Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38453 * 119.83975 * 2 1 4 4 C 1.37851 * 120.23351 * 180.25560 * 3 2 1 5 5 C 1.39677 * 119.89888 * 359.74067 * 4 3 2 6 6 C 1.47698 * 120.15668 * 179.97438 * 5 4 3 7 7 O 1.21574 * 119.99632 * 180.02562 * 6 5 4 8 8 N 1.34778 * 120.00206 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99738 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46806 * 180.02562 * 9 8 6 11 11 H 1.09002 * 112.84907 * 314.66678 * 10 9 8 12 12 C 1.53782 * 113.61632 * 85.86125 * 10 9 8 13 13 C 1.53950 * 87.01843 * 139.95089 * 12 10 9 14 14 H 1.09006 * 113.61411 * 89.19833 * 13 12 10 15 15 N 1.46500 * 113.67093 * 220.06681 * 13 12 10 16 16 C 1.36935 * 120.00288 * 252.56308 * 15 13 12 17 17 H 1.07999 * 119.99954 * 0.02562 * 16 15 13 18 18 C 1.38814 * 120.00021 * 179.97438 * 16 15 13 19 19 N 1.31614 * 120.00039 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99857 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46826 * 60.00675 * 20 18 16 22 22 H 1.48504 * 109.47168 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47541 * 300.00704 * 20 18 16 24 24 C 1.53772 * 113.61426 * 183.46988 * 10 9 8 25 25 C 1.39792 * 119.67803 * 0.02562 * 5 4 3 26 26 F 1.35101 * 120.11355 * 180.02562 * 25 5 4 27 27 C 1.38300 * 119.83486 * 179.73835 * 2 1 3 28 28 Cl 1.73599 * 119.95669 * 0.02787 * 27 2 1 29 29 H 1.08998 * 109.47049 * 270.25773 * 1 2 3 30 30 H 1.09000 * 109.47075 * 30.25805 * 1 2 3 31 31 H 1.09002 * 109.47120 * 150.25738 * 1 2 3 32 32 H 1.08005 * 119.88369 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.05035 * 179.76289 * 4 3 2 34 34 H 0.97005 * 119.99817 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.47034 * 299.99711 * 9 8 6 36 36 H 1.08996 * 109.47385 * 60.00589 * 9 8 6 37 37 H 1.09002 * 113.61530 * 254.53174 * 12 10 9 38 38 H 1.09002 * 113.61159 * 25.42993 * 12 10 9 39 39 H 0.97003 * 119.99684 * 72.55717 * 15 13 12 40 40 H 0.97001 * 120.00014 * 179.97438 * 19 18 16 41 41 H 1.08999 * 113.61614 * 334.56628 * 24 10 9 42 42 H 1.08999 * 113.61626 * 105.38309 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2010 0.0000 4 6 3.5744 1.2105 -0.0053 5 6 4.2789 0.0044 -0.0052 6 6 5.7559 0.0079 -0.0115 7 8 6.3662 -1.0435 -0.0119 8 7 6.4270 1.1767 -0.0168 9 6 7.8920 1.1801 -0.0224 10 6 8.3986 2.6238 -0.0270 11 1 7.8697 3.2557 -0.7406 12 6 8.5120 3.2414 1.3768 13 6 9.8248 3.8880 0.8985 14 1 9.6872 4.8668 0.4388 15 7 10.8872 3.8775 1.9071 16 6 11.2472 5.0402 2.5346 17 1 10.7476 5.9649 2.2862 18 6 12.2535 5.0301 3.4907 19 7 12.8621 3.9031 3.7937 20 14 12.7451 6.6163 4.3461 21 1 11.5721 7.1745 5.0658 22 1 13.8351 6.3386 5.3157 23 1 13.2190 7.5968 3.3367 24 6 9.9293 2.7392 -0.1184 25 6 3.5794 -1.2059 -0.0003 26 9 4.2520 -2.3776 0.0003 27 6 2.1950 -1.1997 0.0055 28 17 1.3216 -2.6999 0.0116 29 1 -0.3633 0.0046 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8923 -0.5098 32 1 1.6514 2.1337 -0.0004 33 1 4.1087 2.1490 -0.0092 34 1 5.9400 2.0156 -0.0161 35 1 8.2599 0.6692 0.8674 36 1 8.2531 0.6651 -0.9126 37 1 7.7258 3.9621 1.6016 38 1 8.6511 2.5046 2.1679 39 1 11.3356 3.0469 2.1305 40 1 13.5655 3.8961 4.4615 41 1 10.4566 1.8650 0.2633 42 1 10.2857 3.0536 -1.0993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086157771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = -35.330535 kcal Electronic energy + Delta-G solvation = -25830.474083 eV Core-core repulsion = 21751.562448 eV Total energy + Delta-G solvation = -4078.911635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.22848 -40.48396 -39.23986 -38.37674 -36.98435 -34.83732 -33.59068 -33.12951 -31.05621 -30.31585 -28.63504 -26.91602 -25.12790 -23.98950 -23.42441 -22.96665 -21.14186 -20.87717 -19.20793 -18.36736 -17.40632 -17.21808 -17.04230 -16.28992 -15.89099 -15.80214 -15.28965 -14.98404 -14.77418 -14.65003 -14.36490 -14.08199 -13.85635 -13.55757 -13.36496 -12.96718 -12.94679 -12.74485 -12.52184 -12.15336 -11.99098 -11.89713 -11.82236 -11.44144 -11.39772 -11.25569 -10.84480 -10.56921 -10.33593 -10.19746 -9.98445 -9.86190 -9.53044 -9.41453 -9.25192 -9.07197 -8.88446 -6.98480 -5.79725 -3.08875 0.09293 0.43349 1.47464 2.35071 2.89877 3.18702 3.41755 3.46188 3.47547 3.50899 4.03203 4.10174 4.33163 4.42246 4.56519 4.74293 4.83588 4.92591 4.97319 5.02237 5.16140 5.22394 5.29749 5.41845 5.44332 5.46090 5.51966 5.65614 5.77854 5.80731 5.89472 6.03636 6.06587 6.18262 6.27240 6.32014 6.38543 6.55362 6.78829 7.08103 7.29174 7.66576 7.99872 8.38683 9.49608 10.07849 10.41882 11.42481 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.001854 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.833461 B =15098.944442 C =15539.243721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.024 4.024 3 C -0.129 4.129 4 C -0.048 4.048 5 C -0.166 4.166 6 C 0.554 3.446 7 O -0.523 6.523 8 N -0.716 5.716 9 C 0.132 3.868 10 C -0.128 4.128 11 H 0.088 0.912 12 C -0.162 4.162 13 C 0.166 3.834 14 H 0.075 0.925 15 N -0.712 5.712 16 C -0.246 4.246 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.142 4.142 25 C 0.174 3.826 26 F -0.100 7.100 27 C -0.092 4.092 28 Cl -0.041 7.041 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.399 0.601 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.081 0.919 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.098 -7.058 -11.290 31.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.025 4.025 3 C -0.147 4.147 4 C -0.067 4.067 5 C -0.170 4.170 6 C 0.340 3.660 7 O -0.399 6.399 8 N -0.368 5.368 9 C 0.009 3.991 10 C -0.147 4.147 11 H 0.107 0.893 12 C -0.203 4.203 13 C 0.054 3.946 14 H 0.093 0.907 15 N -0.350 5.350 16 C -0.377 4.377 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.182 4.182 25 C 0.153 3.847 26 F -0.078 7.078 27 C -0.120 4.120 28 Cl -0.012 7.012 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.234 0.766 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.581 -7.820 -11.194 30.776 hybrid contribution 0.249 0.604 0.637 0.913 sum -27.332 -7.215 -10.557 30.175 Atomic orbital electron populations 1.20995 0.89135 1.04256 1.03760 1.19883 0.97384 0.90486 0.94756 1.21027 0.93712 0.97699 1.02239 1.21350 0.94391 0.96843 0.94108 1.20062 0.94576 0.92547 1.09853 1.17853 0.86038 0.84518 0.77583 1.90871 1.69241 1.30990 1.48830 1.45905 1.08303 1.07783 1.74778 1.21512 0.77532 0.97537 1.02491 1.22651 0.97963 0.94158 0.99933 0.89332 1.23992 1.01369 1.00330 0.94609 1.21540 0.88271 0.95219 0.89560 0.90669 1.42406 1.40083 1.08939 1.43591 1.19249 1.14723 0.87992 1.15727 0.91153 1.24780 0.99115 0.97022 1.00006 1.69648 1.27562 1.24807 1.35924 0.86261 0.77843 0.82817 0.79202 1.21248 1.21681 1.21237 1.23443 0.93057 1.01183 1.00486 1.17346 0.87701 0.81865 0.97803 1.91650 1.79813 1.44007 1.92330 1.20776 0.90302 0.89345 1.11568 1.98388 1.75343 1.30516 1.96904 0.89659 0.90164 0.90277 0.83550 0.83758 0.76569 0.90881 0.91424 0.92755 0.90303 0.78043 0.93368 0.90053 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.50 9.60 36.01 0.35 -0.16 16 2 C -0.02 -0.16 5.89 -104.52 -0.62 -0.77 16 3 C -0.13 -0.69 9.68 -39.64 -0.38 -1.07 16 4 C -0.05 -0.32 9.54 -39.19 -0.37 -0.70 16 5 C -0.17 -1.75 5.88 -104.92 -0.62 -2.36 16 6 C 0.55 7.30 7.77 -12.40 -0.10 7.21 16 7 O -0.52 -9.12 15.34 5.30 0.08 -9.03 16 8 N -0.72 -7.81 5.51 -61.29 -0.34 -8.15 16 9 C 0.13 1.67 5.50 -4.04 -0.02 1.65 16 10 C -0.13 -1.61 3.75 -89.81 -0.34 -1.94 16 11 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 12 C -0.16 -2.55 7.45 -25.83 -0.19 -2.74 16 13 C 0.17 3.11 4.48 -67.03 -0.30 2.81 16 14 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 15 N -0.71 -17.51 5.40 -52.55 -0.28 -17.80 16 16 C -0.25 -6.72 9.97 -15.06 -0.15 -6.87 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 20 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 C -0.14 -2.18 7.40 -25.93 -0.19 -2.37 16 25 C 0.17 2.01 7.26 -38.93 -0.28 1.73 16 26 F -0.10 -1.43 15.12 2.25 0.03 -1.39 16 27 C -0.09 -0.84 6.31 -39.49 -0.25 -1.09 16 28 Cl -0.04 -0.36 26.93 -51.86 -1.40 -1.75 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.18 8.08 -51.93 -0.42 -0.24 16 31 H 0.08 0.34 6.88 -51.93 -0.36 -0.02 16 32 H 0.15 0.35 8.06 -52.48 -0.42 -0.07 16 33 H 0.14 0.58 6.40 -52.49 -0.34 0.24 16 34 H 0.40 3.10 6.51 -40.82 -0.27 2.84 16 35 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.40 7.92 -51.93 -0.41 0.98 16 39 H 0.39 10.14 7.92 -40.82 -0.32 9.82 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -33.53 370.86 -9.62 -43.15 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.44 Total: 6.71 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -3.56 Total: -7.14 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.10 Total: -53.24 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.03 Total: -1.39 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.40 Total: -1.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.53 -9.62 -43.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086157771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.817 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds