Wall clock time and date at job start Sat Apr 11 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38162 * 120.07897 * 2 1 4 4 F 1.35105 * 119.93761 * 359.97438 * 3 2 1 5 5 C 1.38587 * 120.12871 * 179.97438 * 3 2 1 6 6 C 1.38284 * 120.29306 * 0.04776 * 5 3 2 7 7 C 1.38116 * 120.15361 * 359.69050 * 6 5 3 8 8 Cl 1.73601 * 120.06394 * 180.27814 * 7 6 5 9 9 C 1.39566 * 120.08373 * 179.97438 * 2 1 3 10 10 C 1.47782 * 120.14120 * 0.02562 * 9 2 1 11 11 O 1.21557 * 120.00064 * 89.99459 * 10 9 2 12 12 N 1.34776 * 119.99738 * 269.99854 * 10 9 2 13 13 C 1.47422 * 125.64527 * 180.02562 * 12 10 9 14 14 C 1.54917 * 104.83074 * 204.09182 * 13 12 10 15 15 H 1.08998 * 111.00524 * 81.06438 * 14 13 12 16 16 C 1.52994 * 111.00301 * 204.91369 * 14 13 12 17 17 C 1.55158 * 101.57978 * 322.98980 * 14 13 12 18 18 H 1.09003 * 110.71814 * 277.13679 * 17 14 13 19 19 N 1.46496 * 110.71649 * 154.04271 * 17 14 13 20 20 C 1.36939 * 119.99791 * 154.99972 * 19 17 14 21 21 H 1.08001 * 119.99848 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00080 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00122 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99803 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47307 * 90.00397 * 24 22 20 26 26 H 1.48506 * 109.46707 * 210.00124 * 24 22 20 27 27 H 1.48495 * 109.47266 * 330.00139 * 24 22 20 28 28 C 1.47020 * 125.65281 * 359.95850 * 12 10 9 29 29 H 1.09002 * 109.46706 * 270.02513 * 1 2 3 30 30 H 1.08999 * 109.47292 * 30.02187 * 1 2 3 31 31 H 1.08994 * 109.46789 * 150.02603 * 1 2 3 32 32 H 1.07999 * 119.85124 * 180.02562 * 5 3 2 33 33 H 1.07992 * 119.92098 * 179.97438 * 6 5 3 34 34 H 1.08998 * 110.36873 * 85.25268 * 13 12 10 35 35 H 1.09005 * 110.36491 * 322.92676 * 13 12 10 36 36 H 1.09004 * 109.47256 * 58.54476 * 16 14 13 37 37 H 1.08998 * 109.47483 * 178.54488 * 16 14 13 38 38 H 1.08999 * 109.47641 * 298.54675 * 16 14 13 39 39 H 0.97001 * 120.00701 * 335.00045 * 19 17 14 40 40 H 0.96995 * 120.00430 * 179.97438 * 23 22 20 41 41 H 1.09000 * 109.88493 * 59.55540 * 28 12 10 42 42 H 1.09005 * 110.00581 * 298.46850 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1995 1.1956 0.0000 4 9 1.5243 2.3658 -0.0005 5 6 3.5854 1.1968 0.0005 6 6 4.2840 0.0034 0.0001 7 6 3.6038 -1.1987 0.0055 8 17 4.4831 -2.6955 0.0122 9 6 2.2066 -1.2077 0.0005 10 6 1.4728 -2.4904 0.0005 11 8 1.1713 -3.0181 -1.0522 12 7 1.1377 -3.0750 1.1678 13 6 0.4096 -4.3486 1.3129 14 6 -0.2510 -4.2706 2.7120 15 1 -1.1711 -3.6873 2.6776 16 6 -0.5117 -5.6694 3.2741 17 6 0.8425 -3.5364 3.5321 18 1 1.6015 -4.2383 3.8779 19 7 0.2483 -2.8197 4.6632 20 6 1.0025 -2.5463 5.7730 21 1 2.0353 -2.8596 5.8146 22 6 0.4393 -1.8676 6.8450 23 7 1.1644 -1.6044 7.9115 24 14 -1.3471 -1.3266 6.7733 25 1 -2.2125 -2.4023 7.3203 26 1 -1.5230 -0.0918 7.5793 27 1 -1.7260 -1.0554 5.3633 28 6 1.4390 -2.5490 2.5072 29 1 -0.3633 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 4.1221 2.1339 0.0010 33 1 5.3638 0.0113 0.0001 34 1 1.1022 -5.1890 1.2667 35 1 -0.3520 -4.4405 0.5384 36 1 0.4291 -6.2162 3.3386 37 1 -0.9520 -5.5856 4.2676 38 1 -1.1978 -6.2033 2.6165 39 1 -0.6794 -2.5387 4.6260 40 1 0.7710 -1.1299 8.6604 41 1 0.9835 -1.5665 2.6308 42 1 2.5178 -2.4773 2.6457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054815925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:34 Heat of formation + Delta-G solvation = -63.956692 kcal Electronic energy + Delta-G solvation = -27928.333651 eV Core-core repulsion = 23848.180692 eV Total energy + Delta-G solvation = -4080.152958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.09861 -41.71566 -40.04239 -38.83048 -37.67665 -35.98734 -34.34959 -33.84117 -32.90437 -31.76666 -29.53147 -28.56122 -27.54753 -25.75947 -24.75232 -23.09704 -22.79046 -21.64689 -20.84544 -19.53751 -18.91256 -18.32881 -17.72270 -17.45798 -17.31875 -16.84600 -16.58891 -16.25569 -15.75296 -15.19674 -14.91579 -14.78649 -14.71804 -14.64318 -14.43004 -14.31359 -14.11855 -13.98675 -13.69712 -13.59737 -13.20634 -13.13710 -12.95312 -12.92656 -12.73980 -12.31070 -12.26371 -12.17398 -12.13798 -11.93863 -11.80961 -11.46704 -11.22656 -10.98134 -10.21532 -9.79728 -9.73910 -9.37243 -8.00618 -5.35903 -0.39790 -0.21144 0.84001 1.26053 1.40142 1.42481 1.49306 1.74975 2.14456 2.49426 2.92123 3.16260 3.29166 3.37470 3.54018 3.60435 3.66919 3.79954 3.88958 4.10907 4.17007 4.24668 4.28013 4.38252 4.45580 4.51054 4.58327 4.64131 4.78474 4.82361 4.86001 4.86508 4.86837 4.93723 5.03181 5.09887 5.15313 5.29330 5.47099 5.48190 5.78741 6.22013 6.28332 6.84218 7.07586 7.81031 8.00047 9.20194 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010000 B = 0.004433 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.197602 B = 6314.555609 C = 7329.311395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.086 4.086 3 C 0.094 3.906 4 F -0.130 7.130 5 C -0.109 4.109 6 C -0.080 4.080 7 C -0.027 4.027 8 Cl -0.053 7.053 9 C -0.105 4.105 10 C 0.584 3.416 11 O -0.561 6.561 12 N -0.598 5.598 13 C 0.114 3.886 14 C -0.104 4.104 15 H 0.085 0.915 16 C -0.130 4.130 17 C 0.177 3.823 18 H 0.073 0.927 19 N -0.734 5.734 20 C -0.230 4.230 21 H 0.062 0.938 22 C -0.055 4.055 23 N -0.980 5.980 24 Si 0.946 3.054 25 H -0.278 1.278 26 H -0.301 1.301 27 H -0.251 1.251 28 C 0.088 3.912 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.368 0.632 40 H 0.257 0.743 41 H 0.061 0.939 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 1.545 -18.648 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.088 4.088 3 C 0.074 3.926 4 F -0.109 7.109 5 C -0.128 4.128 6 C -0.098 4.098 7 C -0.055 4.055 8 Cl -0.023 7.023 9 C -0.109 4.109 10 C 0.372 3.628 11 O -0.441 6.441 12 N -0.329 5.329 13 C -0.007 4.007 14 C -0.124 4.124 15 H 0.103 0.897 16 C -0.188 4.188 17 C 0.067 3.933 18 H 0.091 0.909 19 N -0.376 5.376 20 C -0.360 4.360 21 H 0.080 0.920 22 C -0.247 4.247 23 N -0.630 5.630 24 Si 0.774 3.226 25 H -0.204 1.204 26 H -0.228 1.228 27 H -0.176 1.176 28 C -0.038 4.038 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.202 0.798 33 H 0.198 0.802 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.202 0.798 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.319 1.191 -19.095 19.272 hybrid contribution -0.845 0.633 0.595 1.212 sum 1.474 1.824 -18.500 18.648 Atomic orbital electron populations 1.20826 0.88770 1.04233 1.03683 1.19949 0.97940 0.90395 1.00480 1.17517 0.90858 0.80435 1.03786 1.91520 1.80455 1.45110 1.93788 1.21606 0.91196 1.00990 0.98981 1.21213 1.02521 0.88256 0.97826 1.21113 0.90419 0.89450 1.04520 1.98401 1.75084 1.32210 1.96645 1.19447 0.92581 0.93371 1.05492 1.17688 0.78571 0.83872 0.82642 1.90776 1.56400 1.65611 1.31325 1.48428 1.55306 1.23847 1.05354 1.22430 0.95817 0.85171 0.97328 1.22616 0.98135 0.98666 0.92999 0.89697 1.21597 1.02482 0.93744 1.00983 1.21370 0.94905 0.91402 0.85654 0.90944 1.42609 1.11188 1.68559 1.15254 1.19001 0.95038 1.29134 0.92865 0.91991 1.25398 1.01868 1.01434 0.96020 1.69866 1.37804 1.47682 1.07630 0.85546 0.81248 0.77408 0.78374 1.20432 1.22805 1.17580 1.22931 1.00413 0.99317 0.81170 0.89956 0.88834 0.91481 0.79781 0.80153 0.89952 0.89720 0.91963 0.92825 0.90443 0.79816 0.93404 0.92023 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 9.44 71.24 0.67 -2.16 16 2 C -0.09 -2.20 5.92 -19.56 -0.12 -2.32 16 3 C 0.09 2.08 7.23 22.34 0.16 2.24 16 4 F -0.13 -2.92 16.47 44.97 0.74 -2.17 16 5 C -0.11 -1.85 10.02 22.36 0.22 -1.63 16 6 C -0.08 -1.43 9.82 22.25 0.22 -1.21 16 7 C -0.03 -0.67 6.35 22.60 0.14 -0.53 16 8 Cl -0.05 -1.31 28.04 -2.72 -0.08 -1.38 16 9 C -0.11 -2.94 4.81 -20.08 -0.10 -3.03 16 10 C 0.58 18.18 4.80 86.77 0.42 18.60 16 11 O -0.56 -20.23 17.36 -3.89 -0.07 -20.30 16 12 N -0.60 -17.47 3.33 -815.27 -2.71 -20.18 16 13 C 0.11 2.88 6.38 86.86 0.55 3.44 16 14 C -0.10 -2.71 3.27 -9.40 -0.03 -2.74 16 15 H 0.08 2.20 8.01 -2.39 -0.02 2.18 16 16 C -0.13 -2.94 9.29 71.98 0.67 -2.27 16 17 C 0.18 5.90 3.08 46.18 0.14 6.04 16 18 H 0.07 2.53 7.96 -2.39 -0.02 2.51 16 19 N -0.73 -30.60 4.96 -317.34 -1.58 -32.18 16 20 C -0.23 -12.03 10.44 84.03 0.88 -11.15 16 21 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 22 C -0.06 -3.07 5.50 84.86 0.47 -2.60 16 23 N -0.98 -60.15 13.97 21.65 0.30 -59.85 16 24 Si 0.95 42.98 27.73 68.60 1.90 44.88 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.25 -10.18 6.52 99.48 0.65 -9.53 16 28 C 0.09 2.79 6.23 86.73 0.54 3.33 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.09 1.90 7.64 -2.39 -0.02 1.88 16 31 H 0.07 1.72 7.08 -2.39 -0.02 1.70 16 32 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 33 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.08 1.92 8.04 -2.39 -0.02 1.90 16 35 H 0.08 2.05 8.04 -2.38 -0.02 2.03 16 36 H 0.06 1.35 8.11 -2.39 -0.02 1.33 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.37 14.84 5.62 -92.71 -0.52 14.31 16 40 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.06 2.12 8.03 -2.39 -0.02 2.10 16 42 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -67.31 368.73 3.83 -63.48 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.47 Total: 23.70 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 4.84 Total: 4.00 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -3.98 Total: -112.20 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.07 Total: -20.30 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.74 Total: -2.17 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.90 Total: 44.88 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.38 kcal Total: -67.31 3.83 -63.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054815925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.477 kcal (2) G-P(sol) polarization free energy of solvation -67.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds