Wall clock time and date at job start Sat Apr 11 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38453 * 119.83549 * 2 1 4 4 C 1.37854 * 120.23033 * 179.97438 * 3 2 1 5 5 C 1.39673 * 119.90414 * 0.02562 * 4 3 2 6 6 C 1.47697 * 120.16183 * 179.97438 * 5 4 3 7 7 O 1.21570 * 119.99677 * 180.02562 * 6 5 4 8 8 N 1.34768 * 119.99721 * 0.02562 * 6 5 4 9 9 C 1.46501 * 119.99654 * 179.97438 * 8 6 5 10 10 H 1.08995 * 110.91693 * 37.45172 * 9 8 6 11 11 C 1.54908 * 111.00655 * 273.54684 * 9 8 6 12 12 N 1.47426 * 104.92948 * 204.86061 * 11 9 8 13 13 C 1.36940 * 125.64782 * 204.15046 * 12 11 9 14 14 H 1.07998 * 120.00050 * 161.52040 * 13 12 11 15 15 C 1.38813 * 119.99845 * 341.52923 * 13 12 11 16 16 N 1.31625 * 119.99502 * 157.60351 * 15 13 12 17 17 Si 1.86792 * 120.00162 * 337.60447 * 15 13 12 18 18 H 1.48498 * 109.47196 * 84.54220 * 17 15 13 19 19 H 1.48510 * 109.47106 * 204.53762 * 17 15 13 20 20 H 1.48492 * 109.47267 * 324.53766 * 17 15 13 21 21 C 1.47283 * 108.55833 * 24.15781 * 12 11 9 22 22 C 1.54326 * 107.30758 * 358.92209 * 21 12 11 23 23 H 1.09001 * 110.71993 * 96.18105 * 22 21 12 24 24 C 1.53002 * 110.87198 * 219.38268 * 22 21 12 25 25 C 1.39794 * 119.67402 * 0.26039 * 5 4 3 26 26 F 1.35105 * 120.11273 * 179.71498 * 25 5 4 27 27 C 1.38294 * 119.84122 * 179.97438 * 2 1 3 28 28 Cl 1.73604 * 119.95095 * 0.03999 * 27 2 1 29 29 H 1.08999 * 109.47221 * 89.99785 * 1 2 3 30 30 H 1.09002 * 109.47071 * 209.99726 * 1 2 3 31 31 H 1.09002 * 109.46822 * 329.99844 * 1 2 3 32 32 H 1.08002 * 119.88616 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.04760 * 180.02562 * 4 3 2 34 34 H 0.96998 * 120.00823 * 0.02562 * 8 6 5 35 35 H 1.09001 * 110.37003 * 323.75413 * 11 9 8 36 36 H 1.09001 * 110.36869 * 85.97128 * 11 9 8 37 37 H 0.97002 * 119.99552 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.85734 * 239.50139 * 21 12 11 39 39 H 1.09005 * 109.87758 * 118.35699 * 21 12 11 40 40 H 1.09000 * 109.46733 * 173.60874 * 24 22 21 41 41 H 1.09003 * 109.47391 * 293.60974 * 24 22 21 42 42 H 1.09001 * 109.46602 * 53.60992 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2010 0.0000 4 6 3.5743 1.2105 0.0005 5 6 4.2790 0.0046 0.0005 6 6 5.7559 0.0081 0.0005 7 8 6.3662 -1.0433 0.0001 8 7 6.4269 1.1769 0.0011 9 6 7.8919 1.1804 0.0016 10 1 8.2832 0.3732 -0.6175 11 6 8.4469 1.0919 1.4452 12 7 9.7882 1.6996 1.3743 13 6 10.8242 1.4493 2.2342 14 1 11.8358 1.6952 1.9469 15 6 10.5740 0.8795 3.4750 16 7 11.5331 0.2408 4.1112 17 14 8.8765 1.0190 4.2417 18 1 8.0058 -0.0635 3.7170 19 1 8.9879 0.8930 5.7173 20 1 8.2862 2.3382 3.9007 21 6 9.8259 2.6197 0.2249 22 6 8.4450 2.5542 -0.4610 23 1 7.8035 3.3646 -0.1147 24 6 8.5902 2.5945 -1.9836 25 6 3.5794 -1.2057 -0.0055 26 9 4.2521 -2.3774 -0.0114 27 6 2.1951 -1.1996 0.0005 28 17 1.3217 -2.6999 0.0002 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6512 2.1337 -0.0004 33 1 4.1086 2.1491 0.0009 34 1 5.9400 2.0158 0.0018 35 1 7.8120 1.6531 2.1308 36 1 8.5182 0.0511 1.7611 37 1 11.3585 -0.1570 4.9785 38 1 10.6020 2.3076 -0.4739 39 1 10.0209 3.6353 0.5694 40 1 7.6163 2.4332 -2.4458 41 1 8.9794 3.5667 -2.2860 42 1 9.2783 1.8121 -2.3037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080184425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:20 Heat of formation + Delta-G solvation = -59.056578 kcal Electronic energy + Delta-G solvation = -27359.803406 eV Core-core repulsion = 23279.862932 eV Total energy + Delta-G solvation = -4079.940473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.14074 -41.50642 -40.20655 -39.21698 -37.65878 -35.86017 -34.63858 -33.78638 -32.83399 -31.66677 -30.03031 -28.45395 -27.76104 -25.32585 -24.01916 -23.83993 -22.72077 -21.86083 -21.25314 -19.24318 -18.99833 -18.24360 -18.03796 -17.34808 -17.21806 -17.05545 -16.60275 -15.98641 -15.80839 -15.47548 -15.29964 -15.18899 -14.86101 -14.70942 -14.60444 -14.35941 -14.06604 -13.62719 -13.54098 -13.26978 -13.26310 -13.14633 -12.97512 -12.83550 -12.67611 -12.54815 -12.30714 -12.16770 -12.07508 -11.87265 -11.62614 -11.52861 -11.17897 -10.91002 -10.31201 -9.95672 -9.88150 -9.12211 -8.25371 -5.51031 -0.58657 -0.20186 0.81075 1.24969 1.25431 1.36113 1.53930 1.84972 2.34808 2.40114 2.82311 2.96323 3.24357 3.37443 3.47757 3.60519 3.70624 3.78196 3.89121 3.97221 4.18911 4.23210 4.41322 4.45164 4.54454 4.68132 4.70964 4.73020 4.78882 4.83664 4.92235 4.94627 5.00315 5.08650 5.15936 5.19645 5.20673 5.32400 5.49331 5.52710 5.62410 6.04091 6.36429 6.68322 7.05122 7.46930 8.02894 8.94427 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.003241 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.148827 B = 8637.734686 C = 9427.930889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.015 4.015 3 C -0.109 4.109 4 C -0.035 4.035 5 C -0.186 4.186 6 C 0.550 3.450 7 O -0.574 6.574 8 N -0.691 5.691 9 C 0.148 3.852 10 H 0.079 0.921 11 C 0.102 3.898 12 N -0.626 5.626 13 C -0.232 4.232 14 H 0.068 0.932 15 C -0.037 4.037 16 N -0.953 5.953 17 Si 0.941 3.059 18 H -0.295 1.295 19 H -0.303 1.303 20 H -0.254 1.254 21 C 0.131 3.869 22 C -0.089 4.089 23 H 0.114 0.886 24 C -0.132 4.132 25 C 0.136 3.864 26 F -0.131 7.131 27 C -0.103 4.103 28 Cl -0.046 7.046 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.195 0.805 33 H 0.180 0.820 34 H 0.420 0.580 35 H 0.031 0.969 36 H 0.015 0.985 37 H 0.262 0.738 38 H 0.038 0.962 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.294 8.846 -14.331 33.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.016 4.016 3 C -0.127 4.127 4 C -0.054 4.054 5 C -0.190 4.190 6 C 0.338 3.662 7 O -0.454 6.454 8 N -0.344 5.344 9 C 0.042 3.958 10 H 0.097 0.903 11 C -0.024 4.024 12 N -0.353 5.353 13 C -0.361 4.361 14 H 0.085 0.915 15 C -0.231 4.231 16 N -0.600 5.600 17 Si 0.770 3.230 18 H -0.223 1.223 19 H -0.231 1.231 20 H -0.178 1.178 21 C 0.007 3.993 22 C -0.108 4.108 23 H 0.132 0.868 24 C -0.190 4.190 25 C 0.115 3.885 26 F -0.109 7.109 27 C -0.131 4.131 28 Cl -0.017 7.017 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.213 0.787 33 H 0.197 0.803 34 H 0.260 0.740 35 H 0.049 0.951 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -28.769 7.869 -14.169 33.021 hybrid contribution 0.184 -1.138 1.136 1.618 sum -28.585 6.731 -13.033 32.129 Atomic orbital electron populations 1.21120 0.86828 1.05312 1.04864 1.20377 0.98964 0.89734 0.92554 1.21563 0.92945 0.98828 0.99374 1.21763 0.95307 0.96147 0.92138 1.19937 0.92376 0.94138 1.12599 1.18470 0.87600 0.84015 0.76081 1.90869 1.70654 1.33064 1.50797 1.45510 1.06222 1.08505 1.74194 1.21988 0.79077 0.99943 0.94793 0.90252 1.22255 0.87358 0.95627 0.97163 1.44814 1.09501 1.48698 1.32314 1.18631 0.87095 1.35767 0.94597 0.91466 1.25611 1.00200 0.99556 0.97759 1.69965 1.35209 1.38049 1.16796 0.86029 0.81724 0.78776 0.76467 1.22303 1.23100 1.17827 1.21769 0.96357 0.93250 0.87967 1.22438 0.95809 0.94803 0.97728 0.86763 1.21729 1.02734 1.03008 0.91507 1.17863 0.89010 0.81423 1.00251 1.91569 1.80669 1.45745 1.92962 1.20960 0.89330 0.90387 1.12401 1.98377 1.75042 1.31305 1.96988 0.88211 0.91059 0.87397 0.78748 0.80271 0.73963 0.95149 0.96614 0.92902 0.94406 0.93419 0.90610 0.89901 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.71 9.60 71.24 0.68 -0.03 16 2 C -0.02 -0.18 5.89 -19.80 -0.12 -0.30 16 3 C -0.11 -0.82 9.67 22.23 0.22 -0.61 16 4 C -0.04 -0.42 9.54 22.53 0.21 -0.21 16 5 C -0.19 -4.50 5.88 -20.06 -0.12 -4.62 16 6 C 0.55 17.75 7.77 86.74 0.67 18.43 16 7 O -0.57 -25.43 15.09 -3.93 -0.06 -25.49 16 8 N -0.69 -18.02 5.18 -438.98 -2.27 -20.29 16 9 C 0.15 4.99 2.76 46.38 0.13 5.12 16 10 H 0.08 3.08 7.64 -2.39 -0.02 3.06 16 11 C 0.10 4.67 4.38 86.85 0.38 5.05 16 12 N -0.63 -30.86 3.22 -691.30 -2.22 -33.08 16 13 C -0.23 -13.86 10.58 84.03 0.89 -12.98 16 14 H 0.07 4.26 8.06 -2.91 -0.02 4.24 16 15 C -0.04 -2.27 5.43 84.86 0.46 -1.81 16 16 N -0.95 -63.08 13.97 21.65 0.30 -62.77 16 17 Si 0.94 50.04 24.27 68.60 1.66 51.71 16 18 H -0.30 -16.15 6.48 99.48 0.65 -15.50 16 19 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 20 H -0.25 -12.33 6.65 99.48 0.66 -11.67 16 21 C 0.13 4.74 6.86 86.68 0.59 5.34 16 22 C -0.09 -2.27 3.16 -9.60 -0.03 -2.30 16 23 H 0.11 2.19 8.00 -2.39 -0.02 2.17 16 24 C -0.13 -2.52 9.17 71.98 0.66 -1.86 16 25 C 0.14 3.74 7.26 22.69 0.16 3.91 16 26 F -0.13 -4.70 15.12 44.97 0.68 -4.02 16 27 C -0.10 -2.11 6.31 22.33 0.14 -1.96 16 28 Cl -0.05 -0.93 26.93 -2.72 -0.07 -1.01 16 29 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.57 6.88 -2.39 -0.02 0.55 16 31 H 0.11 0.06 8.08 -2.39 -0.02 0.05 16 32 H 0.20 -0.32 8.06 -2.91 -0.02 -0.34 16 33 H 0.18 0.76 6.40 -2.91 -0.02 0.75 16 34 H 0.42 6.49 6.55 -92.71 -0.61 5.88 16 35 H 0.03 1.38 5.57 -2.39 -0.01 1.36 16 36 H 0.02 0.86 6.63 -2.39 -0.02 0.84 16 37 H 0.26 16.52 8.31 -92.71 -0.77 15.75 16 38 H 0.04 1.38 7.78 -2.39 -0.02 1.36 16 39 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.04 1.02 8.07 -2.39 -0.02 1.00 16 Total: -1.00 -88.61 356.87 3.31 -85.30 By element: Atomic # 1 Polarization: -1.86 SS G_CDS: 0.35 Total: -1.50 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 4.94 Total: 11.17 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -4.19 Total: -116.15 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.06 Total: -25.49 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.68 Total: -4.02 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 1.66 Total: 51.71 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.07 Total: -1.01 kcal Total: -88.61 3.31 -85.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080184425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.243 kcal (2) G-P(sol) polarization free energy of solvation -88.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds