Wall clock time and date at job start Sat Apr 11 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00458 * 2 1 4 4 H 1.48499 * 109.47091 * 270.00474 * 3 2 1 5 5 H 1.48503 * 109.46713 * 30.00370 * 3 2 1 6 6 H 1.48495 * 109.46936 * 150.00319 * 3 2 1 7 7 C 1.38819 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99336 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99919 * 359.97438 * 7 2 1 10 10 C 1.46876 * 125.36988 * 359.97323 * 9 7 2 11 11 C 1.54195 * 106.39468 * 197.86663 * 10 9 7 12 12 H 1.09000 * 109.65109 * 89.90721 * 11 10 9 13 13 O 1.40791 * 110.22760 * 210.33805 * 11 10 9 14 14 C 1.41320 * 118.40068 * 67.70042 * 13 11 10 15 15 C 1.51787 * 111.63531 * 56.76770 * 14 13 11 16 16 N 1.44958 * 111.99662 * 319.67081 * 15 14 13 17 17 C 1.34777 * 117.32252 * 203.53802 * 16 15 14 18 18 O 1.21281 * 120.00101 * 176.30961 * 17 16 15 19 19 C 1.50701 * 119.99997 * 356.58683 * 17 16 15 20 20 N 1.46500 * 109.47209 * 179.72255 * 19 17 16 21 21 C 1.35047 * 126.03516 * 124.99978 * 20 19 17 22 22 C 1.35375 * 107.72478 * 180.02562 * 21 20 19 23 23 Cl 1.73596 * 126.04659 * 180.02562 * 22 21 20 24 24 C 1.39933 * 107.90934 * 0.02562 * 22 21 20 25 25 N 1.30858 * 108.21192 * 359.71672 * 24 22 21 26 26 C 1.44546 * 125.35136 * 23.26014 * 16 15 14 27 27 H 1.08998 * 109.48662 * 106.14054 * 26 16 15 28 28 C 1.46794 * 125.35917 * 180.02562 * 9 7 2 29 29 H 0.97008 * 119.99460 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.06900 * 317.09874 * 10 9 7 31 31 H 1.08995 * 110.06632 * 78.63297 * 10 9 7 32 32 H 1.08998 * 109.06540 * 177.47263 * 14 13 11 33 33 H 1.09003 * 109.06867 * 296.48587 * 14 13 11 34 34 H 1.09000 * 109.07519 * 198.92735 * 15 14 13 35 35 H 1.09001 * 108.79939 * 80.23011 * 15 14 13 36 36 H 1.09003 * 109.46940 * 299.72193 * 19 17 16 37 37 H 1.08997 * 109.47057 * 59.72079 * 19 17 16 38 38 H 1.07992 * 126.13785 * 0.02562 * 21 20 19 39 39 H 1.07996 * 125.89358 * 180.02562 * 24 22 21 40 40 H 1.08994 * 109.82866 * 59.33480 * 28 9 7 41 41 H 1.09003 * 109.89728 * 298.40493 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3253 -2.3881 -0.0005 10 6 -0.1370 -2.5254 0.0006 11 6 -0.4384 -3.9680 0.4540 12 1 -0.5370 -3.9981 1.5391 13 8 -1.6326 -4.4242 -0.1358 14 6 -1.6547 -4.6341 -1.5332 15 6 -0.5780 -5.6109 -1.9695 16 7 0.6682 -5.3977 -1.2605 17 6 1.7992 -5.8275 -1.8543 18 8 2.8748 -5.6145 -1.3361 19 6 1.7276 -6.5672 -3.1653 20 7 3.0811 -6.9183 -3.6024 21 6 3.5201 -8.1578 -3.9102 22 6 4.8225 -8.0573 -4.2656 23 17 5.8525 -9.3671 -4.7524 24 6 5.1917 -6.7109 -4.1710 25 7 4.1472 -6.0269 -3.7792 26 6 0.7979 -4.7567 0.0286 27 1 1.0098 -5.5086 0.7888 28 6 1.9372 -3.7224 -0.0005 29 1 -0.4850 0.8402 0.0004 30 1 -0.5789 -1.8139 0.6982 31 1 -0.5290 -2.3589 -1.0028 32 1 -2.6307 -5.0264 -1.8189 33 1 -1.4918 -3.6823 -2.0389 34 1 -0.4025 -5.4934 -3.0388 35 1 -0.9261 -6.6260 -1.7779 36 1 1.1397 -7.4762 -3.0379 37 1 1.2568 -5.9321 -3.9156 38 1 2.9368 -9.0661 -3.8786 39 1 6.1686 -6.3054 -4.3890 40 1 2.5666 -3.8405 0.8814 41 1 2.5350 -3.8564 -0.9021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083206669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:31 Heat of formation + Delta-G solvation = 64.596631 kcal Electronic energy + Delta-G solvation = -28147.136670 eV Core-core repulsion = 24092.478164 eV Total energy + Delta-G solvation = -4054.658506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.56985 -40.76519 -38.49745 -36.58767 -36.01627 -35.01993 -33.55942 -32.34947 -30.25966 -30.10992 -28.53164 -27.90696 -26.67576 -24.63070 -23.43413 -22.11899 -21.38908 -20.83137 -19.99096 -18.69570 -17.71291 -17.63757 -16.98189 -16.69552 -16.02455 -15.48010 -15.22212 -14.93731 -14.74766 -14.63049 -14.32975 -14.01953 -13.82994 -13.64958 -13.40664 -13.06509 -12.89638 -12.41034 -12.23040 -12.01128 -11.86821 -11.52951 -11.48957 -11.13959 -10.90144 -10.79832 -10.62415 -10.50423 -10.45489 -10.10766 -9.89467 -9.76986 -9.42138 -9.06838 -8.62712 -8.57117 -8.39456 -6.81666 -5.68842 -3.06846 1.50122 1.72335 2.48517 2.49007 2.55061 2.91287 3.41203 3.46210 3.48543 3.96324 4.08633 4.31375 4.44168 4.49828 4.65227 4.69941 4.79280 4.94674 5.02862 5.17445 5.26345 5.34677 5.42041 5.52801 5.55333 5.66117 5.75543 5.83628 6.03564 6.16243 6.20379 6.41288 6.51809 6.78090 7.07982 7.24781 7.32218 7.40805 7.58364 7.69336 7.82538 8.12332 8.30141 9.21496 9.81632 10.43574 11.38176 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013475 B = 0.003235 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.469248 B = 8652.843383 C =10228.951964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.219 4.219 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.141 3.859 11 C 0.068 3.932 12 H 0.114 0.886 13 O -0.369 6.369 14 C 0.058 3.942 15 C 0.072 3.928 16 N -0.585 5.585 17 C 0.491 3.509 18 O -0.491 6.491 19 C 0.117 3.883 20 N -0.353 5.353 21 C 0.070 3.930 22 C -0.184 4.184 23 Cl -0.048 7.048 24 C 0.058 3.942 25 N -0.243 5.243 26 C 0.113 3.887 27 H 0.071 0.929 28 C 0.124 3.876 29 H 0.252 0.748 30 H 0.099 0.901 31 H 0.021 0.979 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.182 0.818 39 H 0.191 0.809 40 H 0.032 0.968 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -19.671 -8.941 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.015 3.985 11 C 0.009 3.991 12 H 0.132 0.868 13 O -0.286 6.286 14 C -0.020 4.020 15 C -0.051 4.051 16 N -0.320 5.320 17 C 0.276 3.724 18 O -0.364 6.364 19 C -0.008 4.008 20 N -0.135 5.135 21 C -0.077 4.077 22 C -0.223 4.223 23 Cl -0.020 7.020 24 C -0.130 4.130 25 N -0.062 5.062 26 C 0.009 3.991 27 H 0.089 0.911 28 C -0.002 4.002 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.039 0.961 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.199 0.801 39 H 0.208 0.792 40 H 0.050 0.950 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.983 -18.263 -8.201 20.044 hybrid contribution 0.970 -0.086 -0.530 1.109 sum -0.014 -18.349 -8.731 20.321 Atomic orbital electron populations 1.69861 1.04847 1.24883 1.57800 1.24789 0.95767 0.97718 1.02382 0.86058 0.78602 0.83218 0.77580 1.21650 1.21649 1.20608 1.19084 0.90585 0.82170 1.42931 0.90330 1.44261 1.01248 1.00223 1.87321 1.22051 0.85418 0.90611 1.00407 1.23101 0.81880 0.96202 0.97959 0.86791 1.86866 1.34686 1.86386 1.20613 1.22173 0.97925 0.98293 0.83561 1.21711 0.85978 1.00708 0.96730 1.46664 1.06178 1.58705 1.20497 1.20391 0.84718 0.80930 0.86355 1.90786 1.27925 1.53570 1.64106 1.21686 0.79557 1.02871 0.96663 1.47886 1.09669 1.04762 1.51186 1.22162 0.94920 0.90026 1.00589 1.20725 0.92573 0.90516 1.18506 1.98317 1.66319 1.46617 1.90705 1.23956 0.99163 0.90457 0.99470 1.77778 0.93689 1.15525 1.19230 1.21620 0.98965 0.95441 0.83041 0.91113 1.21798 0.93255 0.84071 1.01077 0.93751 0.88311 0.96100 0.87686 0.92139 0.90153 0.91346 0.85541 0.86440 0.80055 0.79234 0.94999 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.07 10.18 55.49 0.56 -26.50 16 2 C -0.01 -0.32 5.48 -17.43 -0.10 -0.42 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.30 10.25 -15.06 -0.15 -6.46 16 8 H 0.08 2.24 7.83 -52.49 -0.41 1.82 16 9 N -0.60 -15.78 3.39 -171.41 -0.58 -16.36 16 10 C 0.14 3.38 5.26 -3.21 -0.02 3.36 16 11 C 0.07 1.27 3.91 -26.27 -0.10 1.17 16 12 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 13 O -0.37 -6.09 10.25 -34.36 -0.35 -6.44 16 14 C 0.06 0.74 6.73 36.54 0.25 0.98 16 15 C 0.07 0.76 5.86 -5.48 -0.03 0.73 16 16 N -0.58 -8.67 3.09 -169.11 -0.52 -9.19 16 17 C 0.49 7.40 7.08 -10.99 -0.08 7.32 16 18 O -0.49 -9.60 12.73 5.56 0.07 -9.53 16 19 C 0.12 1.17 5.57 -5.19 -0.03 1.14 16 20 N -0.35 -4.35 3.40 -62.51 -0.21 -4.56 16 21 C 0.07 0.69 11.43 -17.16 -0.20 0.50 16 22 C -0.18 -2.04 6.65 -39.97 -0.27 -2.31 16 23 Cl -0.05 -0.46 29.30 -51.86 -1.52 -1.98 16 24 C 0.06 0.73 12.02 -17.33 -0.21 0.52 16 25 N -0.24 -3.74 11.65 30.64 0.36 -3.38 16 26 C 0.11 2.05 3.34 -68.66 -0.23 1.82 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 28 C 0.12 2.80 6.06 -3.41 -0.02 2.78 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.10 2.69 6.25 -51.93 -0.32 2.36 16 31 H 0.02 0.54 6.47 -51.93 -0.34 0.21 16 32 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.91 6.73 -51.93 -0.35 0.56 16 34 H 0.08 0.63 6.32 -51.93 -0.33 0.30 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.13 0.68 8.02 -51.93 -0.42 0.26 16 37 H 0.12 0.99 7.10 -51.93 -0.37 0.62 16 38 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.19 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.55 5.18 -51.93 -0.27 1.28 16 LS Contribution 343.56 15.07 5.18 5.18 Total: -1.00 -36.11 343.56 -8.12 -44.23 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.90 Total: -0.13 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -1.18 Total: 11.13 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.39 Total: -60.00 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.28 Total: -15.97 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.52 Total: -1.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.11 -8.12 -44.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083206669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.827 kcal (2) G-P(sol) polarization free energy of solvation -36.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds