Wall clock time and date at job start Sat Apr 11 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48497 * 109.47203 * 270.00083 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00600 * 3 2 1 6 6 H 1.48507 * 109.46729 * 150.00422 * 3 2 1 7 7 C 1.38810 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00294 * 124.49023 * 7 2 1 9 9 N 1.36940 * 119.99815 * 304.48669 * 7 2 1 10 10 C 1.47331 * 121.34266 * 5.02601 * 9 7 2 11 11 C 1.53194 * 108.81482 * 230.30685 * 10 9 7 12 12 O 1.43153 * 109.69377 * 308.70922 * 11 10 9 13 13 C 1.42594 * 113.63683 * 61.70872 * 12 11 10 14 14 H 1.09000 * 109.33926 * 55.60425 * 13 12 11 15 15 C 1.52787 * 111.11773 * 176.39011 * 13 12 11 16 16 C 1.53377 * 108.81025 * 182.56056 * 15 13 12 17 17 N 1.46835 * 109.24685 * 306.16758 * 16 15 13 18 18 C 1.34780 * 120.40757 * 232.21744 * 17 16 15 19 19 O 1.21737 * 119.99928 * 173.96239 * 18 17 16 20 20 C 1.46290 * 119.99745 * 353.96487 * 18 17 16 21 21 S 1.75823 * 125.46697 * 335.47279 * 20 18 17 22 22 C 1.70594 * 91.61000 * 179.91560 * 21 20 18 23 23 C 1.33736 * 111.03828 * 0.35454 * 22 21 20 24 24 C 1.36924 * 125.46354 * 155.78381 * 20 18 17 25 25 F 1.35104 * 123.40992 * 0.03036 * 24 20 18 26 26 C 1.47135 * 119.18711 * 52.24512 * 17 16 15 27 27 C 1.46875 * 121.30481 * 185.00835 * 9 7 2 28 28 H 1.08995 * 110.21464 * 247.97561 * 27 9 7 29 29 H 0.97001 * 120.00017 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.62230 * 110.48799 * 10 9 7 31 31 H 1.09000 * 109.53745 * 350.08255 * 10 9 7 32 32 H 1.08999 * 109.43184 * 188.64947 * 11 10 9 33 33 H 1.08999 * 109.42418 * 68.75859 * 11 10 9 34 34 H 1.09002 * 109.58114 * 302.35212 * 15 13 12 35 35 H 1.08993 * 109.58278 * 62.76234 * 15 13 12 36 36 H 1.08994 * 109.50794 * 66.09972 * 16 15 13 37 37 H 1.09001 * 109.50358 * 186.23769 * 16 15 13 38 38 H 1.07996 * 124.48448 * 180.08603 * 22 21 20 39 39 H 1.07999 * 122.45422 * 179.74520 * 23 22 21 40 40 H 1.08999 * 109.72808 * 66.43673 * 26 17 16 41 41 H 1.09000 * 109.72536 * 187.07011 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 2.7389 -1.4047 -0.7715 9 7 1.7710 -2.1313 0.9766 10 6 0.7083 -1.9341 1.9779 11 6 1.2965 -2.1620 3.3739 12 8 1.9865 -3.4158 3.4080 13 6 3.0872 -3.4874 2.5043 14 1 3.7717 -2.6628 2.7032 15 6 3.8344 -4.8120 2.6508 16 6 5.0410 -4.8065 1.7040 17 7 4.5860 -4.5005 0.3418 18 6 4.9232 -5.3037 -0.6866 19 8 4.4534 -5.1067 -1.7922 20 6 5.8538 -6.4123 -0.4742 21 16 7.0612 -6.5007 0.8009 22 6 7.5901 -8.0298 0.2602 23 6 6.8975 -8.4254 -0.8133 24 6 5.9284 -7.5448 -1.2401 25 9 5.1322 -7.7751 -2.3070 26 6 3.7580 -3.3059 0.1133 27 6 2.5637 -3.3644 1.0676 28 1 1.9445 -4.2287 0.8277 29 1 -0.4850 0.8401 0.0004 30 1 -0.0981 -2.6458 1.8007 31 1 0.3232 -0.9170 1.9053 32 1 0.4921 -2.1707 4.1093 33 1 1.9939 -1.3580 3.6091 34 1 4.1776 -4.9261 3.6791 35 1 3.1705 -5.6366 2.3915 36 1 5.7546 -4.0490 2.0281 37 1 5.5182 -5.7864 1.7169 38 1 8.3825 -8.6008 0.7210 39 1 7.0843 -9.3665 -1.3091 40 1 4.3440 -2.4086 0.3117 41 1 3.4054 -3.2946 -0.9181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074226793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:00 Heat of formation + Delta-G solvation = -54.076311 kcal Electronic energy + Delta-G solvation = -28323.959533 eV Core-core repulsion = 24246.278726 eV Total energy + Delta-G solvation = -4077.680807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.02614 -41.62227 -40.16885 -38.34824 -37.51214 -36.59671 -33.84219 -33.16001 -31.87458 -30.74284 -28.96950 -27.11579 -25.74099 -25.55476 -23.83665 -23.13497 -21.92605 -21.28086 -20.52425 -19.41616 -18.83624 -17.87555 -17.85249 -17.18659 -17.01529 -16.83140 -16.55888 -16.39916 -16.15522 -15.75212 -15.61882 -15.34257 -14.97098 -14.86737 -14.74564 -14.65004 -14.34424 -13.98759 -13.70969 -13.46377 -13.30649 -12.96750 -12.88923 -12.77424 -12.48220 -12.38720 -12.23624 -11.97258 -11.84159 -11.57480 -11.29058 -11.25503 -10.89217 -10.20931 -10.08285 -9.78408 -9.34631 -9.15561 -8.26393 -5.05785 -0.71486 0.21217 0.75306 1.14202 1.38818 1.50678 1.59411 1.63762 1.89880 2.46156 2.77482 2.83969 3.25382 3.31213 3.37542 3.75537 3.80260 3.92075 3.97008 4.14607 4.17451 4.31706 4.34588 4.38635 4.42883 4.50931 4.55530 4.70556 4.73301 4.78295 4.86589 4.92149 5.03054 5.06272 5.19895 5.22013 5.29938 5.32918 5.73104 6.01623 6.15609 6.27182 6.88400 6.90844 7.70726 8.25792 8.83464 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.003622 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.932016 B = 7728.185839 C = 8451.591321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.004 3.996 3 Si 0.892 3.108 4 H -0.292 1.292 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.313 4.313 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.116 3.884 11 C 0.057 3.943 12 O -0.388 6.388 13 C 0.081 3.919 14 H 0.065 0.935 15 C -0.112 4.112 16 C 0.095 3.905 17 N -0.604 5.604 18 C 0.581 3.419 19 O -0.580 6.580 20 C -0.365 4.365 21 S 0.352 5.648 22 C -0.199 4.199 23 C -0.191 4.191 24 C 0.140 3.860 25 F -0.133 7.133 26 C 0.139 3.861 27 C 0.139 3.861 28 H 0.005 0.995 29 H 0.260 0.740 30 H -0.002 1.002 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.052 0.948 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.225 0.775 39 H 0.177 0.823 40 H 0.085 0.915 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.177 -16.340 10.864 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.198 4.198 3 Si 0.717 3.283 4 H -0.219 1.219 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.438 4.438 8 H 0.097 0.903 9 N -0.329 5.329 10 C -0.009 4.009 11 C -0.020 4.020 12 O -0.307 6.307 13 C 0.021 3.979 14 H 0.083 0.917 15 C -0.151 4.151 16 C -0.027 4.027 17 N -0.337 5.337 18 C 0.371 3.629 19 O -0.462 6.462 20 C -0.486 4.486 21 S 0.619 5.381 22 C -0.336 4.336 23 C -0.220 4.220 24 C 0.104 3.896 25 F -0.112 7.112 26 C 0.016 3.984 27 C 0.031 3.969 28 H 0.022 0.978 29 H 0.070 0.930 30 H 0.016 0.984 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.241 0.759 39 H 0.194 0.806 40 H 0.103 0.897 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.153 -15.347 11.524 27.114 hybrid contribution -1.303 0.365 -2.587 2.920 sum 17.850 -14.982 8.937 24.958 Atomic orbital electron populations 1.70755 1.07763 1.27627 1.44767 1.25048 0.94360 1.00356 1.00007 0.86391 0.81244 0.83023 0.77660 1.21885 1.21290 1.19809 1.19063 1.20824 0.94437 1.09507 0.90300 1.44598 1.37062 1.19548 1.31679 1.21720 0.89604 1.00937 0.88663 1.23066 0.96538 0.85436 0.97004 1.87750 1.45632 1.36398 1.60892 1.22515 0.88165 0.99166 0.88044 0.91683 1.21842 0.95979 0.95081 1.02161 1.22522 0.97153 1.04015 0.79053 1.48139 1.51459 1.25482 1.08603 1.17329 0.80450 0.81127 0.83987 1.90848 1.56570 1.72619 1.26134 1.24554 1.11784 1.01554 1.10662 1.82902 1.20929 1.13175 1.21053 1.26058 1.04659 1.03396 0.99510 1.19952 0.97756 1.03133 1.01199 1.17595 0.92210 0.94299 0.85470 1.91502 1.72163 1.94325 1.53205 1.21412 0.91216 0.86266 0.99462 1.21343 0.91708 0.88017 0.95806 0.97756 0.93041 0.98445 0.90300 0.86896 0.92937 0.85484 0.91598 0.87078 0.87053 0.75878 0.80567 0.89669 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.36 12.00 21.65 0.26 -50.10 16 2 C 0.00 0.20 4.33 84.86 0.37 0.57 16 3 Si 0.89 42.56 29.69 68.60 2.04 44.59 16 4 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.31 -17.35 8.93 84.03 0.75 -16.60 16 8 H 0.08 4.46 6.20 -2.91 -0.02 4.44 16 9 N -0.60 -30.52 3.08 -673.94 -2.07 -32.59 16 10 C 0.12 5.55 6.23 86.29 0.54 6.08 16 11 C 0.06 2.11 6.96 72.05 0.50 2.61 16 12 O -0.39 -13.89 10.49 -148.98 -1.56 -15.46 16 13 C 0.08 2.68 2.48 30.66 0.08 2.76 16 14 H 0.07 2.11 8.13 -2.39 -0.02 2.09 16 15 C -0.11 -2.58 5.82 30.65 0.18 -2.40 16 16 C 0.09 1.95 5.44 86.44 0.47 2.42 16 17 N -0.60 -19.47 2.98 -823.76 -2.46 -21.93 16 18 C 0.58 20.88 7.59 86.34 0.65 21.54 16 19 O -0.58 -27.27 15.84 -4.47 -0.07 -27.34 16 20 C -0.37 -9.44 5.91 24.06 0.14 -9.30 16 21 S 0.35 4.11 18.91 -56.49 -1.07 3.04 16 22 C -0.20 -1.61 10.91 66.80 0.73 -0.88 16 23 C -0.19 -2.80 10.15 21.12 0.21 -2.59 16 24 C 0.14 3.58 7.45 21.84 0.16 3.75 16 25 F -0.13 -4.42 16.69 44.97 0.75 -3.67 16 26 C 0.14 5.65 4.45 86.26 0.38 6.03 16 27 C 0.14 5.97 3.03 45.05 0.14 6.10 16 28 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 31 H 0.08 4.10 5.48 -2.39 -0.01 4.09 16 32 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.11 1.68 3.63 -21.44 -0.08 1.60 16 38 H 0.22 -0.20 8.06 -2.91 -0.02 -0.22 16 39 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.09 3.37 7.78 -2.39 -0.02 3.35 16 41 H 0.06 2.91 6.33 -2.39 -0.02 2.89 16 Total: -1.00 -79.51 339.65 2.13 -77.38 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.01 Total: 5.99 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 5.31 Total: 20.07 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -4.27 Total: -104.62 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -1.63 Total: -42.79 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.75 Total: -3.67 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.04 Total: 44.59 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.07 Total: 3.04 kcal Total: -79.51 2.13 -77.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074226793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.308 kcal (2) G-P(sol) polarization free energy of solvation -79.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds