Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00100 * 2 1 4 4 H 1.48494 * 109.47211 * 270.00223 * 3 2 1 5 5 H 1.48494 * 109.46764 * 30.00511 * 3 2 1 6 6 H 1.48499 * 109.46887 * 150.00477 * 3 2 1 7 7 C 1.38812 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00269 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00323 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01721 * 34.93730 * 10 9 7 12 12 C 1.53872 * 110.03050 * 273.54733 * 10 9 7 13 13 C 1.54266 * 106.59640 * 240.66305 * 12 10 9 14 14 C 1.54887 * 104.19888 * 336.38805 * 13 12 10 15 15 H 1.09000 * 110.75698 * 279.63123 * 14 13 12 16 16 C 1.53001 * 110.75563 * 156.25362 * 14 13 12 17 17 N 1.46503 * 109.47012 * 66.46010 * 16 14 13 18 18 C 1.34775 * 119.99907 * 179.97438 * 17 16 14 19 19 O 1.21574 * 120.00109 * 359.97438 * 18 17 16 20 20 C 1.47696 * 119.99706 * 179.97438 * 18 17 16 21 21 C 1.39652 * 120.16087 * 359.72461 * 20 18 17 22 22 C 1.37975 * 119.86288 * 179.74436 * 21 20 18 23 23 Cl 1.73591 * 119.90280 * 180.23381 * 22 21 20 24 24 C 1.38561 * 120.18612 * 0.51207 * 22 21 20 25 25 C 1.38190 * 120.33336 * 359.76262 * 24 22 21 26 26 C 1.38314 * 120.12929 * 359.97438 * 25 24 22 27 27 F 1.35103 * 120.09891 * 179.97438 * 26 25 24 28 28 C 1.54266 * 110.07573 * 156.35353 * 10 9 7 29 29 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99707 * 359.97438 * 9 7 2 31 31 H 1.09003 * 110.03622 * 121.37821 * 12 10 9 32 32 H 1.09003 * 110.07498 * 359.96668 * 12 10 9 33 33 H 1.09001 * 110.48620 * 95.07012 * 13 12 10 34 34 H 1.09004 * 110.48798 * 217.70845 * 13 12 10 35 35 H 1.09007 * 109.46629 * 186.45584 * 16 14 13 36 36 H 1.08990 * 109.47676 * 306.45515 * 16 14 13 37 37 H 0.97000 * 119.99886 * 359.97438 * 17 16 14 38 38 H 1.08002 * 120.06947 * 359.97438 * 21 20 18 39 39 H 1.08006 * 119.83494 * 179.74835 * 24 22 21 40 40 H 1.08000 * 119.93818 * 180.02562 * 25 24 22 41 41 H 1.09002 * 110.48438 * 261.59441 * 28 10 9 42 42 H 1.08998 * 110.48431 * 24.10269 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9716 -3.5602 0.5860 12 6 2.3989 -4.0685 -1.4434 13 6 1.7095 -5.4266 -1.6887 14 6 1.5296 -6.0230 -0.2706 15 1 2.4573 -6.4768 0.0781 16 6 0.3860 -7.0392 -0.2508 17 7 0.7500 -8.1999 -1.0673 18 6 -0.1102 -9.2294 -1.1964 19 8 -1.1880 -9.1950 -0.6350 20 6 0.2566 -10.3993 -2.0200 21 6 1.4915 -10.4397 -2.6709 22 6 1.8300 -11.5380 -3.4344 23 17 3.3672 -11.5919 -4.2391 24 6 0.9441 -12.5953 -3.5653 25 6 -0.2822 -12.5611 -2.9293 26 6 -0.6332 -11.4692 -2.1562 27 9 -1.8325 -11.4362 -1.5350 28 6 1.1732 -4.7790 0.5806 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 3.4781 -4.1717 -1.5572 32 1 2.0192 -3.3251 -2.1443 33 1 0.7409 -5.2818 -2.1673 34 1 2.3436 -6.0721 -2.2965 35 1 0.2025 -7.3596 0.7748 36 1 -0.5158 -6.5794 -0.6547 37 1 1.6102 -8.2275 -1.5149 38 1 2.1816 -9.6146 -2.5739 39 1 1.2133 -13.4504 -4.1677 40 1 -0.9677 -13.3889 -3.0354 41 1 1.4161 -4.9519 1.6291 42 1 0.1181 -4.5284 0.4707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086751034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -61.267400 kcal Electronic energy + Delta-G solvation = -26010.515919 eV Core-core repulsion = 21930.479577 eV Total energy + Delta-G solvation = -4080.036342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.29317 -40.49723 -39.04559 -38.07376 -36.94404 -35.08831 -33.47619 -32.22450 -30.84430 -30.63602 -29.01714 -27.32065 -25.18268 -24.05268 -23.18420 -22.90413 -21.04416 -20.10975 -19.19903 -18.66782 -17.63318 -17.22763 -17.08750 -16.25702 -16.13298 -15.96544 -15.43840 -15.12367 -14.92222 -14.76273 -14.06852 -13.92000 -13.85432 -13.67481 -13.41488 -13.22045 -13.11362 -12.60486 -12.27382 -12.14818 -11.77994 -11.63434 -11.58190 -11.31925 -10.83119 -10.78851 -10.63372 -10.56069 -10.36097 -10.21728 -10.12626 -9.91010 -9.83105 -9.63234 -9.28470 -9.13172 -8.88890 -6.94187 -5.76143 -3.04707 0.02893 0.35136 1.46662 2.29018 2.80139 3.10416 3.43303 3.48484 3.50255 3.56167 3.92814 4.02804 4.38663 4.48338 4.58877 4.77498 4.82741 4.87419 4.99448 5.04304 5.26211 5.31035 5.39685 5.47605 5.53677 5.64944 5.69272 5.85843 5.96266 5.97096 6.01535 6.05351 6.14646 6.25831 6.30468 6.44414 6.62073 6.69307 6.88526 7.13650 7.20219 7.71194 7.90563 8.43019 9.53650 10.12947 10.46752 11.46499 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.002033 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.004557 B =13769.042053 C =14932.677060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.723 5.723 10 C 0.175 3.825 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.115 4.115 14 C -0.106 4.106 15 H 0.079 0.921 16 C 0.127 3.873 17 N -0.717 5.717 18 C 0.555 3.445 19 O -0.520 6.520 20 C -0.158 4.158 21 C -0.049 4.049 22 C -0.057 4.057 23 Cl -0.053 7.053 24 C -0.057 4.057 25 C -0.151 4.151 26 C 0.165 3.835 27 F -0.107 7.107 28 C -0.118 4.118 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.063 0.937 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.455 -29.762 -8.022 31.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.065 3.935 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.153 4.153 14 C -0.125 4.125 15 H 0.098 0.902 16 C 0.005 3.995 17 N -0.369 5.369 18 C 0.340 3.660 19 O -0.396 6.396 20 C -0.162 4.162 21 C -0.069 4.069 22 C -0.084 4.084 23 Cl -0.024 7.024 24 C -0.076 4.076 25 C -0.170 4.170 26 C 0.144 3.856 27 F -0.085 7.085 28 C -0.157 4.157 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.234 0.766 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.082 0.918 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.877 -29.530 -7.611 30.741 hybrid contribution 0.582 0.953 -0.317 1.161 sum 4.459 -28.577 -7.928 29.990 Atomic orbital electron populations 1.69656 1.05094 1.25637 1.57726 1.24747 0.95507 0.97688 1.03110 0.86209 0.78652 0.83968 0.77483 1.21775 1.21805 1.20799 1.19248 0.90978 0.84208 1.42562 0.91243 1.42542 1.05702 0.99755 1.88351 1.20812 0.94124 0.86001 0.92580 0.93350 1.22993 0.98704 0.95727 1.01242 1.22399 1.00676 0.97146 0.95088 1.22368 0.97249 0.95153 0.97746 0.90233 1.21538 0.98425 0.84514 0.95058 1.45929 1.20094 1.19045 1.51840 1.17842 0.84659 0.82295 0.81186 1.90879 1.22098 1.79841 1.46821 1.20084 0.95650 0.96636 1.03845 1.21124 0.94894 0.97302 0.93550 1.20798 0.89943 0.96978 1.00710 1.98410 1.27474 1.98429 1.78114 1.21114 0.91638 0.97562 0.97242 1.21153 0.98211 0.98597 0.99065 1.17769 0.81474 0.93744 0.92567 1.91641 1.41171 1.96218 1.79504 1.22608 1.01307 0.93420 0.98350 0.93520 0.78234 0.93343 0.90900 0.91736 0.92975 0.91138 0.90768 0.76557 0.83495 0.83306 0.82878 0.91805 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.81 5.04 -52.34 -0.26 -18.07 16 10 C 0.18 3.33 3.55 -66.81 -0.24 3.10 16 11 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 12 C -0.15 -2.45 6.59 -25.61 -0.17 -2.62 16 13 C -0.12 -1.50 5.97 -25.07 -0.15 -1.65 16 14 C -0.11 -1.27 2.96 -88.63 -0.26 -1.53 16 15 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 16 C 0.13 1.51 5.11 -4.04 -0.02 1.49 16 17 N -0.72 -7.30 5.35 -61.30 -0.33 -7.63 16 18 C 0.55 6.76 7.77 -12.40 -0.10 6.66 16 19 O -0.52 -8.46 15.34 5.30 0.08 -8.38 16 20 C -0.16 -1.50 5.88 -104.91 -0.62 -2.11 16 21 C -0.05 -0.34 9.31 -39.15 -0.36 -0.71 16 22 C -0.06 -0.36 6.31 -39.56 -0.25 -0.61 16 23 Cl -0.05 -0.32 28.95 -51.86 -1.50 -1.83 16 24 C -0.06 -0.29 9.82 -39.48 -0.39 -0.68 16 25 C -0.15 -0.91 10.01 -39.57 -0.40 -1.31 16 26 C 0.17 1.55 7.28 -38.96 -0.28 1.27 16 27 F -0.11 -1.30 15.55 2.25 0.04 -1.26 16 28 C -0.12 -1.82 5.97 -25.07 -0.15 -1.97 16 29 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.38 10.10 7.54 -40.82 -0.31 9.80 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.43 7.92 -51.93 -0.41 1.02 16 33 H 0.06 0.90 8.01 -51.93 -0.42 0.49 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.40 2.98 6.36 -40.82 -0.26 2.72 16 38 H 0.15 0.75 6.41 -52.49 -0.34 0.41 16 39 H 0.15 0.39 8.06 -52.48 -0.42 -0.04 16 40 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.21 7.64 -51.93 -0.40 0.81 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -32.94 369.19 -9.82 -42.75 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.47 Total: 6.86 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -3.63 Total: -7.89 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.13 Total: -53.15 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.50 Total: -1.83 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.94 -9.82 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086751034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.514 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds