Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37826 * 119.92141 * 2 1 4 4 C 1.39653 * 119.89196 * 180.02562 * 3 2 1 5 5 C 1.47645 * 120.13070 * 180.02562 * 4 3 2 6 6 O 1.21582 * 120.00102 * 220.10109 * 5 4 3 7 7 N 1.34780 * 120.00268 * 40.10338 * 5 4 3 8 8 C 1.46504 * 119.99501 * 5.35967 * 7 5 4 9 9 C 1.46495 * 120.00305 * 185.36186 * 7 5 4 10 10 C 1.52997 * 109.47362 * 84.03788 * 9 7 5 11 11 H 1.08993 * 112.96579 * 315.91053 * 10 9 7 12 12 C 1.53948 * 113.76932 * 184.23079 * 10 9 7 13 13 C 1.53944 * 86.28869 * 222.09355 * 12 10 9 14 14 N 1.47583 * 113.76914 * 87.58925 * 10 9 7 15 15 C 1.36941 * 134.48834 * 318.92871 * 14 10 9 16 16 H 1.07995 * 120.00532 * 330.75883 * 15 14 10 17 17 C 1.38818 * 119.99613 * 150.75493 * 15 14 10 18 18 N 1.31620 * 119.99673 * 166.84594 * 17 15 14 19 19 Si 1.86797 * 119.99982 * 346.85611 * 17 15 14 20 20 H 1.48497 * 109.47395 * 89.98978 * 19 17 15 21 21 H 1.48503 * 109.47133 * 209.98933 * 19 17 15 22 22 H 1.48499 * 109.47154 * 329.98530 * 19 17 15 23 23 C 1.39813 * 119.74087 * 0.26886 * 4 3 2 24 24 Cl 1.73604 * 120.07991 * 179.72404 * 23 4 3 25 25 C 1.37990 * 119.84037 * 359.43093 * 23 4 3 26 26 C 1.38612 * 120.10330 * 0.57394 * 25 23 4 27 27 F 1.35100 * 119.86230 * 179.69867 * 26 25 23 28 28 H 1.08999 * 109.47268 * 89.99525 * 1 2 3 29 29 H 1.09000 * 109.47165 * 210.00312 * 1 2 3 30 30 H 1.09004 * 109.47178 * 329.99955 * 1 2 3 31 31 H 1.08002 * 120.05134 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46770 * 269.24995 * 8 7 5 33 33 H 1.08992 * 109.47109 * 29.25249 * 8 7 5 34 34 H 1.08993 * 109.46640 * 149.25517 * 8 7 5 35 35 H 1.09005 * 109.47107 * 324.03941 * 9 7 5 36 36 H 1.09002 * 109.47167 * 204.04175 * 9 7 5 37 37 H 1.09003 * 113.74330 * 336.43729 * 12 10 9 38 38 H 1.09002 * 113.74118 * 107.64212 * 12 10 9 39 39 H 1.08996 * 113.77203 * 137.91149 * 13 12 10 40 40 H 1.09001 * 113.77068 * 269.19237 * 13 12 10 41 41 H 0.96999 * 119.99555 * 179.97438 * 18 17 15 42 42 H 1.08000 * 119.94734 * 180.27318 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1945 0.0000 4 6 3.5910 1.1938 -0.0005 5 6 4.3328 2.4704 0.0000 6 8 5.3344 2.5918 -0.6785 7 7 3.8998 3.5012 0.7528 8 6 2.7633 3.3194 1.6592 9 6 4.5655 4.8031 0.6645 10 6 3.9936 5.5894 -0.5168 11 1 3.8772 4.9829 -1.4149 12 6 4.6968 6.9363 -0.7645 13 6 3.2892 7.5145 -0.9973 14 7 2.7984 6.3863 -0.1782 15 6 1.6844 6.1673 0.5875 16 1 1.3024 5.1648 0.7110 17 6 1.0461 7.2342 1.2050 18 7 -0.1546 7.0740 1.7200 19 14 1.8909 8.8972 1.3048 20 1 1.5412 9.7028 0.1074 21 1 1.4412 9.6083 2.5284 22 1 3.3621 8.7026 1.3580 23 6 4.2840 -0.0205 -0.0068 24 17 6.0200 -0.0316 -0.0147 25 6 3.5848 -1.2101 -0.0005 26 6 2.1987 -1.2018 0.0000 27 9 1.5190 -2.3694 0.0000 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6540 2.1296 0.0004 32 1 1.8389 3.5654 1.1367 33 1 2.7271 2.2826 1.9931 34 1 2.8784 3.9753 2.5221 35 1 5.6355 4.6550 0.5184 36 1 4.3984 5.3599 1.5866 37 1 5.1965 7.3390 0.1166 38 1 5.3289 6.9446 -1.6525 39 1 3.1343 8.4914 -0.5394 40 1 2.9649 7.4761 -2.0372 41 1 -0.6004 7.8194 2.1519 42 1 4.1183 -2.1491 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085947359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -5.052555 kcal Electronic energy + Delta-G solvation = -27837.873732 eV Core-core repulsion = 23760.275049 eV Total energy + Delta-G solvation = -4077.598683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.13001 -41.60639 -40.10975 -39.22566 -37.66266 -36.43471 -34.37437 -33.79721 -32.52101 -30.55030 -29.53111 -28.05231 -27.55678 -25.37438 -24.96461 -24.16443 -22.98055 -20.89683 -20.38109 -19.04065 -18.90584 -18.38551 -18.00551 -17.36390 -17.15743 -16.85692 -16.52208 -15.87694 -15.61043 -15.43859 -15.22369 -15.08381 -14.87900 -14.51307 -14.44087 -14.26460 -14.11765 -13.91701 -13.67004 -13.31560 -13.06066 -13.00203 -12.91739 -12.77254 -12.62926 -12.37882 -12.17112 -12.11813 -12.07228 -11.93049 -11.52888 -11.29446 -10.91932 -10.67848 -10.14148 -9.76471 -9.60158 -8.85688 -8.08775 -5.42954 -0.53822 -0.16004 0.89108 1.35242 1.43219 1.52677 1.53674 1.95267 2.28530 2.49698 2.96223 2.97394 3.24655 3.30862 3.47254 3.60091 3.81967 3.91890 4.11002 4.18424 4.24611 4.36774 4.44152 4.50980 4.56617 4.57860 4.64920 4.65733 4.72520 4.73434 4.80534 4.81759 4.92810 4.98894 5.01021 5.09751 5.10513 5.39616 5.50341 5.54969 5.67188 6.26032 6.36600 6.64776 7.05032 7.55519 8.42579 9.10887 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.003776 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.486890 B = 7414.222837 C = 8899.973574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.113 4.113 3 C -0.049 4.049 4 C -0.138 4.138 5 C 0.553 3.447 6 O -0.550 6.550 7 N -0.594 5.594 8 C 0.085 3.915 9 C 0.125 3.875 10 C 0.135 3.865 11 H 0.047 0.953 12 C -0.127 4.127 13 C 0.088 3.912 14 N -0.638 5.638 15 C -0.207 4.207 16 H 0.077 0.923 17 C -0.028 4.028 18 N -0.957 5.957 19 Si 0.938 3.062 20 H -0.292 1.292 21 H -0.314 1.314 22 H -0.252 1.252 23 C 0.019 3.981 24 Cl -0.040 7.040 25 C -0.142 4.142 26 C 0.131 3.869 27 F -0.124 7.124 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.035 0.965 40 H 0.051 0.949 41 H 0.258 0.742 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.354 -15.928 -2.010 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.114 4.114 3 C -0.068 4.068 4 C -0.142 4.142 5 C 0.342 3.658 6 O -0.429 6.429 7 N -0.325 5.325 8 C -0.057 4.057 9 C 0.002 3.998 10 C 0.029 3.971 11 H 0.065 0.935 12 C -0.165 4.165 13 C -0.036 4.036 14 N -0.367 5.367 15 C -0.335 4.335 16 H 0.095 0.905 17 C -0.222 4.222 18 N -0.604 5.604 19 Si 0.769 3.231 20 H -0.220 1.220 21 H -0.243 1.243 22 H -0.176 1.176 23 C -0.009 4.009 24 Cl -0.010 7.010 25 C -0.161 4.161 26 C 0.111 3.889 27 F -0.102 7.102 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.168 0.832 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.715 -15.857 -2.129 17.762 hybrid contribution -0.261 1.006 0.112 1.045 sum 7.454 -14.851 -2.017 16.739 Atomic orbital electron populations 1.20871 0.87655 1.04736 1.04179 1.20153 0.98831 0.90757 1.01654 1.21345 0.91364 0.99122 0.94950 1.19815 0.94322 0.92539 1.07559 1.18272 0.83992 0.83642 0.79928 1.90774 1.25870 1.83310 1.42942 1.47715 1.33083 1.10438 1.41250 1.22102 0.88104 1.02245 0.93266 1.21778 0.96894 0.81740 0.99438 1.22747 0.85570 0.93443 0.95380 0.93546 1.23462 0.95397 0.94987 1.02684 1.23033 0.93379 0.92403 0.94834 1.46566 1.21077 1.16391 1.52666 1.18699 1.00340 0.94902 1.19591 0.90546 1.25640 0.97012 1.01035 0.98541 1.69864 1.14020 1.32630 1.43906 0.85930 0.80334 0.81508 0.75315 1.21986 1.24347 1.17605 1.20628 0.86174 0.92935 1.01154 1.98411 1.07501 1.98790 1.96335 1.21040 0.92304 0.98726 1.04073 1.17467 0.89163 0.81296 1.00969 1.91533 1.79683 1.45570 1.93399 0.89414 0.89715 0.89859 0.83248 0.92430 0.89851 0.90995 0.89258 0.89876 0.89344 0.88916 0.94742 0.93114 0.93260 0.80877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.83 71.24 0.70 -1.26 16 2 C -0.11 -2.31 5.88 -19.86 -0.12 -2.43 16 3 C -0.05 -1.19 7.40 22.51 0.17 -1.02 16 4 C -0.14 -3.78 5.00 -20.07 -0.10 -3.88 16 5 C 0.55 17.94 6.94 86.73 0.60 18.54 16 6 O -0.55 -20.26 14.94 -3.97 -0.06 -20.32 16 7 N -0.59 -19.12 2.89 -850.43 -2.46 -21.57 16 8 C 0.09 2.55 8.25 127.77 1.05 3.60 16 9 C 0.12 4.15 5.30 86.38 0.46 4.61 16 10 C 0.13 4.91 4.49 45.09 0.20 5.11 16 11 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 12 C -0.13 -4.03 7.86 31.25 0.25 -3.78 16 13 C 0.09 3.43 7.56 86.44 0.65 4.08 16 14 N -0.64 -28.09 3.15 -690.89 -2.18 -30.27 16 15 C -0.21 -10.62 10.50 84.03 0.88 -9.74 16 16 H 0.08 4.06 5.46 -2.91 -0.02 4.05 16 17 C -0.03 -1.51 5.50 84.86 0.47 -1.05 16 18 N -0.96 -56.53 13.97 21.65 0.30 -56.22 16 19 Si 0.94 44.87 24.89 68.60 1.71 46.58 16 20 H -0.29 -13.96 7.09 99.48 0.71 -13.26 16 21 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 22 H -0.25 -11.16 6.69 99.48 0.67 -10.49 16 23 C 0.02 0.47 6.33 22.59 0.14 0.61 16 24 Cl -0.04 -1.01 26.82 -2.72 -0.07 -1.09 16 25 C -0.14 -2.78 9.79 22.30 0.22 -2.56 16 26 C 0.13 2.57 7.25 22.46 0.16 2.73 16 27 F -0.12 -2.31 16.46 44.97 0.74 -1.57 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.22 7.63 -2.39 -0.02 1.20 16 30 H 0.08 1.40 8.08 -2.38 -0.02 1.38 16 31 H 0.15 3.84 5.90 -2.91 -0.02 3.82 16 32 H 0.06 1.94 4.69 -2.39 -0.01 1.93 16 33 H 0.08 2.06 6.22 -2.39 -0.01 2.04 16 34 H 0.07 2.25 7.87 -2.39 -0.02 2.23 16 35 H 0.09 2.78 7.54 -2.38 -0.02 2.76 16 36 H 0.08 2.86 7.83 -2.39 -0.02 2.84 16 37 H 0.09 2.69 8.10 -2.39 -0.02 2.67 16 38 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.03 1.43 3.94 -2.39 -0.01 1.42 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -63.91 354.09 4.75 -59.17 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.03 Total: 11.73 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 5.74 Total: 13.56 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -4.33 Total: -108.06 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.06 Total: -20.32 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.74 Total: -1.57 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.71 Total: 46.58 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.07 Total: -1.09 kcal Total: -63.91 4.75 -59.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085947359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.115 kcal (2) G-P(sol) polarization free energy of solvation -63.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds