Wall clock time and date at job start Sat Apr 11 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38458 * 119.83624 * 2 1 4 4 C 1.37853 * 120.23101 * 179.69499 * 3 2 1 5 5 C 1.39671 * 119.89898 * 0.58439 * 4 3 2 6 6 C 1.47697 * 120.15651 * 179.69288 * 5 4 3 7 7 O 1.21568 * 120.00217 * 226.79424 * 6 5 4 8 8 N 1.34783 * 120.00091 * 46.79858 * 6 5 4 9 9 C 1.47418 * 125.64723 * 175.17742 * 8 6 5 10 10 C 1.54915 * 104.82717 * 204.08987 * 9 8 6 11 11 H 1.09004 * 111.00341 * 81.06893 * 10 9 8 12 12 C 1.53005 * 111.00106 * 204.91301 * 10 9 8 13 13 C 1.55148 * 101.58585 * 322.98991 * 10 9 8 14 14 H 1.08995 * 110.87474 * 277.07272 * 13 10 9 15 15 N 1.46498 * 110.72204 * 153.86628 * 13 10 9 16 16 C 1.36937 * 119.99929 * 160.02862 * 15 13 10 17 17 H 1.07999 * 119.99905 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99606 * 180.02562 * 16 15 13 19 19 N 1.31611 * 120.00438 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99597 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47003 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46990 * 120.00037 * 20 18 16 23 23 H 1.48505 * 109.46722 * 240.00019 * 20 18 16 24 24 C 1.47022 * 125.64416 * 355.13157 * 8 6 5 25 25 C 1.39794 * 119.68105 * 359.42140 * 5 4 3 26 26 F 1.35100 * 120.11374 * 180.30050 * 25 5 4 27 27 C 1.38296 * 119.84068 * 179.97438 * 2 1 3 28 28 Cl 1.73595 * 119.95114 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.47380 * 270.01959 * 1 2 3 30 30 H 1.09000 * 109.47207 * 30.02017 * 1 2 3 31 31 H 1.09003 * 109.46707 * 150.02081 * 1 2 3 32 32 H 1.07997 * 119.88071 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.04817 * 180.27310 * 4 3 2 34 34 H 1.08999 * 110.36751 * 322.92489 * 9 8 6 35 35 H 1.08997 * 110.36927 * 85.14849 * 9 8 6 36 36 H 1.08998 * 109.46946 * 172.19737 * 12 10 9 37 37 H 1.08997 * 109.47422 * 292.19803 * 12 10 9 38 38 H 1.09001 * 109.46920 * 52.20565 * 12 10 9 39 39 H 0.96994 * 120.00016 * 339.74841 * 15 13 10 40 40 H 0.96997 * 120.00112 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.88135 * 59.56528 * 24 8 6 42 42 H 1.08992 * 109.88543 * 298.39561 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2011 0.0000 4 6 3.5743 1.2106 0.0063 5 6 4.2789 0.0046 0.0004 6 6 5.7558 0.0082 0.0003 7 8 6.3654 -0.7074 -0.7706 8 7 6.4279 0.8048 0.8550 9 6 7.8912 0.8348 1.0313 10 6 8.1069 1.3885 2.4619 11 1 7.9800 0.6039 3.2078 12 6 9.4806 2.0495 2.5927 13 6 6.9715 2.4410 2.5631 14 1 7.2728 3.3827 2.1046 15 7 6.5800 2.6484 3.9595 16 6 5.9135 3.7886 4.3216 17 1 5.6770 4.5350 3.5778 18 6 5.5431 3.9853 5.6449 19 7 5.8318 3.0759 6.5513 20 14 4.6346 5.5411 6.1389 21 1 4.4328 6.3975 4.9427 22 1 3.3157 5.1811 6.7188 23 1 5.4337 6.2815 7.1482 24 6 5.8230 1.7882 1.7652 25 6 3.5794 -1.2058 0.0004 26 9 4.2521 -2.3774 0.0008 27 6 2.1951 -1.1996 0.0005 28 17 1.3217 -2.6998 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6512 2.1337 -0.0004 33 1 4.1086 2.1491 0.0108 34 1 8.3041 -0.1705 0.9473 35 1 8.3486 1.4949 0.2943 36 1 9.5527 2.5495 3.5585 37 1 10.2582 1.2893 2.5183 38 1 9.6095 2.7806 1.7946 39 1 6.7892 1.9763 4.6268 40 1 5.5732 3.2136 7.4760 41 1 5.1353 1.2882 2.4472 42 1 5.2923 2.5475 1.1909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054926281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:52 Heat of formation + Delta-G solvation = -46.825661 kcal Electronic energy + Delta-G solvation = -27420.954623 eV Core-core repulsion = 23341.544522 eV Total energy + Delta-G solvation = -4079.410101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.06209 -40.36479 -39.06019 -37.57813 -36.72317 -34.17741 -33.34673 -32.29639 -30.85174 -30.68043 -28.22256 -27.58425 -26.03299 -24.16595 -23.10777 -22.74611 -21.44003 -20.03935 -19.81152 -17.57349 -17.23195 -17.18556 -17.00552 -16.18014 -15.78299 -15.72106 -14.93225 -14.79016 -14.59425 -14.12024 -14.02431 -13.73973 -13.61772 -13.27862 -13.20557 -12.80065 -12.57467 -12.55352 -12.46673 -12.26854 -12.18278 -11.76990 -11.66486 -11.54837 -11.19873 -11.16444 -11.05563 -10.80447 -10.66953 -10.29357 -10.02650 -9.96552 -9.78543 -9.10059 -9.02490 -8.94056 -8.43895 -7.16402 -5.91396 -3.22704 0.50592 0.74515 1.72084 2.60066 2.97517 3.31636 3.33911 3.39741 3.42331 3.77733 4.25102 4.42740 4.46675 4.56478 4.73554 4.88816 5.04921 5.11706 5.13545 5.18335 5.30334 5.43540 5.51444 5.55759 5.58482 5.68703 5.73617 5.76769 5.84113 5.84954 5.93441 5.97792 6.12829 6.18763 6.28524 6.33492 6.41610 6.46227 6.55377 6.79736 7.56027 7.62063 8.15532 8.25700 9.37905 9.91296 10.26117 11.30465 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.003761 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.165762 B = 7442.586237 C = 9324.079793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.030 4.030 3 C -0.123 4.123 4 C -0.048 4.048 5 C -0.151 4.151 6 C 0.574 3.426 7 O -0.535 6.535 8 N -0.604 5.604 9 C 0.115 3.885 10 C -0.114 4.114 11 H 0.085 0.915 12 C -0.133 4.133 13 C 0.177 3.823 14 H 0.068 0.932 15 N -0.711 5.711 16 C -0.250 4.250 17 H 0.073 0.927 18 C -0.006 4.006 19 N -0.927 5.927 20 Si 0.906 3.094 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.067 3.933 25 C 0.162 3.838 26 F -0.112 7.112 27 C -0.086 4.086 28 Cl -0.045 7.045 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.076 0.924 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.587 -4.934 -13.761 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.031 4.031 3 C -0.141 4.141 4 C -0.066 4.066 5 C -0.155 4.155 6 C 0.361 3.639 7 O -0.413 6.413 8 N -0.336 5.336 9 C -0.007 4.007 10 C -0.133 4.133 11 H 0.103 0.897 12 C -0.191 4.191 13 C 0.065 3.935 14 H 0.086 0.914 15 N -0.351 5.351 16 C -0.381 4.381 17 H 0.091 0.909 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.737 3.263 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.059 4.059 25 C 0.141 3.859 26 F -0.090 7.090 27 C -0.114 4.114 28 Cl -0.016 7.016 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.424 -5.359 -14.158 16.445 hybrid contribution -0.528 0.243 0.672 0.888 sum -6.952 -5.116 -13.486 16.012 Atomic orbital electron populations 1.20965 0.89260 1.03972 1.03733 1.19829 0.97282 0.90473 0.95530 1.21037 0.93687 0.97662 1.01693 1.21478 0.94277 0.97171 0.93701 1.19865 0.94375 0.92623 1.08665 1.17530 0.85922 0.79878 0.80531 1.90801 1.69281 1.41852 1.39382 1.48412 1.08295 1.38287 1.38632 1.22319 0.79856 1.01607 0.96965 1.22635 0.96564 0.98944 0.95206 0.89710 1.21609 0.94697 0.99963 1.02822 1.21254 0.89763 0.95172 0.87308 0.91390 1.42375 1.67924 1.22731 1.02038 1.19265 1.29263 0.96598 0.92944 0.90899 1.24761 1.01287 0.98281 0.95962 1.69662 1.51428 1.34610 1.01753 0.86148 0.79234 0.82637 0.78296 1.20436 1.21772 1.21755 1.23590 0.99856 0.90435 0.91998 1.17218 0.87772 0.81344 0.99610 1.91589 1.79977 1.44549 1.92909 1.20664 0.90088 0.89077 1.11574 1.98371 1.75463 1.30805 1.96967 0.89698 0.90308 0.90468 0.83586 0.83328 0.90776 0.91273 0.91242 0.93091 0.92778 0.77821 0.93329 0.90534 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.60 36.00 0.35 -0.58 16 2 C -0.03 -0.32 5.89 -104.52 -0.62 -0.93 16 3 C -0.12 -1.23 9.67 -39.64 -0.38 -1.62 16 4 C -0.05 -0.58 8.52 -39.19 -0.33 -0.91 16 5 C -0.15 -2.26 5.43 -104.92 -0.57 -2.83 16 6 C 0.57 9.79 7.20 -12.39 -0.09 9.70 16 7 O -0.54 -10.62 16.86 5.31 0.09 -10.53 16 8 N -0.60 -9.59 3.33 -171.69 -0.57 -10.16 16 9 C 0.11 1.67 6.36 -2.53 -0.02 1.66 16 10 C -0.11 -1.72 3.25 -88.47 -0.29 -2.01 16 11 H 0.08 1.38 8.00 -51.93 -0.42 0.97 16 12 C -0.13 -1.78 9.31 37.16 0.35 -1.43 16 13 C 0.18 3.11 3.06 -66.10 -0.20 2.91 16 14 H 0.07 1.18 8.02 -51.93 -0.42 0.77 16 15 N -0.71 -15.95 5.17 -51.66 -0.27 -16.22 16 16 C -0.25 -6.27 9.98 -15.06 -0.15 -6.42 16 17 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 19 N -0.93 -26.34 13.06 55.49 0.72 -25.61 16 20 Si 0.91 20.90 29.55 -169.99 -5.02 15.87 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.07 1.08 5.38 -3.06 -0.02 1.06 16 25 C 0.16 2.44 7.23 -38.93 -0.28 2.16 16 26 F -0.11 -1.88 16.02 2.25 0.04 -1.85 16 27 C -0.09 -1.10 6.31 -39.49 -0.25 -1.35 16 28 Cl -0.05 -0.52 26.93 -51.86 -1.40 -1.92 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.08 0.57 6.88 -51.93 -0.36 0.21 16 32 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.15 1.61 5.87 -52.49 -0.31 1.30 16 34 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 35 H 0.07 0.92 7.99 -51.93 -0.41 0.50 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.39 9.46 7.71 -40.82 -0.31 9.14 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.08 1.39 8.03 -51.93 -0.42 0.98 16 42 H 0.06 0.90 5.95 -51.93 -0.31 0.59 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -30.29 366.25 -8.94 -39.23 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.45 Total: 6.51 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -2.60 Total: -0.84 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.11 Total: -52.00 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.40 Total: -1.92 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.29 -8.94 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054926281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.597 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds