Wall clock time and date at job start Sat Apr 11 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38163 * 120.08273 * 2 1 4 4 F 1.35099 * 119.93312 * 359.97408 * 3 2 1 5 5 C 1.38584 * 120.13282 * 179.97438 * 3 2 1 6 6 C 1.38281 * 120.28974 * 359.97438 * 5 3 2 7 7 C 1.38109 * 120.15912 * 359.78384 * 6 5 3 8 8 Cl 1.73606 * 120.06667 * 180.23362 * 7 6 5 9 9 C 1.39569 * 120.08337 * 179.97438 * 2 1 3 10 10 C 1.47780 * 120.14435 * 359.97438 * 9 2 1 11 11 O 1.21561 * 119.99925 * 89.99696 * 10 9 2 12 12 N 1.34780 * 120.00143 * 270.00493 * 10 9 2 13 13 C 1.46494 * 119.99636 * 359.97438 * 12 10 9 14 14 C 1.46499 * 119.99951 * 179.97438 * 12 10 9 15 15 C 1.53004 * 109.47084 * 95.75499 * 14 12 10 16 16 H 1.08999 * 112.96181 * 65.77094 * 15 14 12 17 17 C 1.53950 * 113.77011 * 294.09334 * 15 14 12 18 18 C 1.53943 * 86.28833 * 222.09033 * 17 15 14 19 19 N 1.47571 * 113.77075 * 197.59610 * 15 14 12 20 20 C 1.36941 * 134.49314 * 318.94734 * 19 15 14 21 21 H 1.08002 * 120.00236 * 5.27448 * 20 19 15 22 22 C 1.38811 * 120.00144 * 185.27906 * 20 19 15 23 23 N 1.31627 * 120.00060 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00111 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46922 * 90.00282 * 24 22 20 26 26 H 1.48498 * 109.47141 * 210.00120 * 24 22 20 27 27 H 1.48495 * 109.47346 * 330.00483 * 24 22 20 28 28 H 1.09005 * 109.46969 * 270.02114 * 1 2 3 29 29 H 1.08997 * 109.47421 * 30.02050 * 1 2 3 30 30 H 1.08999 * 109.47292 * 150.02525 * 1 2 3 31 31 H 1.07994 * 119.85199 * 180.02562 * 5 3 2 32 32 H 1.08005 * 119.91979 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46807 * 265.34350 * 13 12 10 34 34 H 1.08992 * 109.47746 * 25.34894 * 13 12 10 35 35 H 1.09006 * 109.47010 * 145.35453 * 13 12 10 36 36 H 1.09002 * 109.46970 * 335.75610 * 14 12 10 37 37 H 1.08997 * 109.47020 * 215.76066 * 14 12 10 38 38 H 1.08991 * 113.74215 * 336.43557 * 17 15 14 39 39 H 1.09002 * 113.73883 * 107.63851 * 17 15 14 40 40 H 1.08998 * 113.77224 * 137.90611 * 18 17 15 41 41 H 1.09005 * 113.76840 * 269.19560 * 18 17 15 42 42 H 0.96997 * 119.99727 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1955 0.0000 4 9 1.5243 2.3657 -0.0005 5 6 3.5853 1.1967 0.0005 6 6 4.2838 0.0033 0.0016 7 6 3.6037 -1.1987 0.0067 8 17 4.4831 -2.6956 0.0141 9 6 2.2066 -1.2077 0.0005 10 6 1.4728 -2.4904 0.0017 11 8 1.1705 -3.0187 -1.0506 12 7 1.1385 -3.0746 1.1694 13 6 1.5031 -2.4381 2.4375 14 6 0.4105 -4.3459 1.1705 15 6 1.4027 -5.5016 1.3153 16 1 1.9108 -5.5075 2.2797 17 6 2.3514 -5.6593 0.1132 18 6 2.1138 -7.1739 0.2520 19 7 0.8502 -6.8126 0.9234 20 6 -0.3522 -7.4414 1.1082 21 1 -1.1701 -6.9154 1.5781 22 6 -0.5198 -8.7549 0.6917 23 7 0.4771 -9.3962 0.1196 24 14 -2.1598 -9.6128 0.9445 25 1 -3.0241 -9.3879 -0.2420 26 1 -1.9340 -11.0695 1.1233 27 1 -2.8251 -9.0629 2.1528 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 4.1221 2.1339 0.0010 32 1 5.3639 0.0112 0.0024 33 1 2.4466 -2.8519 2.7936 34 1 1.6111 -1.3640 2.2872 35 1 0.7229 -2.6251 3.1754 36 1 -0.1367 -4.4520 0.2338 37 1 -0.2907 -4.3623 2.0048 38 1 1.9607 -5.2369 -0.8125 39 1 3.3769 -5.3534 0.3204 40 1 1.9747 -7.6859 -0.7001 41 1 2.8318 -7.6734 0.9026 42 1 0.3600 -10.3142 -0.1711 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085681886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:36 Heat of formation + Delta-G solvation = 1.546459 kcal Electronic energy + Delta-G solvation = -27840.783470 eV Core-core repulsion = 23763.470941 eV Total energy + Delta-G solvation = -4077.312529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.32590 -40.62493 -38.79583 -37.51801 -36.70214 -35.24697 -33.34215 -32.10433 -31.07378 -28.58319 -27.75720 -27.58456 -26.46089 -24.18780 -23.20437 -22.36837 -22.04767 -19.77201 -18.91514 -17.87110 -17.42634 -16.71684 -16.59571 -16.53964 -16.03389 -15.90703 -15.27824 -14.68341 -14.25935 -14.04763 -13.82230 -13.80308 -13.66920 -13.43213 -13.22081 -13.10197 -12.75606 -12.59609 -12.29692 -12.27196 -11.95305 -11.89198 -11.40468 -11.35479 -11.15132 -10.97731 -10.84998 -10.65967 -10.37120 -9.95325 -9.77930 -9.62212 -9.43282 -9.33389 -8.90532 -8.73511 -8.37946 -6.79293 -5.70079 -3.01850 0.43522 0.56766 1.80355 2.55334 2.81666 3.05822 3.42913 3.47014 3.49247 3.77764 4.11992 4.22986 4.39737 4.52289 4.65883 4.93353 5.02585 5.10395 5.24750 5.27009 5.29654 5.37990 5.49863 5.54175 5.55279 5.63521 5.66124 5.72436 5.74872 5.92330 5.99709 6.13924 6.22546 6.42469 6.57532 6.70531 6.81376 6.86992 7.34140 7.42328 7.59129 7.67727 8.05500 8.19693 9.11024 9.77878 10.69220 11.47509 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.003204 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.835646 B = 8737.382476 C = 9621.834306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C 0.100 3.900 4 F -0.131 7.131 5 C -0.127 4.127 6 C -0.089 4.089 7 C -0.018 4.018 8 Cl -0.035 7.035 9 C -0.079 4.079 10 C 0.563 3.437 11 O -0.509 6.509 12 N -0.595 5.595 13 C 0.076 3.924 14 C 0.115 3.885 15 C 0.129 3.871 16 H 0.041 0.959 17 C -0.155 4.155 18 C 0.164 3.836 19 N -0.599 5.599 20 C -0.223 4.223 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.909 3.091 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.024 0.976 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.733 24.196 3.211 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.079 4.079 3 C 0.080 3.920 4 F -0.109 7.109 5 C -0.146 4.146 6 C -0.107 4.107 7 C -0.046 4.046 8 Cl -0.006 7.006 9 C -0.083 4.083 10 C 0.348 3.652 11 O -0.384 6.384 12 N -0.328 5.328 13 C -0.067 4.067 14 C -0.007 4.007 15 C 0.021 3.979 16 H 0.058 0.942 17 C -0.193 4.193 18 C 0.039 3.961 19 N -0.326 5.326 20 C -0.350 4.350 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.370 23.497 2.641 24.767 hybrid contribution -0.710 -0.474 0.411 0.948 sum 6.660 23.023 3.052 24.160 Atomic orbital electron populations 1.20858 0.88904 1.04529 1.03602 1.19856 0.97524 0.90064 1.00466 1.17353 0.89939 0.80871 1.03832 1.91516 1.80268 1.45318 1.93799 1.21183 0.92008 0.99610 1.01828 1.20857 1.01003 0.89350 0.99524 1.20991 0.90976 0.89189 1.03459 1.98449 1.75026 1.30666 1.96422 1.19659 0.92029 0.94189 1.02436 1.17844 0.79359 0.83539 0.84485 1.90868 1.53129 1.63696 1.30672 1.47722 1.56603 1.23174 1.05274 1.21817 1.01493 0.97517 0.85868 1.21921 0.94368 0.80708 1.03734 1.22488 0.92570 0.87025 0.95807 0.94157 1.23799 0.96804 0.99760 0.98927 1.22105 0.85993 0.91140 0.96848 1.45956 1.10247 1.13397 1.62966 1.18975 0.87377 0.94387 1.34296 0.90424 1.24788 0.97637 0.96438 1.01499 1.69845 1.30251 1.11319 1.45185 0.86173 0.83159 0.78940 0.77787 1.21569 1.21736 1.20755 0.89916 0.90229 0.90024 0.83426 0.83314 0.92180 0.91593 0.90682 0.88704 0.91121 0.89730 0.94068 0.91640 0.95774 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.44 36.00 0.34 -0.87 16 2 C -0.08 -0.83 5.50 -104.16 -0.57 -1.40 16 3 C 0.10 0.93 7.23 -39.48 -0.29 0.64 16 4 F -0.13 -1.23 16.47 2.25 0.04 -1.19 16 5 C -0.13 -0.95 10.02 -39.44 -0.40 -1.34 16 6 C -0.09 -0.72 9.81 -39.61 -0.39 -1.11 16 7 C -0.02 -0.21 6.35 -39.07 -0.25 -0.45 16 8 Cl -0.03 -0.44 27.79 -51.86 -1.44 -1.88 16 9 C -0.08 -0.98 3.85 -104.95 -0.40 -1.39 16 10 C 0.56 8.68 4.23 -12.36 -0.05 8.62 16 11 O -0.51 -9.95 15.08 5.31 0.08 -9.87 16 12 N -0.60 -8.58 2.80 -182.72 -0.51 -9.09 16 13 C 0.08 0.80 10.38 59.84 0.62 1.42 16 14 C 0.12 2.06 5.44 -4.04 -0.02 2.03 16 15 C 0.13 2.67 4.57 -66.86 -0.31 2.37 16 16 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.15 -3.24 7.28 -25.80 -0.19 -3.43 16 18 C 0.16 4.12 7.39 -2.98 -0.02 4.10 16 19 N -0.60 -15.62 3.57 -170.75 -0.61 -16.23 16 20 C -0.22 -6.27 10.51 -15.06 -0.16 -6.43 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 23 N -0.92 -27.97 11.53 55.49 0.64 -27.33 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.69 7.64 -51.93 -0.40 0.29 16 30 H 0.08 0.96 7.08 -51.93 -0.37 0.59 16 31 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.15 0.84 8.06 -52.48 -0.42 0.41 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.59 6.38 -51.93 -0.33 0.26 16 35 H 0.07 0.68 8.01 -51.93 -0.42 0.27 16 36 H 0.09 1.97 7.26 -51.93 -0.38 1.59 16 37 H 0.07 1.16 8.01 -51.93 -0.42 0.75 16 38 H 0.08 1.91 6.64 -51.93 -0.34 1.57 16 39 H 0.04 0.78 7.90 -51.93 -0.41 0.37 16 40 H 0.07 1.81 7.41 -51.93 -0.38 1.42 16 41 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -33.42 366.76 -9.01 -42.42 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.53 Total: -2.28 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.18 Total: 2.47 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.48 Total: -52.65 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.87 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.44 Total: -1.88 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.42 -9.01 -42.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085681886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.970 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds