Wall clock time and date at job start Sat Apr 11 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00459 * 2 1 4 4 H 1.48497 * 109.47253 * 270.00089 * 3 2 1 5 5 H 1.48504 * 109.47016 * 30.00692 * 3 2 1 6 6 H 1.48498 * 109.47110 * 150.00213 * 3 2 1 7 7 C 1.38811 * 119.99552 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00594 * 202.06556 * 7 2 1 9 9 N 1.36940 * 120.00078 * 22.06089 * 7 2 1 10 10 C 1.47169 * 121.22671 * 28.08198 * 9 7 2 11 11 C 1.53233 * 108.69988 * 129.02121 * 10 9 7 12 12 O 1.43078 * 109.44556 * 51.58550 * 11 10 9 13 13 C 1.42691 * 113.86963 * 298.35321 * 12 11 10 14 14 H 1.08995 * 108.93083 * 304.40693 * 13 12 11 15 15 C 1.52513 * 110.61741 * 185.34735 * 13 12 11 16 16 C 1.51061 * 110.93157 * 297.63136 * 15 13 12 17 17 N 1.46981 * 108.67690 * 306.37235 * 16 15 13 18 18 C 1.34768 * 120.72031 * 234.00528 * 17 16 15 19 19 O 1.21746 * 120.00376 * 5.20112 * 18 17 16 20 20 C 1.46294 * 120.00464 * 185.20579 * 18 17 16 21 21 S 1.75822 * 125.46222 * 37.17959 * 20 18 17 22 22 C 1.70597 * 91.61048 * 179.97438 * 21 20 18 23 23 C 1.33734 * 111.03461 * 0.32758 * 22 21 20 24 24 C 1.36920 * 125.46953 * 217.49229 * 20 18 17 25 25 F 1.35106 * 123.40344 * 359.93634 * 24 20 18 26 26 C 1.46798 * 118.55875 * 53.97915 * 17 16 15 27 27 C 1.47600 * 121.22632 * 208.05243 * 9 7 2 28 28 H 1.09000 * 110.31387 * 352.33611 * 27 9 7 29 29 H 0.97004 * 119.99973 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.59708 * 248.78586 * 10 9 7 31 31 H 1.09010 * 109.60128 * 9.25774 * 10 9 7 32 32 H 1.08997 * 109.47155 * 291.59478 * 11 10 9 33 33 H 1.08996 * 109.47600 * 171.57943 * 11 10 9 34 34 H 1.09001 * 109.41528 * 58.81404 * 15 13 12 35 35 H 1.09007 * 109.41370 * 178.61095 * 15 13 12 36 36 H 1.09001 * 109.97909 * 186.33931 * 16 15 13 37 37 H 1.08998 * 109.23551 * 65.96228 * 16 15 13 38 38 H 1.07994 * 124.48229 * 180.02562 * 22 21 20 39 39 H 1.08004 * 122.45276 * 179.77009 * 23 22 21 40 40 H 1.08995 * 109.52094 * 185.79683 * 26 17 16 41 41 H 1.08994 * 109.52019 * 65.60949 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4399 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0308 -1.2368 0.3508 9 7 1.4005 -2.3445 -0.4465 10 6 0.3273 -2.2938 -1.4522 11 6 0.6638 -3.2754 -2.5797 12 8 0.9593 -4.5591 -2.0213 13 6 2.0879 -4.5630 -1.1481 14 1 2.9496 -4.1627 -1.6822 15 6 2.4159 -5.9837 -0.7009 16 6 1.2718 -6.5799 0.0849 17 7 0.9287 -5.6658 1.1836 18 6 0.8893 -6.1045 2.4573 19 8 1.2308 -7.2433 2.7198 20 6 0.4361 -5.2125 3.5246 21 16 -0.8587 -4.0312 3.3857 22 6 -0.6486 -3.5391 5.0055 23 6 0.3392 -4.2245 5.5912 24 6 0.9562 -5.1594 4.7900 25 9 1.9721 -5.9447 5.2102 26 6 0.6304 -4.2646 0.8635 27 6 1.7961 -3.6719 0.0633 28 1 2.6822 -3.5870 0.6925 29 1 -0.4850 0.8401 0.0004 30 1 -0.6192 -2.5767 -0.9914 31 1 0.2524 -1.2842 -1.8565 32 1 1.5300 -2.9111 -3.1320 33 1 -0.1881 -3.3599 -3.2543 34 1 2.6220 -6.6005 -1.5757 35 1 3.2944 -5.9667 -0.0557 36 1 1.5638 -7.5482 0.4914 37 1 0.4107 -6.7029 -0.5719 38 1 -1.2324 -2.7719 5.4921 39 1 0.6310 -4.0577 6.6176 40 1 0.4981 -3.7003 1.7866 41 1 -0.2823 -4.2129 0.2699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074226792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:58 Heat of formation + Delta-G solvation = -48.282487 kcal Electronic energy + Delta-G solvation = -28868.544746 eV Core-core repulsion = 24791.115179 eV Total energy + Delta-G solvation = -4077.429568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.75191 -40.19363 -38.67433 -37.18268 -35.69725 -34.73943 -32.25065 -31.59272 -30.10328 -29.24483 -27.46438 -25.53586 -24.33330 -23.87440 -22.90238 -21.85269 -20.45263 -19.60808 -18.77555 -17.94129 -17.00521 -16.65986 -16.40539 -15.69406 -15.57537 -15.26818 -15.15411 -15.00893 -14.55750 -14.41889 -14.12515 -13.94807 -13.80764 -13.28359 -13.24997 -12.83743 -12.71185 -12.44720 -12.13595 -12.10042 -11.73764 -11.38481 -11.28169 -11.10899 -10.94779 -10.78075 -10.68758 -10.37983 -10.31253 -10.06918 -9.82346 -9.67209 -9.12550 -8.86919 -8.67505 -8.33784 -8.25308 -6.87558 -5.99659 -3.41790 0.49234 1.36037 1.83898 2.25718 3.00081 3.26759 3.30470 3.35221 3.36507 4.26087 4.31141 4.33970 4.64686 4.96791 5.08023 5.14028 5.20375 5.27417 5.30447 5.52427 5.57083 5.63080 5.67710 5.77895 5.84572 5.89953 5.99619 6.06150 6.13284 6.18919 6.25421 6.31898 6.34325 6.44977 6.57551 6.79744 6.92193 7.28537 7.57953 7.64446 7.80710 8.17711 8.29483 8.95990 9.58268 10.17369 11.07566 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.005449 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.404946 B = 5137.119841 C = 6857.616706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.013 3.987 3 Si 0.899 3.101 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.580 5.580 10 C 0.139 3.861 11 C 0.039 3.961 12 O -0.386 6.386 13 C 0.082 3.918 14 H 0.054 0.946 15 C -0.124 4.124 16 C 0.120 3.880 17 N -0.599 5.599 18 C 0.593 3.407 19 O -0.537 6.537 20 C -0.318 4.318 21 S 0.308 5.692 22 C -0.229 4.229 23 C -0.181 4.181 24 C 0.149 3.851 25 F -0.113 7.113 26 C 0.086 3.914 27 C 0.136 3.864 28 H 0.076 0.924 29 H 0.256 0.744 30 H 0.031 0.969 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.177 0.823 39 H 0.153 0.847 40 H 0.087 0.913 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.186 -7.273 3.341 8.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.187 4.187 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.391 4.391 8 H 0.086 0.914 9 N -0.303 5.303 10 C 0.013 3.987 11 C -0.039 4.039 12 O -0.305 6.305 13 C 0.023 3.977 14 H 0.072 0.928 15 C -0.162 4.162 16 C -0.002 4.002 17 N -0.332 5.332 18 C 0.380 3.620 19 O -0.417 6.417 20 C -0.439 4.439 21 S 0.576 5.424 22 C -0.367 4.367 23 C -0.213 4.213 24 C 0.114 3.886 25 F -0.092 7.092 26 C -0.039 4.039 27 C 0.027 3.973 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.195 0.805 39 H 0.171 0.829 40 H 0.104 0.896 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.187 -7.421 2.295 8.396 hybrid contribution 1.629 0.978 1.432 2.379 sum -1.558 -6.443 3.727 7.604 Atomic orbital electron populations 1.70078 1.05291 1.25957 1.52034 1.25020 0.95162 0.98532 1.00018 0.86345 0.79406 0.83496 0.77871 1.21258 1.21682 1.20297 1.19126 0.94524 0.85042 1.40448 0.91408 1.44283 1.42505 1.00168 1.43324 1.21397 0.90545 0.98507 0.88215 1.23308 0.99497 0.84420 0.96670 1.87741 1.48915 1.30872 1.62966 1.22215 0.88938 0.94663 0.91918 0.92754 1.21438 0.98776 0.95913 1.00113 1.21136 0.98279 0.93258 0.87502 1.48131 1.67924 1.11669 1.05494 1.16725 0.77878 0.85859 0.81522 1.90807 1.49597 1.18776 1.82476 1.24611 1.10319 1.10142 0.98853 1.83764 1.28190 1.25883 1.04560 1.25327 1.03748 1.05899 1.01712 1.19706 0.99736 0.99220 1.02593 1.16777 0.88498 0.92427 0.90856 1.91529 1.55979 1.71894 1.89782 1.22817 1.01181 0.78614 1.01257 1.21569 0.95817 0.86967 0.92911 0.90630 0.93406 0.95085 0.89508 0.93965 0.90031 0.90118 0.90552 0.89152 0.90783 0.80526 0.82917 0.89558 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.32 11.64 55.49 0.65 -22.67 16 2 C 0.01 0.33 4.79 -17.43 -0.08 0.25 16 3 Si 0.90 20.23 29.61 -169.99 -5.03 15.19 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.26 -6.58 9.63 -15.06 -0.15 -6.73 16 8 H 0.07 1.71 7.92 -52.49 -0.42 1.30 16 9 N -0.58 -13.07 2.72 -163.86 -0.45 -13.52 16 10 C 0.14 2.96 4.99 -3.56 -0.02 2.94 16 11 C 0.04 0.69 6.98 37.28 0.26 0.95 16 12 O -0.39 -6.86 9.73 -35.23 -0.34 -7.20 16 13 C 0.08 1.41 2.72 -26.88 -0.07 1.34 16 14 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 15 C -0.12 -1.78 5.67 -27.96 -0.16 -1.94 16 16 C 0.12 1.82 6.23 -4.75 -0.03 1.79 16 17 N -0.60 -10.26 2.96 -175.72 -0.52 -10.78 16 18 C 0.59 10.87 7.51 -13.03 -0.10 10.77 16 19 O -0.54 -11.04 16.23 5.15 0.08 -10.96 16 20 C -0.32 -5.31 5.54 -36.82 -0.20 -5.51 16 21 S 0.31 4.34 19.73 -107.50 -2.12 2.22 16 22 C -0.23 -2.74 10.91 29.15 0.32 -2.42 16 23 C -0.18 -2.32 10.15 -41.35 -0.42 -2.74 16 24 C 0.15 2.38 7.46 -40.25 -0.30 2.08 16 25 F -0.11 -1.95 17.00 2.25 0.04 -1.91 16 26 C 0.09 1.58 4.86 -3.72 -0.02 1.56 16 27 C 0.14 2.66 2.97 -67.07 -0.20 2.46 16 28 H 0.08 1.54 7.99 -51.93 -0.42 1.12 16 29 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.03 0.69 7.26 -51.93 -0.38 0.32 16 31 H 0.09 2.05 6.45 -51.92 -0.34 1.71 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 37 H 0.07 1.09 8.00 -51.93 -0.42 0.68 16 38 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.09 1.63 4.22 -30.96 -0.13 1.50 16 41 H 0.08 1.46 6.72 -51.93 -0.35 1.11 16 LS Contribution 342.05 15.07 5.15 5.15 Total: -1.00 -28.99 342.05 -8.60 -37.60 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.90 Total: 2.07 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.17 Total: 4.81 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.32 Total: -46.97 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.26 Total: -18.16 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.19 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -2.12 Total: 2.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.99 -8.60 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074226792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.684 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds