Wall clock time and date at job start Sat Apr 11 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38161 * 120.08622 * 2 1 4 4 F 1.35103 * 119.93555 * 0.03567 * 3 2 1 5 5 C 1.38578 * 120.13160 * 180.25693 * 3 2 1 6 6 C 1.38288 * 120.29150 * 359.78220 * 5 3 2 7 7 C 1.38111 * 120.15961 * 359.95977 * 6 5 3 8 8 Cl 1.73598 * 120.06575 * 180.02562 * 7 6 5 9 9 C 1.39573 * 120.07912 * 179.76277 * 2 1 3 10 10 C 1.47776 * 120.13953 * 0.02562 * 9 2 1 11 11 O 1.21561 * 120.00241 * 269.99405 * 10 9 2 12 12 N 1.34784 * 119.99800 * 89.72439 * 10 9 2 13 13 C 1.47026 * 125.64491 * 179.97438 * 12 10 9 14 14 C 1.54325 * 107.26658 * 181.02425 * 13 12 10 15 15 H 1.09009 * 110.71856 * 263.82691 * 14 13 12 16 16 C 1.53000 * 110.72118 * 140.73659 * 14 13 12 17 17 C 1.55155 * 102.94360 * 22.19234 * 14 13 12 18 18 H 1.09007 * 111.00169 * 206.38995 * 17 14 13 19 19 N 1.46496 * 111.00632 * 82.57667 * 17 14 13 20 20 C 1.36935 * 119.99990 * 154.99808 * 19 17 14 21 21 H 1.07993 * 120.00464 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99487 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00292 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99729 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47546 * 59.99408 * 24 22 20 26 26 H 1.48500 * 109.47374 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46951 * 299.99709 * 24 22 20 28 28 C 1.47421 * 125.64692 * 359.68922 * 12 10 9 29 29 H 1.09000 * 109.46771 * 270.23601 * 1 2 3 30 30 H 1.08995 * 109.46643 * 30.23233 * 1 2 3 31 31 H 1.08999 * 109.47450 * 150.23826 * 1 2 3 32 32 H 1.08005 * 119.85665 * 179.76402 * 5 3 2 33 33 H 1.07998 * 119.91834 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.87892 * 300.43600 * 13 12 10 35 35 H 1.09001 * 109.88127 * 61.45027 * 13 12 10 36 36 H 1.09000 * 109.47531 * 61.44638 * 16 14 13 37 37 H 1.08993 * 109.47136 * 181.45263 * 16 14 13 38 38 H 1.09003 * 109.46778 * 301.44787 * 16 14 13 39 39 H 0.97007 * 119.99698 * 334.99357 * 19 17 14 40 40 H 0.97003 * 119.99925 * 179.97438 * 23 22 20 41 41 H 1.09001 * 110.36459 * 274.74400 * 28 12 10 42 42 H 1.09000 * 110.37050 * 37.07250 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1955 0.0000 4 9 1.5246 2.3657 0.0007 5 6 3.5854 1.1966 -0.0054 6 6 4.2839 0.0031 -0.0062 7 6 3.6037 -1.1990 -0.0009 8 17 4.4830 -2.6958 -0.0013 9 6 2.2066 -1.2078 0.0050 10 6 1.4726 -2.4903 0.0097 11 8 1.1703 -3.0138 1.0644 12 7 1.1334 -3.0770 -1.1554 13 6 0.4066 -4.3474 -1.2954 14 6 0.2692 -4.6324 -2.8058 15 1 -0.6979 -4.2920 -3.1761 16 6 0.4635 -6.1222 -3.0954 17 6 1.4196 -3.7945 -3.4237 18 1 1.1911 -3.5162 -4.4526 19 7 2.6931 -4.5146 -3.3479 20 6 3.6930 -4.2330 -4.2401 21 1 3.5430 -3.4798 -4.9993 22 6 4.8999 -4.9150 -4.1679 23 7 5.0833 -5.8319 -3.2416 24 14 6.2643 -4.5304 -5.3844 25 1 6.6511 -3.1022 -5.2592 26 1 7.4408 -5.3896 -5.0967 27 1 5.7852 -4.7942 -6.7651 28 6 1.4247 -2.5482 -2.5003 29 1 -0.3633 0.0042 1.0277 30 1 -0.3632 0.8879 -0.5174 31 1 -0.3634 -0.8921 -0.5101 32 1 4.1223 2.1337 -0.0092 33 1 5.3638 0.0109 -0.0108 34 1 0.9673 -5.1499 -0.8162 35 1 -0.5803 -4.2619 -0.8405 36 1 -0.3060 -6.6961 -2.5791 37 1 0.3880 -6.2965 -4.1687 38 1 1.4469 -6.4352 -2.7448 39 1 2.8280 -5.1909 -2.6657 40 1 5.9266 -6.3087 -3.1914 41 1 0.6515 -1.8434 -2.8064 42 1 2.4036 -2.0691 -2.5158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054815927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:39 Heat of formation + Delta-G solvation = -62.210909 kcal Electronic energy + Delta-G solvation = -28383.791002 eV Core-core repulsion = 24303.713746 eV Total energy + Delta-G solvation = -4080.077256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.05662 -41.64396 -39.99421 -38.75823 -37.55133 -35.62996 -34.29574 -33.69799 -32.25754 -31.67153 -29.35161 -28.48595 -27.48874 -25.75312 -24.91099 -23.27747 -22.93935 -20.83199 -20.64075 -19.40502 -18.69869 -18.24026 -17.69158 -17.37451 -17.12724 -16.81006 -16.43604 -16.24537 -15.63457 -15.37487 -14.81092 -14.66479 -14.62541 -14.49285 -14.40254 -14.16001 -13.94889 -13.78232 -13.56992 -13.38072 -13.04846 -12.99216 -12.85897 -12.76449 -12.66269 -12.24950 -12.19315 -12.17008 -12.05061 -11.94986 -11.45879 -11.35899 -11.14576 -10.90996 -10.17244 -9.73667 -9.67255 -8.88955 -7.85062 -5.11624 -0.35267 -0.17875 1.00893 1.35307 1.50335 1.50874 1.56489 1.87428 2.19322 2.60953 2.98402 3.27085 3.44223 3.45959 3.62309 3.73433 3.91262 3.92757 3.98236 4.12894 4.21719 4.30726 4.43356 4.53198 4.55008 4.64471 4.68228 4.73886 4.82378 4.86725 4.89777 4.92528 4.97115 5.00091 5.01911 5.21260 5.24787 5.38777 5.52657 5.58913 5.64596 6.34280 6.41755 6.94855 7.43212 8.18320 8.41006 9.37359 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.004995 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.090784 B = 5603.809834 C = 6834.993144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C 0.098 3.902 4 F -0.126 7.126 5 C -0.106 4.106 6 C -0.088 4.088 7 C -0.034 4.034 8 Cl -0.056 7.056 9 C -0.102 4.102 10 C 0.580 3.420 11 O -0.575 6.575 12 N -0.589 5.589 13 C 0.114 3.886 14 C -0.098 4.098 15 H 0.120 0.880 16 C -0.126 4.126 17 C 0.162 3.838 18 H 0.089 0.911 19 N -0.713 5.713 20 C -0.228 4.228 21 H 0.079 0.921 22 C -0.064 4.064 23 N -0.963 5.963 24 Si 0.956 3.044 25 H -0.281 1.281 26 H -0.305 1.305 27 H -0.279 1.279 28 C 0.077 3.923 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.186 0.814 33 H 0.169 0.831 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.373 0.627 40 H 0.245 0.755 41 H 0.093 0.907 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.709 14.677 3.714 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C 0.078 3.922 4 F -0.104 7.104 5 C -0.125 4.125 6 C -0.106 4.106 7 C -0.062 4.062 8 Cl -0.027 7.027 9 C -0.106 4.106 10 C 0.368 3.632 11 O -0.455 6.455 12 N -0.319 5.319 13 C -0.008 4.008 14 C -0.117 4.117 15 H 0.138 0.862 16 C -0.184 4.184 17 C 0.051 3.949 18 H 0.107 0.893 19 N -0.352 5.352 20 C -0.360 4.360 21 H 0.097 0.903 22 C -0.257 4.257 23 N -0.614 5.614 24 Si 0.786 3.214 25 H -0.207 1.207 26 H -0.232 1.232 27 H -0.205 1.205 28 C -0.048 4.048 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.203 0.797 33 H 0.187 0.813 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.206 0.794 40 H 0.054 0.946 41 H 0.111 0.889 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.700 14.384 4.152 17.839 hybrid contribution 1.420 -0.567 -0.085 1.532 sum -8.280 13.817 4.067 16.613 Atomic orbital electron populations 1.20844 0.87954 1.04427 1.03984 1.19959 0.98264 0.89758 1.00208 1.17337 0.90420 0.80479 1.03916 1.91522 1.80262 1.44801 1.93811 1.21541 0.91567 1.00324 0.99044 1.21149 1.02191 0.88667 0.98629 1.21320 0.91189 0.89580 1.04066 1.98486 1.75407 1.32323 1.96467 1.19424 0.92092 0.93605 1.05442 1.17761 0.78515 0.84173 0.82760 1.90754 1.56910 1.66154 1.31732 1.48334 1.54749 1.22982 1.05873 1.22088 0.96064 0.84710 0.97965 1.22520 1.00103 0.96839 0.92256 0.86172 1.21522 1.00801 0.94269 1.01791 1.21668 0.85998 0.90047 0.97205 0.89335 1.42437 1.11373 1.44545 1.36832 1.19503 0.92950 1.15710 1.07806 0.90304 1.25307 1.00153 0.99685 1.00538 1.69809 1.25131 1.29081 1.37336 0.85480 0.79420 0.77044 0.79415 1.20744 1.23235 1.20485 1.23405 1.00571 0.99174 0.81636 0.89681 0.88274 0.91350 0.79667 0.81346 0.94087 0.90057 0.91344 0.92159 0.94892 0.79356 0.94649 0.88892 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 9.44 71.24 0.67 -1.78 16 2 C -0.08 -2.04 5.92 -19.56 -0.12 -2.16 16 3 C 0.10 2.12 7.23 22.33 0.16 2.28 16 4 F -0.13 -2.49 16.47 44.97 0.74 -1.75 16 5 C -0.11 -1.98 10.02 22.36 0.22 -1.76 16 6 C -0.09 -2.06 9.81 22.25 0.22 -1.84 16 7 C -0.03 -1.08 6.35 22.60 0.14 -0.93 16 8 Cl -0.06 -2.18 28.04 -2.72 -0.08 -2.25 16 9 C -0.10 -3.24 4.53 -20.07 -0.09 -3.33 16 10 C 0.58 21.17 4.80 86.76 0.42 21.58 16 11 O -0.57 -24.65 17.43 -3.91 -0.07 -24.72 16 12 N -0.59 -19.71 3.32 -814.84 -2.71 -22.42 16 13 C 0.11 3.55 6.45 86.73 0.56 4.11 16 14 C -0.10 -2.68 3.40 -9.61 -0.03 -2.71 16 15 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 16 C -0.13 -3.75 8.81 71.98 0.63 -3.11 16 17 C 0.16 5.42 3.47 46.45 0.16 5.58 16 18 H 0.09 2.76 8.09 -2.38 -0.02 2.74 16 19 N -0.71 -32.24 4.58 -316.05 -1.45 -33.69 16 20 C -0.23 -11.54 9.96 84.04 0.84 -10.70 16 21 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 22 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 23 N -0.96 -57.13 13.06 21.65 0.28 -56.85 16 24 Si 0.96 44.67 29.55 68.60 2.03 46.69 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.31 -14.83 7.11 99.48 0.71 -14.13 16 27 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 28 C 0.08 2.41 6.40 86.93 0.56 2.97 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 1.64 7.64 -2.39 -0.02 1.63 16 31 H 0.07 1.54 7.08 -2.39 -0.02 1.53 16 32 H 0.19 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 34 H 0.04 1.51 7.82 -2.39 -0.02 1.49 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.03 1.24 6.36 -2.39 -0.02 1.23 16 39 H 0.37 19.11 6.34 -92.70 -0.59 18.53 16 40 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.06 2.03 7.69 -2.39 -0.02 2.01 16 Total: -1.00 -68.07 367.99 4.03 -64.03 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.47 Total: 25.79 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 4.81 Total: 5.17 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -3.87 Total: -112.96 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.07 Total: -24.72 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.74 Total: -1.75 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.08 Total: -2.25 kcal Total: -68.07 4.03 -64.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054815927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.821 kcal (2) G-P(sol) polarization free energy of solvation -68.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds