Wall clock time and date at job start Sat Apr 11 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38161 * 120.08622 * 2 1 4 4 F 1.35103 * 119.93555 * 0.03567 * 3 2 1 5 5 C 1.38578 * 120.13160 * 180.25693 * 3 2 1 6 6 C 1.38288 * 120.29150 * 359.78220 * 5 3 2 7 7 C 1.38111 * 120.15961 * 359.95977 * 6 5 3 8 8 Cl 1.73598 * 120.06575 * 180.02562 * 7 6 5 9 9 C 1.39573 * 120.07912 * 179.76277 * 2 1 3 10 10 C 1.47776 * 120.13953 * 0.02562 * 9 2 1 11 11 O 1.21561 * 120.00241 * 269.99405 * 10 9 2 12 12 N 1.34784 * 119.99800 * 89.72439 * 10 9 2 13 13 C 1.47026 * 125.64491 * 179.97438 * 12 10 9 14 14 C 1.54325 * 107.26658 * 181.02425 * 13 12 10 15 15 H 1.09009 * 110.71856 * 263.82691 * 14 13 12 16 16 C 1.53000 * 110.72118 * 140.73659 * 14 13 12 17 17 C 1.55155 * 102.94360 * 22.19234 * 14 13 12 18 18 H 1.09007 * 111.00169 * 206.38995 * 17 14 13 19 19 N 1.46496 * 111.00632 * 82.57667 * 17 14 13 20 20 C 1.36935 * 119.99990 * 154.99808 * 19 17 14 21 21 H 1.07993 * 120.00464 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99487 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00292 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99729 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47546 * 59.99408 * 24 22 20 26 26 H 1.48500 * 109.47374 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46951 * 299.99709 * 24 22 20 28 28 C 1.47421 * 125.64692 * 359.68922 * 12 10 9 29 29 H 1.09000 * 109.46771 * 270.23601 * 1 2 3 30 30 H 1.08995 * 109.46643 * 30.23233 * 1 2 3 31 31 H 1.08999 * 109.47450 * 150.23826 * 1 2 3 32 32 H 1.08005 * 119.85665 * 179.76402 * 5 3 2 33 33 H 1.07998 * 119.91834 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.87892 * 300.43600 * 13 12 10 35 35 H 1.09001 * 109.88127 * 61.45027 * 13 12 10 36 36 H 1.09000 * 109.47531 * 61.44638 * 16 14 13 37 37 H 1.08993 * 109.47136 * 181.45263 * 16 14 13 38 38 H 1.09003 * 109.46778 * 301.44787 * 16 14 13 39 39 H 0.97007 * 119.99698 * 334.99357 * 19 17 14 40 40 H 0.97003 * 119.99925 * 179.97438 * 23 22 20 41 41 H 1.09001 * 110.36459 * 274.74400 * 28 12 10 42 42 H 1.09000 * 110.37050 * 37.07250 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1955 0.0000 4 9 1.5246 2.3657 0.0007 5 6 3.5854 1.1966 -0.0054 6 6 4.2839 0.0031 -0.0062 7 6 3.6037 -1.1990 -0.0009 8 17 4.4830 -2.6958 -0.0013 9 6 2.2066 -1.2078 0.0050 10 6 1.4726 -2.4903 0.0097 11 8 1.1703 -3.0138 1.0644 12 7 1.1334 -3.0770 -1.1554 13 6 0.4066 -4.3474 -1.2954 14 6 0.2692 -4.6324 -2.8058 15 1 -0.6979 -4.2920 -3.1761 16 6 0.4635 -6.1222 -3.0954 17 6 1.4196 -3.7945 -3.4237 18 1 1.1911 -3.5162 -4.4526 19 7 2.6931 -4.5146 -3.3479 20 6 3.6930 -4.2330 -4.2401 21 1 3.5430 -3.4798 -4.9993 22 6 4.8999 -4.9150 -4.1679 23 7 5.0833 -5.8319 -3.2416 24 14 6.2643 -4.5304 -5.3844 25 1 6.6511 -3.1022 -5.2592 26 1 7.4408 -5.3896 -5.0967 27 1 5.7852 -4.7942 -6.7651 28 6 1.4247 -2.5482 -2.5003 29 1 -0.3633 0.0042 1.0277 30 1 -0.3632 0.8879 -0.5174 31 1 -0.3634 -0.8921 -0.5101 32 1 4.1223 2.1337 -0.0092 33 1 5.3638 0.0109 -0.0108 34 1 0.9673 -5.1499 -0.8162 35 1 -0.5803 -4.2619 -0.8405 36 1 -0.3060 -6.6961 -2.5791 37 1 0.3880 -6.2965 -4.1687 38 1 1.4469 -6.4352 -2.7448 39 1 2.8280 -5.1909 -2.6657 40 1 5.9266 -6.3087 -3.1914 41 1 0.6515 -1.8434 -2.8064 42 1 2.4036 -2.0691 -2.5158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054815927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:40 Heat of formation + Delta-G solvation = -45.586572 kcal Electronic energy + Delta-G solvation = -28383.070117 eV Core-core repulsion = 24303.713746 eV Total energy + Delta-G solvation = -4079.356370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.09984 -40.37325 -38.78806 -37.35747 -36.26331 -33.90053 -33.16024 -32.33009 -30.71351 -30.40210 -27.80835 -27.45695 -26.25865 -24.01548 -23.61496 -22.02203 -21.80249 -19.58510 -19.27171 -17.81531 -17.32398 -17.07769 -16.37952 -16.28207 -15.83624 -15.76276 -15.05733 -14.58936 -14.21152 -13.89665 -13.66913 -13.59161 -13.41717 -13.10963 -13.07105 -12.95593 -12.80256 -12.51109 -12.21244 -12.03965 -11.97425 -11.61964 -11.54641 -11.12766 -11.00523 -10.92614 -10.74726 -10.70738 -10.48014 -10.31699 -10.00247 -9.77663 -9.64435 -9.13340 -9.02698 -8.57940 -8.30149 -7.02864 -5.81830 -3.11226 0.72238 0.85283 2.23692 2.71936 3.05314 3.32720 3.39302 3.44526 3.45620 4.03166 4.37993 4.47337 4.52990 4.64027 4.93351 4.97945 5.14721 5.17492 5.30467 5.37766 5.42357 5.48676 5.53748 5.62959 5.74345 5.78851 5.83809 5.87705 5.91574 5.95571 5.97043 6.15934 6.20616 6.33375 6.35099 6.47240 6.50225 6.57417 6.72988 6.93719 7.64210 7.77759 8.31927 8.35041 9.47626 10.02236 10.37307 11.39675 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.004995 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.090784 B = 5603.809834 C = 6834.993144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C 0.094 3.906 4 F -0.133 7.133 5 C -0.125 4.125 6 C -0.090 4.090 7 C -0.013 4.013 8 Cl -0.017 7.017 9 C -0.079 4.079 10 C 0.581 3.419 11 O -0.536 6.536 12 N -0.589 5.589 13 C 0.116 3.884 14 C -0.114 4.114 15 H 0.079 0.921 16 C -0.132 4.132 17 C 0.174 3.826 18 H 0.075 0.925 19 N -0.704 5.704 20 C -0.245 4.245 21 H 0.070 0.930 22 C -0.003 4.003 23 N -0.925 5.925 24 Si 0.902 3.098 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.066 3.934 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.056 0.944 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.093 11.681 4.785 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C 0.074 3.926 4 F -0.112 7.112 5 C -0.145 4.145 6 C -0.109 4.109 7 C -0.041 4.041 8 Cl 0.013 6.987 9 C -0.083 4.083 10 C 0.368 3.632 11 O -0.414 6.414 12 N -0.320 5.320 13 C -0.006 4.006 14 C -0.134 4.134 15 H 0.097 0.903 16 C -0.189 4.189 17 C 0.061 3.939 18 H 0.093 0.907 19 N -0.344 5.344 20 C -0.376 4.376 21 H 0.088 0.912 22 C -0.200 4.200 23 N -0.573 5.573 24 Si 0.733 3.267 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.060 4.060 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.223 0.777 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.035 11.338 5.267 14.861 hybrid contribution 1.036 0.239 -0.432 1.148 sum -6.999 11.577 4.835 14.366 Atomic orbital electron populations 1.20794 0.89235 1.03790 1.03526 1.19775 0.97251 0.90149 1.00722 1.17284 0.89924 0.80740 1.04645 1.91494 1.80305 1.45416 1.93968 1.21159 0.91991 0.99537 1.01767 1.20880 1.01061 0.89437 0.99541 1.21114 0.91161 0.90063 1.01800 1.98502 1.74615 1.29545 1.96061 1.19500 0.92032 0.93715 1.03079 1.17427 0.79046 0.83605 0.83168 1.90792 1.55268 1.64841 1.30487 1.48246 1.55134 1.22877 1.05789 1.22006 0.95702 0.85800 0.97067 1.22540 0.99533 0.97728 0.93629 0.90287 1.21601 1.02251 0.93423 1.01661 1.21354 0.87156 0.89459 0.95970 0.90742 1.42315 1.10032 1.44278 1.37735 1.19127 0.92735 1.17314 1.08377 0.91239 1.24677 0.97871 0.98792 0.98658 1.69644 1.25309 1.27205 1.35094 0.86369 0.82019 0.77492 0.80866 1.21292 1.21774 1.21280 1.23540 1.00505 0.99557 0.82388 0.90025 0.90384 0.90648 0.83573 0.83359 0.91207 0.92127 0.93789 0.92290 0.90940 0.77702 0.93455 0.92566 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 9.44 36.01 0.34 -1.03 16 2 C -0.08 -1.06 5.92 -104.15 -0.62 -1.68 16 3 C 0.09 1.16 7.23 -39.48 -0.29 0.88 16 4 F -0.13 -1.58 16.47 2.25 0.04 -1.54 16 5 C -0.13 -1.40 10.02 -39.44 -0.39 -1.79 16 6 C -0.09 -1.15 9.81 -39.61 -0.39 -1.54 16 7 C -0.01 -0.22 6.35 -39.07 -0.25 -0.46 16 8 Cl -0.02 -0.31 28.04 -51.86 -1.45 -1.77 16 9 C -0.08 -1.28 4.53 -104.95 -0.47 -1.76 16 10 C 0.58 10.53 4.80 -12.36 -0.06 10.47 16 11 O -0.54 -11.18 17.43 5.31 0.09 -11.09 16 12 N -0.59 -10.00 3.32 -171.52 -0.57 -10.57 16 13 C 0.12 1.86 6.45 -3.06 -0.02 1.84 16 14 C -0.11 -1.69 3.40 -88.79 -0.30 -1.99 16 15 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 16 C -0.13 -2.01 8.81 37.16 0.33 -1.69 16 17 C 0.17 3.05 3.47 -65.67 -0.23 2.82 16 18 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 19 N -0.70 -15.77 4.58 -51.25 -0.23 -16.00 16 20 C -0.24 -6.19 9.96 -15.06 -0.15 -6.34 16 21 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 22 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 23 N -0.93 -26.42 13.06 55.49 0.72 -25.70 16 24 Si 0.90 21.44 29.55 -169.99 -5.02 16.42 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 28 C 0.07 1.09 6.40 -2.42 -0.02 1.07 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.78 7.64 -51.93 -0.40 0.38 16 31 H 0.07 0.93 7.08 -51.93 -0.37 0.56 16 32 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.07 1.24 7.82 -51.93 -0.41 0.84 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.34 6.36 -51.93 -0.33 1.01 16 39 H 0.39 9.55 6.34 -40.82 -0.26 9.29 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -29.90 367.99 -9.00 -38.90 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.51 Total: 7.20 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.61 Total: -1.39 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.08 Total: -52.27 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.45 Total: -1.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.90 -9.00 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054815927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.682 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds