0.05 1.85 7.95 -2.39 -0.02 1.83 16 30 H 0.04 2.02 7.13 -2.39 -0.02 2.01 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 2.41 8.13 -2.39 -0.02 2.39 16 33 H 0.12 1.99 8.13 -2.38 -0.02 1.97 16 34 H 0.11 1.97 7.81 -2.39 -0.02 1.96 16 35 H 0.41 7.54 8.62 -92.71 -0.80 6.74 16 36 H 0.18 0.75 8.07 -2.39 -0.02 0.73 16 37 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.22 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.20 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -83.05 365.67 0.73 -82.31 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.27 Total: 12.74 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.91 Total: 15.89 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -6.69 Total: -125.02 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.71 Total: -33.22 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -83.05 0.73 -82.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053943418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.405 kcal (2) G-P(sol) polarization free energy of solvation -83.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds