Wall clock time and date at job start Sat Apr 11 2020 05:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38448 * 119.84147 * 2 1 4 4 C 1.37853 * 120.23002 * 179.70114 * 3 2 1 5 5 C 1.39676 * 119.89989 * 0.55132 * 4 3 2 6 6 C 1.47695 * 120.15884 * 179.71989 * 5 4 3 7 7 O 1.21572 * 120.00324 * 224.12289 * 6 5 4 8 8 N 1.34782 * 119.99809 * 44.40175 * 6 5 4 9 9 C 1.47427 * 125.64499 * 185.02649 * 8 6 5 10 10 C 1.54911 * 104.82532 * 204.09187 * 9 8 6 11 11 H 1.08997 * 111.00951 * 81.06519 * 10 9 8 12 12 C 1.53006 * 111.00063 * 204.87912 * 10 9 8 13 13 C 1.55153 * 101.58320 * 322.98405 * 10 9 8 14 14 H 1.09005 * 110.71780 * 154.04039 * 13 10 9 15 15 N 1.46500 * 110.72574 * 277.14175 * 13 10 9 16 16 C 1.36936 * 120.00095 * 204.99704 * 15 13 10 17 17 H 1.07996 * 119.99899 * 0.02562 * 16 15 13 18 18 C 1.38806 * 119.99933 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99871 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00002 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47275 * 89.99887 * 20 18 16 22 22 H 1.48502 * 109.47293 * 209.99431 * 20 18 16 23 23 H 1.48498 * 109.47282 * 329.99524 * 20 18 16 24 24 C 1.47022 * 125.64558 * 4.71487 * 8 6 5 25 25 C 1.39790 * 119.68121 * 359.45384 * 5 4 3 26 26 F 1.35105 * 120.11846 * 180.29751 * 25 5 4 27 27 C 1.38302 * 119.82790 * 179.97438 * 2 1 3 28 28 Cl 1.73596 * 119.95967 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.46874 * 270.02858 * 1 2 3 30 30 H 1.08999 * 109.46687 * 30.01976 * 1 2 3 31 31 H 1.08995 * 109.47799 * 150.02260 * 1 2 3 32 32 H 1.07995 * 119.88353 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.04904 * 180.30057 * 4 3 2 34 34 H 1.08995 * 110.36394 * 322.92451 * 9 8 6 35 35 H 1.08994 * 110.36856 * 85.14167 * 9 8 6 36 36 H 1.08996 * 109.47299 * 58.54189 * 12 10 9 37 37 H 1.09002 * 109.47072 * 178.54729 * 12 10 9 38 38 H 1.09006 * 109.46595 * 298.54460 * 12 10 9 39 39 H 0.96995 * 119.99749 * 25.00321 * 15 13 10 40 40 H 0.97007 * 119.99663 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.88092 * 298.39186 * 24 8 6 42 42 H 1.08997 * 109.88439 * 59.56125 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2009 0.0000 4 6 3.5744 1.2103 0.0062 5 6 4.2789 0.0042 0.0009 6 6 5.7559 0.0076 0.0012 7 8 6.3657 -0.7434 -0.7350 8 7 6.4276 0.8393 0.8219 9 6 7.8903 1.0213 0.8512 10 6 8.1967 1.5404 2.2783 11 1 8.2313 0.7190 2.9938 12 6 9.5007 2.3404 2.3025 13 6 6.9749 2.4589 2.5446 14 1 6.7821 2.5436 3.6141 15 7 7.1818 3.7821 1.9507 16 6 6.5278 4.8715 2.4612 17 1 5.8598 4.7554 3.3018 18 6 6.7243 6.1252 1.8988 19 7 6.0952 7.1723 2.3891 20 14 7.8802 6.3262 0.4452 21 1 7.1207 6.1521 -0.8190 22 1 8.4843 7.6824 0.4769 23 1 8.9545 5.3039 0.5221 24 6 5.8225 1.7201 1.8317 25 6 3.5794 -1.2061 0.0008 26 9 4.2519 -2.3778 0.0018 27 6 2.1949 -1.1998 0.0005 28 17 1.3214 -2.7000 0.0019 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5134 32 1 1.6515 2.1336 -0.0004 33 1 4.1089 2.1488 0.0111 34 1 8.3943 0.0707 0.6770 35 1 8.1964 1.7545 0.1051 36 1 9.4250 3.1797 1.6113 37 1 9.6786 2.7147 3.3107 38 1 10.3276 1.6964 2.0029 39 1 7.7820 3.8864 1.1959 40 1 6.2328 8.0486 1.9963 41 1 5.1616 2.4394 1.3480 42 1 5.2624 1.1262 2.5539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054926280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:49 Heat of formation + Delta-G solvation = -56.283365 kcal Electronic energy + Delta-G solvation = -27655.716985 eV Core-core repulsion = 23575.896767 eV Total energy + Delta-G solvation = -4079.820218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.21763 -41.61091 -40.17747 -39.06395 -37.66683 -35.84456 -34.44716 -33.59128 -32.58284 -31.68990 -29.75410 -29.07335 -27.13700 -25.54099 -24.20093 -23.98015 -22.95927 -21.00617 -20.90090 -19.80615 -18.71212 -18.24948 -18.12945 -17.34612 -17.06048 -16.90350 -16.26090 -16.00082 -15.95477 -15.59709 -15.40722 -14.88456 -14.71375 -14.62773 -14.58541 -14.27623 -13.73655 -13.60137 -13.46687 -13.27006 -13.23321 -13.09146 -12.96359 -12.88571 -12.64039 -12.57378 -12.25920 -12.13100 -12.06298 -11.90681 -11.58791 -11.46069 -11.24339 -10.97298 -10.03259 -9.93131 -9.73127 -9.31548 -7.97958 -5.30958 -0.50482 -0.23217 0.77373 1.39951 1.40912 1.41388 1.48104 1.79925 2.25833 2.50402 2.76879 3.13179 3.32162 3.49845 3.54242 3.63391 3.70678 3.81354 3.87058 4.00291 4.18639 4.33474 4.39531 4.52455 4.55229 4.61746 4.67186 4.69321 4.78134 4.80439 4.93158 4.95518 4.96178 5.12531 5.14942 5.17997 5.20194 5.27296 5.48386 5.49323 5.84334 6.25646 6.31498 6.85507 7.11279 7.86307 8.04194 9.22809 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.003509 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.264668 B = 7976.969230 C = 9254.299645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.017 4.017 3 C -0.111 4.111 4 C -0.049 4.049 5 C -0.173 4.173 6 C 0.571 3.429 7 O -0.573 6.573 8 N -0.600 5.600 9 C 0.109 3.891 10 C -0.102 4.102 11 H 0.109 0.891 12 C -0.132 4.132 13 C 0.170 3.830 14 H 0.088 0.912 15 N -0.737 5.737 16 C -0.220 4.220 17 H 0.071 0.929 18 C -0.051 4.051 19 N -0.978 5.978 20 Si 0.933 3.067 21 H -0.285 1.285 22 H -0.301 1.301 23 H -0.252 1.252 24 C 0.074 3.926 25 C 0.139 3.861 26 F -0.129 7.129 27 C -0.092 4.092 28 Cl -0.037 7.037 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.178 0.822 33 H 0.149 0.851 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.365 0.635 40 H 0.256 0.744 41 H 0.076 0.924 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.830 -15.995 -2.742 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.018 4.018 3 C -0.129 4.129 4 C -0.067 4.067 5 C -0.177 4.177 6 C 0.360 3.640 7 O -0.454 6.454 8 N -0.331 5.331 9 C -0.013 4.013 10 C -0.122 4.122 11 H 0.127 0.873 12 C -0.189 4.189 13 C 0.060 3.940 14 H 0.106 0.894 15 N -0.380 5.380 16 C -0.351 4.351 17 H 0.089 0.911 18 C -0.243 4.243 19 N -0.629 5.629 20 Si 0.762 3.238 21 H -0.212 1.212 22 H -0.229 1.229 23 H -0.177 1.177 24 C -0.050 4.050 25 C 0.118 3.882 26 F -0.108 7.108 27 C -0.120 4.120 28 Cl -0.008 7.008 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.196 0.804 33 H 0.167 0.833 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.199 0.801 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.714 -16.482 -3.021 18.887 hybrid contribution 0.939 0.213 -1.003 1.390 sum -7.775 -16.268 -4.023 18.474 Atomic orbital electron populations 1.21103 0.86690 1.05300 1.04877 1.20250 0.98953 0.89483 0.93147 1.21426 0.92768 0.99041 0.99650 1.21602 0.95390 0.96286 0.93421 1.19784 0.93006 0.93598 1.11282 1.17903 0.86993 0.79436 0.79681 1.90771 1.70321 1.41585 1.42753 1.48396 1.08571 1.40212 1.35934 1.22395 0.79605 1.01088 0.98205 1.22647 0.95700 0.98512 0.95368 0.87295 1.21573 0.95470 0.99297 1.02605 1.21397 0.92153 0.83585 0.96877 0.89400 1.42790 1.53596 1.03516 1.38078 1.19035 1.18714 0.86098 1.11274 0.91116 1.25251 1.01715 0.95496 1.01845 1.69842 1.48254 0.99433 1.45361 0.85760 0.80321 0.77048 0.80674 1.21179 1.22866 1.17657 1.23294 0.98565 0.92597 0.90578 1.17485 0.88721 0.80744 1.01215 1.91536 1.80545 1.45387 1.93293 1.20818 0.89348 0.90206 1.11642 1.98371 1.74985 1.30510 1.96932 0.88297 0.88055 0.90273 0.80422 0.83337 0.90252 0.92122 0.93910 0.91725 0.90880 0.80084 0.93531 0.90538 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.60 71.24 0.68 -0.61 16 2 C -0.02 -0.30 5.89 -19.80 -0.12 -0.42 16 3 C -0.11 -1.94 9.67 22.23 0.22 -1.73 16 4 C -0.05 -1.14 8.44 22.53 0.19 -0.95 16 5 C -0.17 -4.98 5.40 -20.06 -0.11 -5.09 16 6 C 0.57 19.40 7.23 86.74 0.63 20.03 16 7 O -0.57 -23.30 16.69 -3.94 -0.07 -23.36 16 8 N -0.60 -18.39 3.33 -815.33 -2.71 -21.10 16 9 C 0.11 3.12 6.36 86.86 0.55 3.68 16 10 C -0.10 -2.63 3.51 -9.40 -0.03 -2.67 16 11 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 12 C -0.13 -3.35 8.98 71.98 0.65 -2.70 16 13 C 0.17 5.28 3.40 46.18 0.16 5.44 16 14 H 0.09 2.71 8.09 -2.38 -0.02 2.69 16 15 N -0.74 -29.30 4.25 -317.31 -1.35 -30.65 16 16 C -0.22 -10.96 10.44 84.03 0.88 -10.08 16 17 H 0.07 3.81 8.06 -2.91 -0.02 3.78 16 18 C -0.05 -2.75 5.50 84.86 0.47 -2.28 16 19 N -0.98 -58.35 13.97 21.65 0.30 -58.05 16 20 Si 0.93 42.48 27.74 68.60 1.90 44.38 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.25 -10.31 6.52 99.48 0.65 -9.66 16 24 C 0.07 2.15 5.63 86.73 0.49 2.63 16 25 C 0.14 3.95 7.22 22.70 0.16 4.12 16 26 F -0.13 -4.20 15.95 44.97 0.72 -3.48 16 27 C -0.09 -2.08 6.31 22.33 0.14 -1.94 16 28 Cl -0.04 -0.75 26.93 -2.72 -0.07 -0.82 16 29 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.10 0.69 8.08 -2.39 -0.02 0.67 16 31 H 0.08 0.85 6.88 -2.39 -0.02 0.83 16 32 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.15 3.62 6.08 -2.91 -0.02 3.60 16 34 H 0.08 2.22 7.99 -2.39 -0.02 2.21 16 35 H 0.06 1.83 8.04 -2.39 -0.02 1.81 16 36 H 0.04 1.28 6.27 -2.39 -0.01 1.27 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.36 14.54 4.11 -92.71 -0.38 14.16 16 40 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 41 H 0.08 2.37 5.61 -2.39 -0.01 2.35 16 42 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -67.70 359.45 4.30 -63.40 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.63 Total: 22.26 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 4.95 Total: 7.42 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -3.76 Total: -109.80 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.07 Total: -23.36 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.72 Total: -3.48 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.90 Total: 44.38 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.07 Total: -0.82 kcal Total: -67.70 4.30 -63.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054926280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.120 kcal (2) G-P(sol) polarization free energy of solvation -67.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds