Wall clock time and date at job start Sat Apr 11 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38453 * 119.83549 * 2 1 4 4 C 1.37854 * 120.23033 * 179.97438 * 3 2 1 5 5 C 1.39673 * 119.90414 * 0.02562 * 4 3 2 6 6 C 1.47697 * 120.16183 * 179.97438 * 5 4 3 7 7 O 1.21570 * 119.99677 * 180.02562 * 6 5 4 8 8 N 1.34768 * 119.99721 * 0.02562 * 6 5 4 9 9 C 1.46501 * 119.99654 * 179.97438 * 8 6 5 10 10 H 1.08995 * 110.91693 * 37.45172 * 9 8 6 11 11 C 1.54908 * 111.00655 * 273.54684 * 9 8 6 12 12 N 1.47426 * 104.92948 * 204.86061 * 11 9 8 13 13 C 1.36940 * 125.64782 * 204.15046 * 12 11 9 14 14 H 1.07998 * 120.00050 * 161.52040 * 13 12 11 15 15 C 1.38813 * 119.99845 * 341.52923 * 13 12 11 16 16 N 1.31625 * 119.99502 * 157.60351 * 15 13 12 17 17 Si 1.86792 * 120.00162 * 337.60447 * 15 13 12 18 18 H 1.48498 * 109.47196 * 84.54220 * 17 15 13 19 19 H 1.48510 * 109.47106 * 204.53762 * 17 15 13 20 20 H 1.48492 * 109.47267 * 324.53766 * 17 15 13 21 21 C 1.47283 * 108.55833 * 24.15781 * 12 11 9 22 22 C 1.54326 * 107.30758 * 358.92209 * 21 12 11 23 23 H 1.09001 * 110.71993 * 96.18105 * 22 21 12 24 24 C 1.53002 * 110.87198 * 219.38268 * 22 21 12 25 25 C 1.39794 * 119.67402 * 0.26039 * 5 4 3 26 26 F 1.35105 * 120.11273 * 179.71498 * 25 5 4 27 27 C 1.38294 * 119.84122 * 179.97438 * 2 1 3 28 28 Cl 1.73604 * 119.95095 * 0.03999 * 27 2 1 29 29 H 1.08999 * 109.47221 * 89.99785 * 1 2 3 30 30 H 1.09002 * 109.47071 * 209.99726 * 1 2 3 31 31 H 1.09002 * 109.46822 * 329.99844 * 1 2 3 32 32 H 1.08002 * 119.88616 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.04760 * 180.02562 * 4 3 2 34 34 H 0.96998 * 120.00823 * 0.02562 * 8 6 5 35 35 H 1.09001 * 110.37003 * 323.75413 * 11 9 8 36 36 H 1.09001 * 110.36869 * 85.97128 * 11 9 8 37 37 H 0.97002 * 119.99552 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.85734 * 239.50139 * 21 12 11 39 39 H 1.09005 * 109.87758 * 118.35699 * 21 12 11 40 40 H 1.09000 * 109.46733 * 173.60874 * 24 22 21 41 41 H 1.09003 * 109.47391 * 293.60974 * 24 22 21 42 42 H 1.09001 * 109.46602 * 53.60992 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2010 0.0000 4 6 3.5743 1.2105 0.0005 5 6 4.2790 0.0046 0.0005 6 6 5.7559 0.0081 0.0005 7 8 6.3662 -1.0433 0.0001 8 7 6.4269 1.1769 0.0011 9 6 7.8919 1.1804 0.0016 10 1 8.2832 0.3732 -0.6175 11 6 8.4469 1.0919 1.4452 12 7 9.7882 1.6996 1.3743 13 6 10.8242 1.4493 2.2342 14 1 11.8358 1.6952 1.9469 15 6 10.5740 0.8795 3.4750 16 7 11.5331 0.2408 4.1112 17 14 8.8765 1.0190 4.2417 18 1 8.0058 -0.0635 3.7170 19 1 8.9879 0.8930 5.7173 20 1 8.2862 2.3382 3.9007 21 6 9.8259 2.6197 0.2249 22 6 8.4450 2.5542 -0.4610 23 1 7.8035 3.3646 -0.1147 24 6 8.5902 2.5945 -1.9836 25 6 3.5794 -1.2057 -0.0055 26 9 4.2521 -2.3774 -0.0114 27 6 2.1951 -1.1996 0.0005 28 17 1.3217 -2.6999 0.0002 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6512 2.1337 -0.0004 33 1 4.1086 2.1491 0.0009 34 1 5.9400 2.0158 0.0018 35 1 7.8120 1.6531 2.1308 36 1 8.5182 0.0511 1.7611 37 1 11.3585 -0.1570 4.9785 38 1 10.6020 2.3076 -0.4739 39 1 10.0209 3.6353 0.5694 40 1 7.6163 2.4332 -2.4458 41 1 8.9794 3.5667 -2.2860 42 1 9.2783 1.8121 -2.3037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080184425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:21 Heat of formation + Delta-G solvation = -33.451183 kcal Electronic energy + Delta-G solvation = -27358.693072 eV Core-core repulsion = 23279.862932 eV Total energy + Delta-G solvation = -4078.830140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.09497 -40.40499 -39.19276 -37.79826 -36.87381 -34.29242 -33.35150 -32.61513 -31.03551 -30.92616 -28.76178 -27.39671 -26.18029 -23.86957 -23.31603 -22.70391 -21.18265 -20.56294 -19.95965 -18.20521 -17.30019 -17.12802 -16.86773 -16.13450 -15.98128 -15.74512 -15.22970 -14.84486 -14.47789 -14.36473 -14.27254 -13.92696 -13.79983 -13.39442 -13.15122 -13.02630 -12.87060 -12.66737 -12.44040 -12.26926 -12.05745 -12.00128 -11.85393 -11.80075 -11.31010 -11.28406 -11.16394 -10.70777 -10.46728 -10.30615 -10.00333 -9.92018 -9.45379 -9.29319 -9.13768 -8.88237 -8.62328 -7.04932 -5.93296 -3.23994 0.20322 0.53466 1.56976 2.47947 3.01458 3.33122 3.40794 3.47970 3.51092 3.61933 4.12500 4.19791 4.43068 4.51282 4.57622 4.75356 4.88048 4.91828 4.99682 5.08342 5.12997 5.19782 5.30726 5.39112 5.49673 5.50025 5.60761 5.68307 5.70443 5.74436 5.84260 5.94086 6.09097 6.13804 6.23216 6.35236 6.51701 6.63140 6.73212 6.76957 7.47789 7.69966 8.19302 8.32514 8.83516 9.69983 10.16882 11.22700 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.003241 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.148827 B = 8637.734686 C = 9427.930889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.026 4.026 3 C -0.129 4.129 4 C -0.049 4.049 5 C -0.163 4.163 6 C 0.554 3.446 7 O -0.512 6.512 8 N -0.710 5.710 9 C 0.135 3.865 10 H 0.103 0.897 11 C 0.105 3.895 12 N -0.607 5.607 13 C -0.244 4.244 14 H 0.094 0.906 15 C 0.025 3.975 16 N -0.906 5.906 17 Si 0.879 3.121 18 H -0.284 1.284 19 H -0.302 1.302 20 H -0.278 1.278 21 C 0.141 3.859 22 C -0.110 4.110 23 H 0.078 0.922 24 C -0.138 4.138 25 C 0.175 3.825 26 F -0.099 7.099 27 C -0.092 4.092 28 Cl -0.041 7.041 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.396 0.604 35 H 0.027 0.973 36 H 0.065 0.935 37 H 0.264 0.736 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.012 4.646 -12.704 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.027 4.027 3 C -0.147 4.147 4 C -0.068 4.068 5 C -0.168 4.168 6 C 0.340 3.660 7 O -0.388 6.388 8 N -0.362 5.362 9 C 0.030 3.970 10 H 0.121 0.879 11 C -0.022 4.022 12 N -0.334 5.334 13 C -0.370 4.370 14 H 0.112 0.888 15 C -0.174 4.174 16 N -0.549 5.549 17 Si 0.710 3.290 18 H -0.210 1.210 19 H -0.229 1.229 20 H -0.204 1.204 21 C 0.015 3.985 22 C -0.130 4.130 23 H 0.096 0.904 24 C -0.196 4.196 25 C 0.154 3.846 26 F -0.076 7.076 27 C -0.119 4.119 28 Cl -0.012 7.012 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.231 0.769 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.429 3.586 -12.497 27.674 hybrid contribution -1.111 0.153 0.721 1.333 sum -25.540 3.739 -11.777 28.372 Atomic orbital electron populations 1.20982 0.89186 1.04251 1.03624 1.19857 0.97320 0.90484 0.95017 1.20998 0.93661 0.97633 1.02457 1.21333 0.94364 0.96819 0.94289 1.20101 0.94635 0.92571 1.09469 1.17839 0.85953 0.84614 0.77611 1.90898 1.69058 1.30813 1.48012 1.45799 1.07688 1.07706 1.75020 1.22391 0.77192 0.98508 0.98881 0.87950 1.22272 0.87716 0.98692 0.93515 1.44708 1.09857 1.46917 1.31888 1.18619 0.86603 1.37665 0.94147 0.88828 1.24981 0.96786 0.98879 0.96766 1.69844 1.32979 1.35855 1.16225 0.87011 0.85939 0.78314 0.77770 1.21046 1.22940 1.20379 1.21464 0.93239 0.94041 0.89742 1.22459 0.98581 0.96039 0.95914 0.90380 1.21748 1.01527 1.02074 0.94249 1.17362 0.87706 0.81934 0.97641 1.91662 1.79796 1.43920 1.92263 1.20768 0.90280 0.89308 1.11578 1.98385 1.75331 1.30571 1.96912 0.89762 0.90284 0.90226 0.83641 0.83859 0.76875 0.95571 0.91710 0.92657 0.94277 0.94712 0.92925 0.92381 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.60 36.00 0.35 -0.28 16 2 C -0.03 -0.20 5.89 -104.52 -0.62 -0.82 16 3 C -0.13 -0.86 9.67 -39.64 -0.38 -1.25 16 4 C -0.05 -0.41 9.54 -39.19 -0.37 -0.79 16 5 C -0.16 -2.08 5.88 -104.92 -0.62 -2.70 16 6 C 0.55 8.97 7.77 -12.40 -0.10 8.88 16 7 O -0.51 -10.70 15.09 5.30 0.08 -10.62 16 8 N -0.71 -10.07 5.18 -52.72 -0.27 -10.34 16 9 C 0.14 2.35 2.76 -65.78 -0.18 2.17 16 10 H 0.10 1.94 7.64 -51.93 -0.40 1.55 16 11 C 0.10 2.37 4.38 -2.53 -0.01 2.36 16 12 N -0.61 -14.86 3.22 -169.86 -0.55 -15.41 16 13 C -0.24 -7.04 10.58 -15.06 -0.16 -7.20 16 14 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 15 C 0.02 0.74 5.43 -17.43 -0.09 0.65 16 16 N -0.91 -28.67 13.97 55.49 0.78 -27.89 16 17 Si 0.88 23.48 24.27 -169.99 -4.13 19.35 16 18 H -0.28 -7.62 6.48 56.52 0.37 -7.25 16 19 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 20 H -0.28 -7.15 6.65 56.52 0.38 -6.78 16 21 C 0.14 2.67 6.86 -2.92 -0.02 2.65 16 22 C -0.11 -1.61 3.16 -88.78 -0.28 -1.89 16 23 H 0.08 0.99 8.00 -51.93 -0.42 0.58 16 24 C -0.14 -1.61 9.17 37.16 0.34 -1.26 16 25 C 0.18 2.38 7.26 -38.93 -0.28 2.10 16 26 F -0.10 -1.63 15.12 2.25 0.03 -1.60 16 27 C -0.09 -0.99 6.31 -39.49 -0.25 -1.24 16 28 Cl -0.04 -0.42 26.93 -51.86 -1.40 -1.82 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.44 6.88 -51.93 -0.36 0.08 16 31 H 0.08 0.27 8.08 -51.93 -0.42 -0.15 16 32 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.14 0.79 6.40 -52.48 -0.34 0.45 16 34 H 0.40 4.01 6.55 -40.82 -0.27 3.75 16 35 H 0.03 0.62 5.57 -51.93 -0.29 0.33 16 36 H 0.06 1.70 6.63 -51.93 -0.34 1.35 16 37 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 38 H 0.04 0.73 7.78 -51.93 -0.40 0.33 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -36.03 356.87 -8.13 -44.16 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.38 Total: -2.60 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.68 Total: 1.38 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.04 Total: -53.64 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.03 Total: -1.60 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.13 Total: 19.35 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.40 Total: -1.82 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.03 -8.13 -44.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080184425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.713 kcal (2) G-P(sol) polarization free energy of solvation -36.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds