Wall clock time and date at job start Sat Apr 11 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38162 * 120.07897 * 2 1 4 4 F 1.35105 * 119.93761 * 359.97438 * 3 2 1 5 5 C 1.38587 * 120.12871 * 179.97438 * 3 2 1 6 6 C 1.38284 * 120.29306 * 0.04776 * 5 3 2 7 7 C 1.38116 * 120.15361 * 359.69050 * 6 5 3 8 8 Cl 1.73601 * 120.06394 * 180.27814 * 7 6 5 9 9 C 1.39566 * 120.08373 * 179.97438 * 2 1 3 10 10 C 1.47782 * 120.14120 * 0.02562 * 9 2 1 11 11 O 1.21557 * 120.00064 * 89.99459 * 10 9 2 12 12 N 1.34776 * 119.99738 * 269.99854 * 10 9 2 13 13 C 1.47422 * 125.64527 * 180.02562 * 12 10 9 14 14 C 1.54917 * 104.83074 * 204.09182 * 13 12 10 15 15 H 1.08998 * 111.00524 * 81.06438 * 14 13 12 16 16 C 1.52994 * 111.00301 * 204.91369 * 14 13 12 17 17 C 1.55158 * 101.57978 * 322.98980 * 14 13 12 18 18 H 1.09003 * 110.71814 * 277.13679 * 17 14 13 19 19 N 1.46496 * 110.71649 * 154.04271 * 17 14 13 20 20 C 1.36939 * 119.99791 * 154.99972 * 19 17 14 21 21 H 1.08001 * 119.99848 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00080 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00122 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99803 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47307 * 90.00397 * 24 22 20 26 26 H 1.48506 * 109.46707 * 210.00124 * 24 22 20 27 27 H 1.48495 * 109.47266 * 330.00139 * 24 22 20 28 28 C 1.47020 * 125.65281 * 359.95850 * 12 10 9 29 29 H 1.09002 * 109.46706 * 270.02513 * 1 2 3 30 30 H 1.08999 * 109.47292 * 30.02187 * 1 2 3 31 31 H 1.08994 * 109.46789 * 150.02603 * 1 2 3 32 32 H 1.07999 * 119.85124 * 180.02562 * 5 3 2 33 33 H 1.07992 * 119.92098 * 179.97438 * 6 5 3 34 34 H 1.08998 * 110.36873 * 85.25268 * 13 12 10 35 35 H 1.09005 * 110.36491 * 322.92676 * 13 12 10 36 36 H 1.09004 * 109.47256 * 58.54476 * 16 14 13 37 37 H 1.08998 * 109.47483 * 178.54488 * 16 14 13 38 38 H 1.08999 * 109.47641 * 298.54675 * 16 14 13 39 39 H 0.97001 * 120.00701 * 335.00045 * 19 17 14 40 40 H 0.96995 * 120.00430 * 179.97438 * 23 22 20 41 41 H 1.09000 * 109.88493 * 59.55540 * 28 12 10 42 42 H 1.09005 * 110.00581 * 298.46850 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1995 1.1956 0.0000 4 9 1.5243 2.3658 -0.0005 5 6 3.5854 1.1968 0.0005 6 6 4.2840 0.0034 0.0001 7 6 3.6038 -1.1987 0.0055 8 17 4.4831 -2.6955 0.0122 9 6 2.2066 -1.2077 0.0005 10 6 1.4728 -2.4904 0.0005 11 8 1.1713 -3.0181 -1.0522 12 7 1.1377 -3.0750 1.1678 13 6 0.4096 -4.3486 1.3129 14 6 -0.2510 -4.2706 2.7120 15 1 -1.1711 -3.6873 2.6776 16 6 -0.5117 -5.6694 3.2741 17 6 0.8425 -3.5364 3.5321 18 1 1.6015 -4.2383 3.8779 19 7 0.2483 -2.8197 4.6632 20 6 1.0025 -2.5463 5.7730 21 1 2.0353 -2.8596 5.8146 22 6 0.4393 -1.8676 6.8450 23 7 1.1644 -1.6044 7.9115 24 14 -1.3471 -1.3266 6.7733 25 1 -2.2125 -2.4023 7.3203 26 1 -1.5230 -0.0918 7.5793 27 1 -1.7260 -1.0554 5.3633 28 6 1.4390 -2.5490 2.5072 29 1 -0.3633 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 4.1221 2.1339 0.0010 33 1 5.3638 0.0113 0.0001 34 1 1.1022 -5.1890 1.2667 35 1 -0.3520 -4.4405 0.5384 36 1 0.4291 -6.2162 3.3386 37 1 -0.9520 -5.5856 4.2676 38 1 -1.1978 -6.2033 2.6165 39 1 -0.6794 -2.5387 4.6260 40 1 0.7710 -1.1299 8.6604 41 1 0.9835 -1.5665 2.6308 42 1 2.5178 -2.4773 2.6457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054815925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:35 Heat of formation + Delta-G solvation = -46.570691 kcal Electronic energy + Delta-G solvation = -27927.579737 eV Core-core repulsion = 23848.180692 eV Total energy + Delta-G solvation = -4079.399045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.17408 -40.57009 -38.95024 -37.54953 -36.69887 -34.27369 -33.31221 -32.54928 -31.15303 -30.77676 -28.01967 -27.59754 -26.49288 -24.23732 -23.46444 -22.12708 -21.41727 -20.27078 -19.71628 -17.81389 -17.63763 -17.33477 -16.58376 -16.51113 -16.08610 -15.88603 -15.26651 -14.68981 -14.33108 -13.99629 -13.79552 -13.65378 -13.55640 -13.35053 -13.27152 -13.09320 -13.01784 -12.64954 -12.45548 -12.35708 -12.19596 -11.80746 -11.75742 -11.50609 -11.34655 -11.20860 -11.16894 -10.87022 -10.70761 -10.43903 -10.12076 -9.98905 -9.69709 -9.28183 -9.08341 -8.79988 -8.52517 -7.45998 -5.89111 -3.27413 0.54567 0.69963 1.80942 2.47328 2.85147 3.12094 3.28349 3.31154 3.37908 3.89997 4.20921 4.33082 4.47421 4.48579 4.76553 4.78707 4.97023 4.97948 5.05840 5.21950 5.36980 5.38533 5.42484 5.47995 5.61742 5.62535 5.65878 5.67951 5.72671 5.77635 5.81934 5.85473 6.01998 6.06784 6.23443 6.29206 6.34781 6.37445 6.43852 6.67919 7.53044 7.84643 8.06914 8.29243 9.05516 9.77663 9.95423 11.28446 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010000 B = 0.004433 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.197602 B = 6314.555609 C = 7329.311395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C 0.103 3.897 4 F -0.129 7.129 5 C -0.124 4.124 6 C -0.088 4.088 7 C -0.014 4.014 8 Cl -0.046 7.046 9 C -0.080 4.080 10 C 0.580 3.420 11 O -0.534 6.534 12 N -0.600 5.600 13 C 0.114 3.886 14 C -0.118 4.118 15 H 0.082 0.918 16 C -0.134 4.134 17 C 0.184 3.816 18 H 0.079 0.921 19 N -0.734 5.734 20 C -0.253 4.253 21 H 0.093 0.907 22 C 0.012 3.988 23 N -0.928 5.928 24 Si 0.882 3.118 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.072 3.928 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.364 0.636 40 H 0.261 0.739 41 H 0.072 0.928 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 1.123 -17.047 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.073 4.073 3 C 0.083 3.917 4 F -0.107 7.107 5 C -0.143 4.143 6 C -0.106 4.106 7 C -0.042 4.042 8 Cl -0.017 7.017 9 C -0.084 4.084 10 C 0.367 3.633 11 O -0.411 6.411 12 N -0.332 5.332 13 C -0.008 4.008 14 C -0.138 4.138 15 H 0.100 0.900 16 C -0.191 4.191 17 C 0.072 3.928 18 H 0.097 0.903 19 N -0.375 5.375 20 C -0.383 4.383 21 H 0.110 0.890 22 C -0.185 4.185 23 N -0.574 5.574 24 Si 0.712 3.288 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.203 1.203 28 C -0.054 4.054 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.197 0.803 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.785 0.801 -17.434 17.673 hybrid contribution -1.103 0.789 0.171 1.367 sum 1.682 1.590 -17.263 17.417 Atomic orbital electron populations 1.20860 0.88969 1.04094 1.03958 1.19821 0.97510 0.90091 0.99923 1.17345 0.89972 0.80905 1.03459 1.91522 1.80249 1.45233 1.93738 1.21196 0.92009 0.99658 1.01400 1.20825 1.01005 0.89303 0.99498 1.20872 0.90722 0.88714 1.03895 1.98407 1.75159 1.31564 1.96577 1.19463 0.91876 0.93827 1.03205 1.17481 0.79110 0.83562 0.83150 1.90803 1.55168 1.64616 1.30554 1.48437 1.55351 1.23426 1.05972 1.22318 0.95469 0.85491 0.97530 1.22703 0.99324 0.98112 0.93657 0.90000 1.21609 1.01649 0.94573 1.01308 1.21208 0.93767 0.91456 0.86350 0.90301 1.42698 1.11318 1.68094 1.15374 1.19065 0.96049 1.31332 0.91843 0.88965 1.24666 0.97452 1.00227 0.96154 1.69691 1.35659 1.45552 1.06529 0.86608 0.86484 0.78456 0.77273 1.20906 1.21642 1.20321 1.23319 1.01079 1.00250 0.80739 0.89535 0.90211 0.90410 0.83262 0.83238 0.91068 0.90602 0.92402 0.91462 0.93022 0.80262 0.92878 0.90982 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.44 36.01 0.34 -1.16 16 2 C -0.07 -0.95 5.92 -104.15 -0.62 -1.57 16 3 C 0.10 1.24 7.23 -39.48 -0.29 0.95 16 4 F -0.13 -1.57 16.47 2.25 0.04 -1.53 16 5 C -0.12 -1.23 10.02 -39.44 -0.39 -1.63 16 6 C -0.09 -0.90 9.82 -39.61 -0.39 -1.29 16 7 C -0.01 -0.19 6.35 -39.07 -0.25 -0.43 16 8 Cl -0.05 -0.60 28.04 -51.86 -1.45 -2.05 16 9 C -0.08 -1.14 4.81 -104.95 -0.51 -1.65 16 10 C 0.58 9.19 4.80 -12.36 -0.06 9.13 16 11 O -0.53 -9.72 17.36 5.32 0.09 -9.63 16 12 N -0.60 -9.03 3.33 -171.66 -0.57 -9.60 16 13 C 0.11 1.54 6.38 -2.53 -0.02 1.53 16 14 C -0.12 -1.64 3.27 -88.47 -0.29 -1.93 16 15 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 16 C -0.13 -1.66 9.29 37.15 0.35 -1.32 16 17 C 0.18 3.14 3.08 -66.10 -0.20 2.94 16 18 H 0.08 1.39 7.96 -51.93 -0.41 0.98 16 19 N -0.73 -15.58 4.96 -51.65 -0.26 -15.84 16 20 C -0.25 -6.58 10.44 -15.06 -0.16 -6.73 16 21 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 22 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 23 N -0.93 -27.76 13.97 55.49 0.78 -26.99 16 24 Si 0.88 20.88 27.73 -169.99 -4.71 16.17 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.13 6.52 56.52 0.37 -5.77 16 28 C 0.07 1.17 6.23 -3.07 -0.02 1.15 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 0.85 7.64 -51.93 -0.40 0.45 16 31 H 0.08 1.00 7.08 -51.93 -0.37 0.64 16 32 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.07 0.90 8.04 -51.93 -0.42 0.49 16 35 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 36 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.36 7.67 5.62 -40.82 -0.23 7.44 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.07 1.25 8.03 -51.93 -0.42 0.84 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -30.66 368.73 -8.75 -39.41 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.62 Total: 6.29 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.59 Total: -1.79 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.05 Total: -52.42 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.71 Total: 16.17 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.45 Total: -2.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.66 -8.75 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054815925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.164 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds