Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00477 * 2 1 4 4 H 1.48494 * 109.47199 * 85.01472 * 3 2 1 5 5 H 1.48494 * 109.47283 * 205.02280 * 3 2 1 6 6 H 1.48503 * 109.46714 * 325.01696 * 3 2 1 7 7 C 1.38815 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99442 * 186.41624 * 7 2 1 9 9 N 1.36927 * 120.00379 * 6.41318 * 7 2 1 10 10 C 1.47220 * 135.96543 * 6.11719 * 9 7 2 11 11 C 1.52917 * 87.68598 * 153.67039 * 10 9 7 12 12 C 1.47226 * 135.97019 * 186.48545 * 9 7 2 13 13 C 1.53333 * 115.72625 * 270.12523 * 11 10 9 14 14 C 1.55029 * 103.78308 * 229.63730 * 13 11 10 15 15 H 1.08999 * 110.86353 * 262.68982 * 14 13 11 16 16 N 1.46497 * 110.86910 * 139.21981 * 14 13 11 17 17 C 1.34784 * 119.99647 * 154.99556 * 16 14 13 18 18 O 1.21282 * 120.00089 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99484 * 179.97438 * 17 16 14 20 20 N 1.46503 * 109.46595 * 179.97438 * 19 17 16 21 21 C 1.35053 * 126.03534 * 124.71663 * 20 19 17 22 22 C 1.35370 * 107.72545 * 179.83808 * 21 20 19 23 23 Cl 1.73605 * 126.04382 * 180.15806 * 22 21 20 24 24 C 1.39926 * 107.91144 * 0.42448 * 22 21 20 25 25 N 1.30851 * 108.21083 * 359.73527 * 24 22 21 26 26 C 1.55056 * 102.13362 * 20.85131 * 14 13 11 27 27 O 1.42834 * 115.82269 * 141.74403 * 11 10 9 28 28 H 0.96996 * 119.99426 * 0.02562 * 1 2 3 29 29 H 1.08998 * 113.49939 * 268.34781 * 10 9 7 30 30 H 1.09002 * 113.50289 * 38.89317 * 10 9 7 31 31 H 1.09005 * 113.49713 * 321.10452 * 12 9 7 32 32 H 1.08993 * 113.50318 * 91.58303 * 12 9 7 33 33 H 1.09004 * 110.55634 * 348.20961 * 13 11 10 34 34 H 1.09002 * 110.56452 * 111.05611 * 13 11 10 35 35 H 0.96997 * 120.00269 * 335.00284 * 16 14 13 36 36 H 1.09002 * 109.47175 * 299.99824 * 19 17 16 37 37 H 1.08997 * 109.47010 * 60.00331 * 19 17 16 38 38 H 1.07997 * 126.13376 * 359.97438 * 21 20 19 39 39 H 1.07999 * 125.89759 * 179.71986 * 24 22 21 40 40 H 1.09001 * 110.58601 * 82.02839 * 26 14 13 41 41 H 1.09002 * 110.58703 * 204.93915 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.3925 2.1072 1.3947 5 1 3.5965 1.4119 -0.5922 6 1 1.5044 2.6199 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0852 -1.2051 0.1051 9 7 1.3319 -2.3844 -0.1314 10 6 -0.0602 -2.7818 -0.3988 11 6 0.4892 -4.0826 -0.9857 12 6 1.6742 -3.8146 -0.0615 13 6 0.8015 -4.0559 -2.4867 14 6 0.1009 -5.3267 -3.0323 15 1 0.8081 -6.1512 -3.1229 16 7 -0.5469 -5.0542 -4.3177 17 6 -0.7638 -6.0591 -5.1894 18 8 -0.4231 -7.1889 -4.9094 19 6 -1.4308 -5.7789 -6.5114 20 7 -1.5501 -7.0254 -7.2719 21 6 -2.6914 -7.5424 -7.7760 22 6 -2.3763 -8.6959 -8.4105 23 17 -3.4878 -9.7462 -9.2324 24 6 -0.9973 -8.8951 -8.2817 25 7 -0.5016 -7.8945 -7.5996 26 6 -0.9497 -5.6185 -1.9299 27 8 -0.2687 -5.2604 -0.7055 28 1 -0.4849 0.8401 -0.0004 29 1 -0.6515 -2.9285 0.5050 30 1 -0.5596 -2.1490 -1.1325 31 1 2.6383 -4.0532 -0.5106 32 1 1.5554 -4.2418 0.9342 33 1 0.3848 -3.1608 -2.9484 34 1 1.8771 -4.1094 -2.6549 35 1 -0.8197 -4.1507 -4.5415 36 1 -2.4231 -5.3630 -6.3368 37 1 -0.8317 -5.0649 -7.0764 38 1 -3.6780 -7.1116 -7.6902 39 1 -0.4386 -9.7306 -8.6768 40 1 -1.8354 -4.9991 -2.0710 41 1 -1.2166 -6.6753 -1.9250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053943419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = 70.367953 kcal Electronic energy + Delta-G solvation = -26506.801458 eV Core-core repulsion = 22452.393215 eV Total energy + Delta-G solvation = -4054.408243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.68324 -40.38822 -39.30145 -36.73976 -36.46209 -34.69112 -33.72918 -32.19376 -30.76371 -30.25169 -28.35924 -27.47087 -25.86514 -24.83814 -22.72303 -22.13921 -21.58481 -21.26488 -20.70409 -18.92012 -17.98256 -17.73960 -16.81997 -16.38687 -16.04003 -15.47376 -15.20474 -15.08627 -14.88462 -14.73377 -14.53248 -14.00482 -13.88154 -13.66055 -13.44305 -13.00445 -12.91006 -12.62905 -12.37615 -12.04932 -11.71669 -11.69999 -11.53621 -11.09518 -11.01006 -10.87281 -10.80964 -10.71411 -10.56000 -10.38545 -10.15088 -9.78375 -9.60558 -9.26192 -8.87670 -8.80467 -8.78010 -7.00260 -5.88674 -3.20194 1.30499 1.54241 2.22914 2.29402 2.38161 2.80257 3.32260 3.37785 3.39672 4.04469 4.16186 4.23422 4.31367 4.43913 4.54268 4.60667 4.69255 4.90165 5.04879 5.08201 5.23645 5.26059 5.26849 5.28258 5.48070 5.79438 5.81352 5.97658 6.00278 6.17157 6.26540 6.33371 6.39477 6.53041 6.55542 6.87787 7.05583 7.16152 7.19408 7.37307 7.51851 7.85191 7.87134 8.92926 9.59063 10.52268 11.30077 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025194 B = 0.001943 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.094268 B =14409.253175 C =14870.868490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.217 4.217 8 H 0.084 0.916 9 N -0.602 5.602 10 C 0.157 3.843 11 C 0.044 3.956 12 C 0.126 3.874 13 C -0.114 4.114 14 C 0.111 3.889 15 H 0.105 0.895 16 N -0.713 5.713 17 C 0.499 3.501 18 O -0.509 6.509 19 C 0.116 3.884 20 N -0.354 5.354 21 C 0.073 3.927 22 C -0.185 4.185 23 Cl -0.045 7.045 24 C 0.059 3.941 25 N -0.250 5.250 26 C 0.042 3.958 27 O -0.358 6.358 28 H 0.254 0.746 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.405 0.595 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.184 0.816 39 H 0.191 0.809 40 H 0.062 0.938 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.600 -13.616 -18.199 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.204 1.204 6 H -0.216 1.216 7 C -0.344 4.344 8 H 0.101 0.899 9 N -0.329 5.329 10 C 0.031 3.969 11 C 0.003 3.997 12 C -0.001 4.001 13 C -0.152 4.152 14 C 0.006 3.994 15 H 0.123 0.877 16 N -0.367 5.367 17 C 0.283 3.717 18 O -0.382 6.382 19 C -0.009 4.009 20 N -0.137 5.137 21 C -0.074 4.074 22 C -0.223 4.223 23 Cl -0.017 7.017 24 C -0.129 4.129 25 N -0.069 5.069 26 C -0.037 4.037 27 O -0.274 6.274 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.240 0.760 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.201 0.799 39 H 0.208 0.792 40 H 0.080 0.920 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.331 -13.620 -17.245 22.869 hybrid contribution -0.708 1.086 -0.432 1.367 sum -7.039 -12.534 -17.677 22.784 Atomic orbital electron populations 1.69862 1.05061 1.25517 1.56077 1.24847 0.95706 0.97701 1.02137 0.86075 0.78690 0.83221 0.77629 1.21518 1.20444 1.21567 1.18916 0.90410 0.81089 1.43999 0.89862 1.45414 1.05414 0.99167 1.82942 1.22386 0.88807 0.88410 0.97347 1.23824 0.95306 0.86784 0.93778 1.22439 0.94439 0.86736 0.96436 1.22591 1.01865 0.96411 0.94317 1.22734 0.95164 0.99566 0.81957 0.87660 1.45862 1.61920 1.11150 1.17777 1.20449 0.80098 0.85794 0.85383 1.90816 1.49440 1.21394 1.76577 1.21585 1.04896 0.83400 0.91057 1.47828 1.05092 1.18800 1.41944 1.22219 0.92598 0.94918 0.97651 1.20743 0.91927 0.97652 1.12014 1.98329 1.61138 1.64752 1.77431 1.23942 0.92259 0.98603 0.98058 1.77664 1.10829 1.01805 1.16644 1.23818 0.94876 1.00891 0.84070 1.88798 1.63089 1.44338 1.31222 0.93559 0.94511 0.92037 0.93530 0.94001 0.89481 0.89614 0.75968 0.85131 0.86077 0.79867 0.79184 0.92024 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.42 11.82 55.49 0.66 -25.76 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.38 29.56 -169.99 -5.02 16.35 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.22 -5.90 10.73 -15.06 -0.16 -6.06 16 8 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 9 N -0.60 -15.04 3.73 -184.62 -0.69 -15.73 16 10 C 0.16 3.60 6.73 -7.90 -0.05 3.55 16 11 C 0.04 0.82 1.66 -90.67 -0.15 0.67 16 12 C 0.13 2.62 8.20 -8.04 -0.07 2.55 16 13 C -0.11 -1.71 6.20 -25.49 -0.16 -1.87 16 14 C 0.11 1.42 3.51 -65.77 -0.23 1.19 16 15 H 0.11 1.50 7.54 -51.93 -0.39 1.11 16 16 N -0.71 -6.83 5.20 -51.72 -0.27 -7.09 16 17 C 0.50 5.22 7.86 -10.98 -0.09 5.13 16 18 O -0.51 -7.77 15.35 5.56 0.09 -7.68 16 19 C 0.12 0.75 6.99 -5.19 -0.04 0.71 16 20 N -0.35 -3.34 3.40 -62.50 -0.21 -3.55 16 21 C 0.07 0.57 11.43 -17.16 -0.20 0.38 16 22 C -0.18 -1.66 6.65 -39.97 -0.27 -1.93 16 23 Cl -0.04 -0.36 29.30 -51.86 -1.52 -1.88 16 24 C 0.06 0.59 12.02 -17.34 -0.21 0.38 16 25 N -0.25 -3.01 11.64 30.64 0.36 -2.66 16 26 C 0.04 0.58 7.42 38.24 0.28 0.87 16 27 O -0.36 -6.36 11.32 -35.23 -0.40 -6.76 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.49 7.40 -51.93 -0.38 1.10 16 31 H 0.05 0.90 7.91 -51.93 -0.41 0.48 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.30 7.45 -51.93 -0.39 0.91 16 34 H 0.09 1.30 7.82 -51.93 -0.41 0.89 16 35 H 0.41 2.77 8.41 -40.82 -0.34 2.43 16 36 H 0.13 0.32 8.07 -51.93 -0.42 -0.10 16 37 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -35.64 365.11 -8.19 -43.82 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.25 Total: 0.16 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -1.42 Total: 5.28 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.16 Total: -54.80 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.31 Total: -14.44 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.52 Total: -1.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.64 -8.19 -43.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053943419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.193 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds