Wall clock time and date at job start Sat Apr 11 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38458 * 119.83624 * 2 1 4 4 C 1.37853 * 120.23101 * 179.69499 * 3 2 1 5 5 C 1.39671 * 119.89898 * 0.58439 * 4 3 2 6 6 C 1.47697 * 120.15651 * 179.69288 * 5 4 3 7 7 O 1.21568 * 120.00217 * 226.79424 * 6 5 4 8 8 N 1.34783 * 120.00091 * 46.79858 * 6 5 4 9 9 C 1.47418 * 125.64723 * 175.17742 * 8 6 5 10 10 C 1.54915 * 104.82717 * 204.08987 * 9 8 6 11 11 H 1.09004 * 111.00341 * 81.06893 * 10 9 8 12 12 C 1.53005 * 111.00106 * 204.91301 * 10 9 8 13 13 C 1.55148 * 101.58585 * 322.98991 * 10 9 8 14 14 H 1.08995 * 110.87474 * 277.07272 * 13 10 9 15 15 N 1.46498 * 110.72204 * 153.86628 * 13 10 9 16 16 C 1.36937 * 119.99929 * 160.02862 * 15 13 10 17 17 H 1.07999 * 119.99905 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99606 * 180.02562 * 16 15 13 19 19 N 1.31611 * 120.00438 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99597 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47003 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46990 * 120.00037 * 20 18 16 23 23 H 1.48505 * 109.46722 * 240.00019 * 20 18 16 24 24 C 1.47022 * 125.64416 * 355.13157 * 8 6 5 25 25 C 1.39794 * 119.68105 * 359.42140 * 5 4 3 26 26 F 1.35100 * 120.11374 * 180.30050 * 25 5 4 27 27 C 1.38296 * 119.84068 * 179.97438 * 2 1 3 28 28 Cl 1.73595 * 119.95114 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.47380 * 270.01959 * 1 2 3 30 30 H 1.09000 * 109.47207 * 30.02017 * 1 2 3 31 31 H 1.09003 * 109.46707 * 150.02081 * 1 2 3 32 32 H 1.07997 * 119.88071 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.04817 * 180.27310 * 4 3 2 34 34 H 1.08999 * 110.36751 * 322.92489 * 9 8 6 35 35 H 1.08997 * 110.36927 * 85.14849 * 9 8 6 36 36 H 1.08998 * 109.46946 * 172.19737 * 12 10 9 37 37 H 1.08997 * 109.47422 * 292.19803 * 12 10 9 38 38 H 1.09001 * 109.46920 * 52.20565 * 12 10 9 39 39 H 0.96994 * 120.00016 * 339.74841 * 15 13 10 40 40 H 0.96997 * 120.00112 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.88135 * 59.56528 * 24 8 6 42 42 H 1.08992 * 109.88543 * 298.39561 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2011 0.0000 4 6 3.5743 1.2106 0.0063 5 6 4.2789 0.0046 0.0004 6 6 5.7558 0.0082 0.0003 7 8 6.3654 -0.7074 -0.7706 8 7 6.4279 0.8048 0.8550 9 6 7.8912 0.8348 1.0313 10 6 8.1069 1.3885 2.4619 11 1 7.9800 0.6039 3.2078 12 6 9.4806 2.0495 2.5927 13 6 6.9715 2.4410 2.5631 14 1 7.2728 3.3827 2.1046 15 7 6.5800 2.6484 3.9595 16 6 5.9135 3.7886 4.3216 17 1 5.6770 4.5350 3.5778 18 6 5.5431 3.9853 5.6449 19 7 5.8318 3.0759 6.5513 20 14 4.6346 5.5411 6.1389 21 1 4.4328 6.3975 4.9427 22 1 3.3157 5.1811 6.7188 23 1 5.4337 6.2815 7.1482 24 6 5.8230 1.7882 1.7652 25 6 3.5794 -1.2058 0.0004 26 9 4.2521 -2.3774 0.0008 27 6 2.1951 -1.1996 0.0005 28 17 1.3217 -2.6998 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6512 2.1337 -0.0004 33 1 4.1086 2.1491 0.0108 34 1 8.3041 -0.1705 0.9473 35 1 8.3486 1.4949 0.2943 36 1 9.5527 2.5495 3.5585 37 1 10.2582 1.2893 2.5183 38 1 9.6095 2.7806 1.7946 39 1 6.7892 1.9763 4.6268 40 1 5.5732 3.2136 7.4760 41 1 5.1353 1.2882 2.4472 42 1 5.2923 2.5475 1.1909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054926281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:51 Heat of formation + Delta-G solvation = -63.868635 kcal Electronic energy + Delta-G solvation = -27421.693662 eV Core-core repulsion = 23341.544522 eV Total energy + Delta-G solvation = -4080.149140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.23069 -41.57070 -40.10978 -38.93888 -37.67053 -35.87495 -34.46141 -33.51279 -32.46824 -31.68710 -29.29208 -28.97491 -27.11696 -25.90426 -24.09009 -23.86813 -22.70785 -21.41159 -21.01025 -19.05291 -18.74338 -18.28159 -18.11961 -17.39653 -17.10583 -16.91908 -16.34985 -16.01951 -15.67669 -15.44908 -15.32071 -14.88794 -14.75302 -14.61596 -14.53629 -14.12521 -13.81879 -13.58925 -13.41898 -13.27452 -12.99982 -12.97381 -12.90982 -12.85621 -12.61589 -12.56394 -12.18196 -12.10959 -12.05222 -12.00113 -11.65532 -11.41482 -11.24502 -10.91273 -10.00990 -9.92672 -9.72257 -9.03690 -7.90680 -5.20770 -0.47338 -0.21771 0.77057 1.39256 1.52942 1.54347 1.63275 1.79165 2.27967 2.59984 2.78217 3.11635 3.41097 3.51864 3.61019 3.72406 3.80591 3.87157 3.89118 4.20093 4.22109 4.33516 4.40079 4.42633 4.58457 4.62529 4.67831 4.68917 4.77475 4.87433 4.90577 4.95300 5.08991 5.12283 5.15140 5.17950 5.19089 5.33404 5.48609 5.50802 5.59843 6.27845 6.31555 6.85416 7.37361 8.08260 8.32138 9.32666 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.003761 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.165762 B = 7442.586237 C = 9324.079793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.023 4.023 3 C -0.110 4.110 4 C -0.049 4.049 5 C -0.175 4.175 6 C 0.572 3.428 7 O -0.571 6.571 8 N -0.602 5.602 9 C 0.116 3.884 10 C -0.105 4.105 11 H 0.067 0.933 12 C -0.127 4.127 13 C 0.172 3.828 14 H 0.079 0.921 15 N -0.722 5.722 16 C -0.236 4.236 17 H 0.087 0.913 18 C -0.070 4.070 19 N -0.970 5.970 20 Si 0.966 3.034 21 H -0.259 1.259 22 H -0.298 1.298 23 H -0.300 1.300 24 C 0.080 3.920 25 C 0.132 3.868 26 F -0.133 7.133 27 C -0.095 4.095 28 Cl -0.040 7.040 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.186 0.814 33 H 0.163 0.837 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.374 0.626 40 H 0.249 0.751 41 H 0.054 0.946 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.038 -2.910 -15.297 17.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.024 4.024 3 C -0.128 4.128 4 C -0.067 4.067 5 C -0.179 4.179 6 C 0.361 3.639 7 O -0.452 6.452 8 N -0.334 5.334 9 C -0.006 4.006 10 C -0.125 4.125 11 H 0.086 0.914 12 C -0.185 4.185 13 C 0.062 3.938 14 H 0.097 0.903 15 N -0.361 5.361 16 C -0.368 4.368 17 H 0.104 0.896 18 C -0.262 4.262 19 N -0.620 5.620 20 Si 0.796 3.204 21 H -0.183 1.183 22 H -0.226 1.226 23 H -0.228 1.228 24 C -0.045 4.045 25 C 0.111 3.889 26 F -0.111 7.111 27 C -0.122 4.122 28 Cl -0.011 7.011 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.203 0.797 33 H 0.180 0.820 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.206 0.794 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.872 -3.317 -15.748 17.915 hybrid contribution -0.095 -0.421 1.071 1.154 sum -7.967 -3.738 -14.677 17.113 Atomic orbital electron populations 1.21093 0.86766 1.05429 1.04635 1.20296 0.98990 0.89680 0.93406 1.21498 0.92911 0.99002 0.99358 1.21699 0.95316 0.96429 0.93239 1.19849 0.93229 0.93827 1.10974 1.17889 0.86942 0.79156 0.79953 1.90768 1.70308 1.43229 1.40901 1.48434 1.08830 1.38024 1.38087 1.22400 0.79372 1.01959 0.96868 1.22543 0.96930 0.97845 0.95165 0.91442 1.21563 0.93972 1.00640 1.02277 1.21456 0.90915 0.96404 0.85038 0.90317 1.42516 1.67935 1.21816 1.03800 1.19689 1.27172 0.96980 0.92937 0.89564 1.25494 1.03285 1.01067 0.96376 1.69819 1.53820 1.36717 1.01647 0.85178 0.77379 0.79690 0.78136 1.18293 1.22559 1.22809 1.23294 0.98788 0.90601 0.91811 1.17562 0.88860 0.80871 1.01647 1.91524 1.80575 1.45642 1.93381 1.20857 0.89388 0.90258 1.11739 1.98367 1.75034 1.30782 1.96952 0.88824 0.87574 0.90398 0.79704 0.82001 0.91078 0.89137 0.93254 0.91187 0.91031 0.79415 0.94208 0.92740 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.60 71.23 0.68 -0.74 16 2 C -0.02 -0.42 5.89 -19.80 -0.12 -0.53 16 3 C -0.11 -1.83 9.67 22.23 0.22 -1.62 16 4 C -0.05 -1.06 8.52 22.52 0.19 -0.87 16 5 C -0.17 -5.17 5.43 -20.06 -0.11 -5.28 16 6 C 0.57 19.57 7.20 86.74 0.62 20.19 16 7 O -0.57 -23.13 16.86 -3.93 -0.07 -23.20 16 8 N -0.60 -18.70 3.33 -815.36 -2.71 -21.41 16 9 C 0.12 3.24 6.36 86.86 0.55 3.79 16 10 C -0.10 -3.09 3.25 -9.40 -0.03 -3.12 16 11 H 0.07 2.23 8.00 -2.39 -0.02 2.21 16 12 C -0.13 -3.19 9.31 71.98 0.67 -2.52 16 13 C 0.17 5.82 3.06 46.18 0.14 5.96 16 14 H 0.08 2.54 8.02 -2.39 -0.02 2.52 16 15 N -0.72 -32.20 5.17 -317.34 -1.64 -33.85 16 16 C -0.24 -11.59 9.98 84.03 0.84 -10.76 16 17 H 0.09 3.94 7.83 -2.91 -0.02 3.92 16 18 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 19 N -0.97 -56.10 13.06 21.65 0.28 -55.81 16 20 Si 0.97 42.58 29.55 68.60 2.03 44.61 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 24 C 0.08 2.49 5.38 86.73 0.47 2.96 16 25 C 0.13 4.02 7.23 22.69 0.16 4.19 16 26 F -0.13 -4.68 16.02 44.97 0.72 -3.96 16 27 C -0.09 -2.33 6.31 22.33 0.14 -2.19 16 28 Cl -0.04 -0.91 26.93 -2.72 -0.07 -0.99 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.11 0.69 8.08 -2.39 -0.02 0.67 16 31 H 0.08 0.92 6.88 -2.39 -0.02 0.91 16 32 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.16 3.01 5.87 -2.91 -0.02 2.99 16 34 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 35 H 0.09 2.18 7.99 -2.39 -0.02 2.16 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 39 H 0.37 18.63 7.71 -92.71 -0.72 17.91 16 40 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 41 H 0.05 1.96 8.03 -2.38 -0.02 1.94 16 42 H 0.09 2.25 5.95 -2.39 -0.01 2.24 16 Total: -1.00 -67.45 366.25 3.78 -63.67 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.35 Total: 24.71 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 4.90 Total: 6.24 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -4.07 Total: -111.07 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.07 Total: -23.20 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.72 Total: -3.96 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.07 Total: -0.99 kcal Total: -67.45 3.78 -63.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054926281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.201 kcal (2) G-P(sol) polarization free energy of solvation -67.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds