Wall clock time and date at job start Sat Apr 11 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 120.00089 * 2 1 4 4 H 1.48509 * 109.47040 * 274.58596 * 3 2 1 5 5 H 1.48498 * 109.47024 * 34.58187 * 3 2 1 6 6 H 1.48497 * 109.47328 * 154.58348 * 3 2 1 7 7 C 1.38812 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99924 * 139.51944 * 7 2 1 9 9 N 1.36934 * 120.00033 * 319.51239 * 7 2 1 10 10 C 1.47169 * 121.20425 * 333.26591 * 9 7 2 11 11 C 1.53230 * 108.69909 * 230.88111 * 10 9 7 12 12 O 1.43087 * 109.41532 * 308.36441 * 11 10 9 13 13 C 1.42671 * 113.86972 * 61.69327 * 12 11 10 14 14 H 1.08998 * 108.88771 * 55.60349 * 13 12 11 15 15 C 1.52489 * 110.67966 * 174.57256 * 13 12 11 16 16 C 1.53155 * 109.83041 * 61.56573 * 15 13 12 17 17 N 1.46982 * 108.46136 * 54.48569 * 16 15 13 18 18 C 1.34767 * 120.74233 * 125.38797 * 17 16 15 19 19 O 1.21739 * 120.00237 * 353.90176 * 18 17 16 20 20 C 1.46296 * 120.00110 * 173.90125 * 18 17 16 21 21 S 1.75821 * 125.46178 * 333.32804 * 20 18 17 22 22 C 1.70603 * 91.60784 * 179.97438 * 21 20 18 23 23 C 1.33729 * 111.03621 * 0.32356 * 22 21 20 24 24 C 1.36920 * 125.46748 * 153.63124 * 20 18 17 25 25 F 1.35100 * 123.40671 * 359.96347 * 24 20 18 26 26 C 1.46808 * 118.51605 * 305.41007 * 17 16 15 27 27 C 1.47577 * 121.20382 * 153.23917 * 9 7 2 28 28 H 1.09004 * 110.28638 * 7.91672 * 27 9 7 29 29 H 0.96996 * 120.00027 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.59931 * 350.64781 * 10 9 7 31 31 H 1.09000 * 109.59966 * 111.11889 * 10 9 7 32 32 H 1.08998 * 109.48584 * 68.35071 * 11 10 9 33 33 H 1.09007 * 109.47944 * 188.37246 * 11 10 9 34 34 H 1.08995 * 109.41093 * 181.67680 * 15 13 12 35 35 H 1.08999 * 109.41122 * 301.46120 * 15 13 12 36 36 H 1.09007 * 109.63347 * 174.17216 * 16 15 13 37 37 H 1.09000 * 109.64333 * 294.78326 * 16 15 13 38 38 H 1.08002 * 124.47959 * 180.02562 * 22 21 20 39 39 H 1.08002 * 122.45553 * 179.72119 * 23 22 21 40 40 H 1.09004 * 109.52240 * 294.44361 * 26 17 16 41 41 H 1.08999 * 109.52168 * 174.26017 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4008 2.1024 -1.3957 5 1 1.4995 2.6228 0.7947 6 1 3.5929 1.4142 0.6009 7 6 2.0103 -1.2021 -0.0005 8 1 2.8964 -1.3138 -0.6078 9 7 1.5715 -2.2464 0.7690 10 6 0.7886 -2.0150 1.9934 11 6 1.4309 -2.7988 3.1428 12 8 1.6124 -4.1615 2.7461 13 6 2.4810 -4.3261 1.6263 14 1 3.4379 -3.8542 1.8496 15 6 2.7288 -5.8051 1.3497 16 6 1.4064 -6.4988 1.0098 17 7 0.7730 -5.7744 -0.1013 18 6 0.4118 -6.4202 -1.2277 19 8 0.7079 -7.5912 -1.3797 20 6 -0.3363 -5.7140 -2.2678 21 16 -1.3920 -4.3327 -2.0054 22 6 -1.7615 -4.2382 -3.6683 23 6 -1.1287 -5.1950 -4.3557 24 6 -0.3313 -6.0263 -3.6009 25 9 0.3831 -7.0472 -4.1230 26 6 0.5431 -4.3317 0.0432 27 6 1.8661 -3.6446 0.4001 28 1 2.5625 -3.6757 -0.4380 29 1 -0.4850 0.8400 0.0004 30 1 0.7881 -0.9513 2.2316 31 1 -0.2348 -2.3588 1.8435 32 1 2.3981 -2.3593 3.3866 33 1 0.7822 -2.7580 4.0178 34 1 3.4171 -5.9064 0.5107 35 1 3.1653 -6.2707 2.2334 36 1 1.5993 -7.5296 0.7124 37 1 0.7497 -6.4822 1.8797 38 1 -2.4229 -3.5058 -4.1070 39 1 -1.2352 -5.3076 -5.4246 40 1 -0.1840 -4.1562 0.8361 41 1 0.1643 -3.9274 -0.8955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074226791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:54 Heat of formation + Delta-G solvation = -44.296509 kcal Electronic energy + Delta-G solvation = -28864.360684 eV Core-core repulsion = 24787.103961 eV Total energy + Delta-G solvation = -4077.256723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.70591 -40.18038 -38.69380 -37.13384 -35.66284 -34.75682 -32.23186 -31.67773 -30.15877 -29.20280 -27.51027 -25.54108 -24.28548 -23.89726 -22.98150 -21.89393 -20.45561 -19.57364 -18.80708 -17.94261 -17.02757 -16.57196 -16.36169 -15.73432 -15.59746 -15.26123 -15.11926 -15.02214 -14.56391 -14.37947 -14.15718 -13.94467 -13.83864 -13.33446 -13.25308 -12.86939 -12.73252 -12.44715 -12.12711 -12.12092 -11.69111 -11.59861 -11.34212 -11.21224 -10.87136 -10.81381 -10.68240 -10.41125 -10.30283 -10.06322 -9.80425 -9.71430 -9.21687 -8.85342 -8.54536 -8.30226 -8.16054 -7.01797 -6.11319 -3.34140 0.51006 1.44747 1.91065 2.27883 3.06969 3.25003 3.32601 3.36895 3.42716 4.21972 4.31251 4.37497 4.66314 4.94990 5.00476 5.11379 5.12924 5.27764 5.35724 5.47868 5.54604 5.61956 5.66222 5.75816 5.83616 5.90379 5.96005 6.00737 6.04989 6.15295 6.21556 6.29572 6.36631 6.38586 6.53958 6.75413 6.78500 7.04880 7.58332 7.68507 7.74518 8.09027 8.31468 8.87358 9.56350 10.17002 10.92588 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.005304 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.543282 B = 5278.228902 C = 7001.282794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.029 3.971 3 Si 0.872 3.128 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.283 4.283 8 H 0.069 0.931 9 N -0.578 5.578 10 C 0.134 3.866 11 C 0.041 3.959 12 O -0.384 6.384 13 C 0.081 3.919 14 H 0.055 0.945 15 C -0.123 4.123 16 C 0.120 3.880 17 N -0.602 5.602 18 C 0.593 3.407 19 O -0.538 6.538 20 C -0.327 4.327 21 S 0.324 5.676 22 C -0.236 4.236 23 C -0.185 4.185 24 C 0.153 3.847 25 F -0.112 7.112 26 C 0.087 3.913 27 C 0.137 3.863 28 H 0.079 0.921 29 H 0.256 0.744 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.176 0.824 39 H 0.151 0.849 40 H 0.077 0.923 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 -7.473 -0.468 7.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.175 4.175 3 Si 0.699 3.301 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.411 4.411 8 H 0.086 0.914 9 N -0.300 5.300 10 C 0.008 3.992 11 C -0.036 4.036 12 O -0.304 6.304 13 C 0.022 3.978 14 H 0.073 0.927 15 C -0.162 4.162 16 C -0.002 4.002 17 N -0.335 5.335 18 C 0.381 3.619 19 O -0.417 6.417 20 C -0.449 4.449 21 S 0.594 5.406 22 C -0.374 4.374 23 C -0.216 4.216 24 C 0.118 3.882 25 F -0.091 7.091 26 C -0.038 4.038 27 C 0.028 3.972 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.193 0.807 39 H 0.169 0.831 40 H 0.096 0.904 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.222 -7.261 0.779 7.982 hybrid contribution 0.917 0.567 -1.695 2.009 sum -2.305 -6.694 -0.916 7.139 Atomic orbital electron populations 1.70394 1.05917 1.26479 1.46996 1.24772 0.94335 0.98937 0.99428 0.86801 0.80764 0.84567 0.77962 1.21282 1.21380 1.20160 1.18890 1.05935 0.89870 1.26356 0.91362 1.44385 1.63529 0.99126 1.22999 1.21393 0.93518 0.99201 0.85059 1.23239 1.00035 0.82446 0.97930 1.87744 1.68005 1.26427 1.48193 1.22226 0.93076 0.94756 0.87788 0.92676 1.21817 0.97617 0.94655 1.02104 1.21532 0.93830 0.96326 0.88464 1.48110 1.59946 1.09927 1.15531 1.16728 0.78728 0.85742 0.80716 1.90807 1.56537 1.15816 1.78563 1.24672 1.14273 1.08414 0.97497 1.84086 1.34201 1.20348 1.02015 1.25563 1.05651 1.03529 1.02700 1.19689 1.01929 0.97797 1.02234 1.16798 0.94128 0.87772 0.89521 1.91528 1.75406 1.55832 1.86319 1.22929 1.01296 0.77194 1.02423 1.21606 0.94025 0.86127 0.95431 0.90293 0.93423 0.90654 0.95062 0.93692 0.89929 0.90310 0.90219 0.89212 0.90613 0.80701 0.83131 0.90450 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.16 12.90 55.49 0.72 -21.44 16 2 C 0.03 0.72 4.24 -17.43 -0.07 0.65 16 3 Si 0.87 19.66 29.69 -169.99 -5.05 14.62 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.28 -7.01 9.48 -15.06 -0.14 -7.16 16 8 H 0.07 1.72 8.06 -52.49 -0.42 1.30 16 9 N -0.58 -12.73 2.71 -163.91 -0.44 -13.17 16 10 C 0.13 2.75 5.29 -3.56 -0.02 2.73 16 11 C 0.04 0.71 6.98 37.28 0.26 0.97 16 12 O -0.38 -6.64 9.62 -35.23 -0.34 -6.98 16 13 C 0.08 1.36 2.71 -26.91 -0.07 1.29 16 14 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 15 C -0.12 -1.74 5.82 -26.91 -0.16 -1.90 16 16 C 0.12 1.81 6.28 -3.70 -0.02 1.79 16 17 N -0.60 -10.27 2.96 -174.46 -0.52 -10.79 16 18 C 0.59 10.93 7.58 -13.03 -0.10 10.84 16 19 O -0.54 -11.11 15.91 5.15 0.08 -11.03 16 20 C -0.33 -5.54 5.87 -36.82 -0.22 -5.75 16 21 S 0.32 4.76 19.05 -107.50 -2.05 2.71 16 22 C -0.24 -2.95 10.91 29.15 0.32 -2.63 16 23 C -0.18 -2.43 10.15 -41.35 -0.42 -2.85 16 24 C 0.15 2.47 7.45 -40.25 -0.30 2.17 16 25 F -0.11 -1.96 16.74 2.25 0.04 -1.92 16 26 C 0.09 1.57 4.75 -3.72 -0.02 1.56 16 27 C 0.14 2.62 3.01 -67.10 -0.20 2.42 16 28 H 0.08 1.59 7.99 -51.93 -0.42 1.17 16 29 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.08 1.68 6.88 -51.93 -0.36 1.33 16 31 H 0.03 0.67 7.18 -51.93 -0.37 0.29 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.34 7.01 -51.92 -0.36 0.97 16 37 H 0.08 1.11 7.96 -51.93 -0.41 0.69 16 38 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.08 1.45 6.59 -51.93 -0.34 1.11 16 41 H 0.09 1.63 3.66 -22.78 -0.08 1.54 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -28.66 341.89 -8.44 -37.10 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.86 Total: 1.63 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.16 Total: 4.13 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.24 Total: -45.40 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.26 Total: -18.01 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.05 Total: 14.62 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -2.05 Total: 2.71 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.66 -8.44 -37.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074226791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.198 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds