Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99732 * 2 1 4 4 H 1.48498 * 109.46901 * 263.90214 * 3 2 1 5 5 H 1.48500 * 109.47441 * 23.90518 * 3 2 1 6 6 H 1.48504 * 109.46848 * 143.90629 * 3 2 1 7 7 C 1.38809 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99647 * 25.57095 * 7 2 1 9 9 N 1.36932 * 119.99970 * 205.57655 * 7 2 1 10 10 C 1.47180 * 121.21956 * 49.54908 * 9 7 2 11 11 C 1.53236 * 108.69053 * 129.04133 * 10 9 7 12 12 O 1.43066 * 109.45274 * 51.58254 * 11 10 9 13 13 C 1.42688 * 113.87771 * 298.35555 * 12 11 10 14 14 H 1.08996 * 108.92217 * 305.04820 * 13 12 11 15 15 C 1.52512 * 110.62618 * 185.34602 * 13 12 11 16 16 C 1.53154 * 109.79812 * 298.68376 * 15 13 12 17 17 N 1.46986 * 108.43950 * 305.46654 * 16 15 13 18 18 C 1.34781 * 120.72710 * 234.57723 * 17 16 15 19 19 O 1.21735 * 119.99592 * 354.95976 * 18 17 16 20 20 C 1.46333 * 120.00400 * 174.96026 * 18 17 16 21 21 C 1.36735 * 125.43653 * 224.13788 * 20 18 17 22 22 C 1.37347 * 113.33017 * 179.86021 * 21 20 18 23 23 C 1.34211 * 115.04558 * 0.43314 * 22 21 20 24 24 F 1.35104 * 124.53899 * 179.73883 * 23 22 21 25 25 S 1.70609 * 110.91629 * 359.75852 * 23 22 21 26 26 C 1.46791 * 118.55308 * 54.55897 * 17 16 15 27 27 C 1.47589 * 121.22314 * 229.52750 * 9 7 2 28 28 H 1.09005 * 111.16105 * 352.80583 * 27 9 7 29 29 H 0.96994 * 120.00195 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.60912 * 9.27707 * 10 9 7 31 31 H 1.09000 * 109.60120 * 248.79798 * 10 9 7 32 32 H 1.09000 * 109.47378 * 291.58721 * 11 10 9 33 33 H 1.09000 * 109.47265 * 171.57715 * 11 10 9 34 34 H 1.08998 * 109.41128 * 58.78109 * 15 13 12 35 35 H 1.08995 * 109.41505 * 178.57974 * 15 13 12 36 36 H 1.09002 * 109.64662 * 65.15341 * 16 15 13 37 37 H 1.09001 * 109.63977 * 185.78336 * 16 15 13 38 38 H 1.07992 * 123.33530 * 0.03867 * 21 20 18 39 39 H 1.07998 * 122.47978 * 180.21217 * 22 21 20 40 40 H 1.08996 * 109.52661 * 65.61018 * 26 17 16 41 41 H 1.09008 * 109.52250 * 185.73513 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6264 1.9721 -1.3921 5 1 1.3892 2.6865 0.5673 6 1 3.4775 1.4808 0.8248 7 6 2.0103 -1.2021 0.0005 8 1 1.5496 -2.0918 -0.4028 9 7 3.2790 -1.2600 0.5125 10 6 3.5930 -0.7019 1.8377 11 6 4.3331 -1.7655 2.6557 12 8 5.4345 -2.2706 1.8950 13 6 5.0514 -2.9086 0.6776 14 1 4.3291 -3.6934 0.9020 15 6 6.2634 -3.5325 -0.0065 16 6 7.2814 -2.4422 -0.3537 17 7 6.6033 -1.4098 -1.1505 18 6 7.0850 -1.0421 -2.3544 19 8 8.1408 -1.4986 -2.7527 20 6 6.3388 -0.0941 -3.1826 21 6 6.1198 -0.2170 -4.5267 22 6 5.3845 0.8160 -5.0547 23 6 5.0194 1.7613 -4.1747 24 9 4.2992 2.8610 -4.4866 25 16 5.5872 1.3885 -2.6097 26 6 5.3898 -0.7881 -0.6066 27 6 4.3816 -1.8847 -0.2440 28 1 4.0128 -2.3724 -1.1464 29 1 -0.4850 0.8400 -0.0004 30 1 2.6695 -0.4262 2.3468 31 1 4.2267 0.1776 1.7233 32 1 3.6505 -2.5817 2.8927 33 1 4.7029 -1.3211 3.5797 34 1 6.7240 -4.2581 0.6638 35 1 5.9451 -4.0352 -0.9197 36 1 7.6718 -2.0000 0.5629 37 1 8.0978 -2.8742 -0.9324 38 1 6.4861 -1.0457 -5.1143 39 1 5.1227 0.8658 -6.1012 40 1 5.6424 -0.2160 0.2861 41 1 4.9544 -0.1243 -1.3536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074416670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = -60.317998 kcal Electronic energy + Delta-G solvation = -29007.031705 eV Core-core repulsion = 24929.080239 eV Total energy + Delta-G solvation = -4077.951466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.26274 -41.69187 -40.28645 -38.55566 -37.11818 -36.48846 -33.87450 -33.48122 -31.62525 -30.35756 -29.37798 -26.85636 -25.82680 -25.31872 -24.58278 -23.28260 -22.00076 -20.99961 -20.33115 -19.43593 -18.93640 -18.17586 -17.66033 -17.28514 -17.22643 -17.11631 -16.79296 -16.54803 -16.12880 -15.88694 -15.67231 -15.65316 -15.10004 -14.79978 -14.55951 -14.41909 -14.24134 -13.89189 -13.69784 -13.59462 -13.32463 -13.13246 -12.98543 -12.71682 -12.66753 -12.35956 -12.20273 -11.99286 -11.89955 -11.60327 -11.31740 -11.14018 -10.88359 -10.43337 -10.00522 -9.76188 -9.74276 -8.53136 -8.30515 -5.80741 -0.78683 -0.20967 0.37593 1.14919 1.32365 1.40153 1.45829 1.64130 1.94321 2.39026 2.81995 2.95791 3.09944 3.15866 3.44790 3.69104 3.99581 4.01757 4.11132 4.13982 4.17435 4.20808 4.35322 4.41507 4.46695 4.54458 4.65895 4.70920 4.76545 4.79981 4.85759 4.92859 4.94475 4.99644 5.09228 5.16872 5.24014 5.38067 5.87493 6.13434 6.20731 6.30053 6.84924 6.90759 7.47314 8.03097 8.87841 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.007199 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.498184 B = 3888.646292 C = 6171.533589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.012 3.988 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.305 1.305 6 H -0.225 1.225 7 C -0.267 4.267 8 H 0.036 0.964 9 N -0.602 5.602 10 C 0.097 3.903 11 C 0.054 3.946 12 O -0.379 6.379 13 C 0.084 3.916 14 H 0.051 0.949 15 C -0.114 4.114 16 C 0.118 3.882 17 N -0.596 5.596 18 C 0.597 3.403 19 O -0.553 6.553 20 C -0.272 4.272 21 C -0.035 4.035 22 C -0.166 4.166 23 C -0.053 4.053 24 F -0.108 7.108 25 S 0.215 5.785 26 C 0.092 3.908 27 C 0.129 3.871 28 H 0.073 0.927 29 H 0.265 0.735 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.185 0.815 39 H 0.188 0.812 40 H 0.073 0.927 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.473 -1.579 -2.736 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.188 4.188 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.232 1.232 6 H -0.148 1.148 7 C -0.396 4.396 8 H 0.053 0.947 9 N -0.327 5.327 10 C -0.028 4.028 11 C -0.024 4.024 12 O -0.298 6.298 13 C 0.025 3.975 14 H 0.070 0.930 15 C -0.152 4.152 16 C -0.003 4.003 17 N -0.328 5.328 18 C 0.384 3.616 19 O -0.434 6.434 20 C -0.392 4.392 21 C -0.067 4.067 22 C -0.198 4.198 23 C -0.190 4.190 24 F -0.087 7.087 25 S 0.481 5.519 26 C -0.034 4.034 27 C 0.022 3.978 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.202 0.798 39 H 0.205 0.795 40 H 0.092 0.908 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.881 -0.926 -1.471 14.982 hybrid contribution -1.190 0.883 -1.648 2.216 sum 13.690 -0.043 -3.118 14.041 Atomic orbital electron populations 1.70026 1.07991 1.27806 1.51466 1.26281 0.95233 1.00867 0.96432 0.86610 0.81155 0.80672 0.79570 1.20229 1.23232 1.14845 1.18370 0.89223 0.92933 1.39093 0.94689 1.44416 1.04527 1.69549 1.14197 1.22183 0.98740 0.95709 0.86137 1.23076 0.88771 0.96236 0.94280 1.87773 1.32335 1.76194 1.33531 1.22227 0.96550 0.93428 0.85285 0.93047 1.21810 0.94369 0.97758 1.01241 1.21740 0.95308 0.87796 0.95439 1.48126 1.26976 1.39981 1.17672 1.16907 0.83919 0.80247 0.80533 1.90800 1.22368 1.57632 1.72575 1.24451 1.12781 1.02532 0.99481 1.20663 0.95325 0.99353 0.91359 1.20549 1.02410 0.93556 1.03281 1.22420 1.04771 0.91183 1.00669 1.91506 1.75124 1.49516 1.92527 1.84009 1.47009 1.16276 1.04619 1.22595 0.84632 0.97148 0.98998 1.21851 0.87684 0.93096 0.95142 0.90894 0.92615 0.92162 0.94136 0.93505 0.86439 0.87256 0.89438 0.89913 0.88174 0.79750 0.79476 0.90845 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.97 21.65 0.30 -54.93 16 2 C 0.01 0.65 5.15 84.86 0.44 1.08 16 3 Si 0.89 41.42 27.53 68.60 1.89 43.30 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 6 H -0.22 -9.28 4.82 99.48 0.48 -8.80 16 7 C -0.27 -14.00 9.78 84.03 0.82 -13.18 16 8 H 0.04 2.09 8.06 -2.91 -0.02 2.06 16 9 N -0.60 -25.58 2.00 -672.34 -1.35 -26.92 16 10 C 0.10 3.62 4.27 86.33 0.37 3.99 16 11 C 0.05 1.62 6.97 72.06 0.50 2.12 16 12 O -0.38 -11.24 9.59 -148.98 -1.43 -12.67 16 13 C 0.08 2.49 2.72 30.50 0.08 2.58 16 14 H 0.05 1.61 8.12 -2.39 -0.02 1.59 16 15 C -0.11 -2.55 5.82 30.48 0.18 -2.37 16 16 C 0.12 2.86 6.25 86.34 0.54 3.40 16 17 N -0.60 -17.45 2.96 -824.00 -2.44 -19.89 16 18 C 0.60 18.35 7.53 86.35 0.65 19.00 16 19 O -0.55 -18.73 16.52 -4.46 -0.07 -18.80 16 20 C -0.27 -7.89 5.55 24.02 0.13 -7.75 16 21 C -0.03 -0.84 10.23 21.71 0.22 -0.62 16 22 C -0.17 -3.89 10.16 21.14 0.21 -3.68 16 23 C -0.05 -1.54 8.10 66.90 0.54 -1.00 16 24 F -0.11 -3.30 17.32 44.97 0.78 -2.53 16 25 S 0.21 6.54 19.77 -56.49 -1.12 5.42 16 26 C 0.09 3.05 5.13 86.43 0.44 3.49 16 27 C 0.13 4.62 3.00 44.95 0.13 4.75 16 28 H 0.07 2.78 8.03 -2.38 -0.02 2.76 16 29 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.06 2.45 7.57 -2.39 -0.02 2.43 16 31 H 0.04 1.50 5.35 -2.39 -0.01 1.49 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.12 2.77 8.14 -2.39 -0.02 2.76 16 34 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.08 1.94 7.95 -2.39 -0.02 1.93 16 37 H 0.10 2.32 7.04 -2.39 -0.02 2.30 16 38 H 0.19 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.07 2.48 6.56 -2.39 -0.02 2.47 16 41 H 0.07 2.64 3.80 -17.80 -0.07 2.58 16 Total: -1.00 -64.13 338.83 2.62 -61.51 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.79 Total: 13.71 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 5.27 Total: 11.80 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -3.48 Total: -101.75 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.50 Total: -31.47 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.89 Total: 43.30 kcal Atomic # 16 Polarization: 6.54 SS G_CDS: -1.12 Total: 5.42 kcal Total: -64.13 2.62 -61.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074416670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.192 kcal (2) G-P(sol) polarization free energy of solvation -64.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds