Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47059 * 240.00330 * 3 2 1 5 5 H 1.48491 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46900 * 120.00424 * 3 2 1 7 7 C 1.38812 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00269 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00323 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01721 * 34.93730 * 10 9 7 12 12 C 1.53872 * 110.03050 * 273.54733 * 10 9 7 13 13 C 1.54266 * 106.59640 * 240.66305 * 12 10 9 14 14 C 1.54887 * 104.19888 * 336.38805 * 13 12 10 15 15 H 1.09000 * 110.75698 * 279.63123 * 14 13 12 16 16 C 1.53001 * 110.75563 * 156.25362 * 14 13 12 17 17 N 1.46503 * 109.47012 * 66.46010 * 16 14 13 18 18 C 1.34775 * 119.99907 * 179.97438 * 17 16 14 19 19 O 1.21563 * 119.99770 * 359.97438 * 18 17 16 20 20 C 1.47779 * 119.99922 * 179.97438 * 18 17 16 21 21 C 1.39606 * 120.13962 * 359.72249 * 20 18 17 22 22 C 1.38130 * 119.83442 * 179.74760 * 21 20 18 23 23 F 1.35099 * 119.93263 * 180.23390 * 22 21 20 24 24 C 1.38626 * 120.12741 * 0.50706 * 22 21 20 25 25 C 1.38233 * 120.29511 * 359.77171 * 24 22 21 26 26 C 1.38164 * 120.15787 * 359.97146 * 25 24 22 27 27 Cl 1.73603 * 120.06628 * 179.97438 * 26 25 24 28 28 C 1.54266 * 110.07573 * 156.35353 * 10 9 7 29 29 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99707 * 359.97438 * 9 7 2 31 31 H 1.09003 * 110.03622 * 121.37821 * 12 10 9 32 32 H 1.09003 * 110.07498 * 359.96668 * 12 10 9 33 33 H 1.09001 * 110.48620 * 95.07012 * 13 12 10 34 34 H 1.09004 * 110.48798 * 217.70845 * 13 12 10 35 35 H 1.09007 * 109.46629 * 186.45584 * 16 14 13 36 36 H 1.08990 * 109.47676 * 306.45515 * 16 14 13 37 37 H 0.97000 * 119.99886 * 359.97438 * 17 16 14 38 38 H 1.07994 * 120.08621 * 359.97438 * 21 20 18 39 39 H 1.08005 * 119.84695 * 179.74190 * 24 22 21 40 40 H 1.07996 * 119.92435 * 179.97438 * 25 24 22 41 41 H 1.09002 * 110.48438 * 261.59441 * 28 10 9 42 42 H 1.08998 * 110.48431 * 24.10269 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9716 -3.5602 0.5860 12 6 2.3989 -4.0685 -1.4434 13 6 1.7095 -5.4266 -1.6887 14 6 1.5296 -6.0230 -0.2706 15 1 2.4573 -6.4768 0.0781 16 6 0.3860 -7.0392 -0.2508 17 7 0.7500 -8.1999 -1.0673 18 6 -0.1102 -9.2294 -1.1964 19 8 -1.1879 -9.1950 -0.6351 20 6 0.2568 -10.4000 -2.0204 21 6 1.4913 -10.4399 -2.6710 22 6 1.8300 -11.5395 -3.4354 23 9 3.0261 -11.5823 -4.0620 24 6 0.9426 -12.5966 -3.5653 25 6 -0.2835 -12.5601 -2.9281 26 6 -0.6325 -11.4685 -2.1563 27 17 -2.1733 -11.4248 -1.3577 28 6 1.1732 -4.7790 0.5806 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 3.4781 -4.1717 -1.5572 32 1 2.0192 -3.3251 -2.1443 33 1 0.7409 -5.2818 -2.1673 34 1 2.3436 -6.0721 -2.2965 35 1 0.2025 -7.3596 0.7748 36 1 -0.5158 -6.5794 -0.6547 37 1 1.6102 -8.2275 -1.5149 38 1 2.1814 -9.6149 -2.5740 39 1 1.2104 -13.4523 -4.1675 40 1 -0.9704 -13.3867 -3.0338 41 1 1.4161 -4.9519 1.6291 42 1 0.1181 -4.5284 0.4707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086812103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -53.166199 kcal Electronic energy + Delta-G solvation = -26011.510303 eV Core-core repulsion = 21931.825255 eV Total energy + Delta-G solvation = -4079.685047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.47641 -40.59003 -38.88632 -37.98697 -36.71481 -35.05589 -33.46308 -32.19422 -30.77556 -30.63611 -29.01331 -27.31890 -25.19208 -24.01403 -23.17483 -22.89384 -21.03484 -20.12026 -19.19410 -18.70717 -17.37257 -17.12096 -17.07873 -16.48148 -16.24773 -16.00516 -15.53785 -15.07434 -14.96568 -14.75560 -14.09403 -13.97771 -13.79731 -13.64094 -13.26428 -13.13410 -13.00874 -12.59096 -12.23374 -12.14258 -11.66857 -11.64723 -11.48832 -11.29509 -10.79446 -10.75005 -10.63182 -10.56053 -10.35051 -10.14253 -9.93493 -9.87380 -9.75506 -9.62240 -9.25642 -9.07265 -8.88264 -6.94024 -5.75801 -3.04393 0.04364 0.37456 1.72829 2.32409 2.82602 3.14479 3.43951 3.48470 3.49542 3.52948 3.94323 4.06456 4.40054 4.51845 4.59237 4.76866 4.87937 4.90139 4.99317 5.05136 5.21191 5.35033 5.41887 5.48865 5.54117 5.65814 5.70330 5.86506 5.97305 5.98798 6.02170 6.06037 6.15754 6.27732 6.30967 6.44846 6.62422 6.69784 6.88873 7.14092 7.23521 7.70927 7.94187 8.43393 9.53916 10.13230 10.47075 11.46773 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.002043 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.158280 B =13702.569491 C =14743.552034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.722 5.722 10 C 0.175 3.825 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.115 4.115 14 C -0.106 4.106 15 H 0.079 0.921 16 C 0.128 3.872 17 N -0.718 5.718 18 C 0.549 3.451 19 O -0.508 6.508 20 C -0.097 4.097 21 C -0.112 4.112 22 C 0.098 3.902 23 F -0.130 7.130 24 C -0.119 4.119 25 C -0.091 4.091 26 C 0.000 4.000 27 Cl -0.019 7.019 28 C -0.118 4.118 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.398 0.602 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.063 0.937 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 -29.637 -6.908 30.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.363 5.363 10 C 0.065 3.935 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.153 4.153 14 C -0.125 4.125 15 H 0.097 0.903 16 C 0.006 3.994 17 N -0.371 5.371 18 C 0.334 3.666 19 O -0.384 6.384 20 C -0.101 4.101 21 C -0.131 4.131 22 C 0.079 3.921 23 F -0.109 7.109 24 C -0.138 4.138 25 C -0.109 4.109 26 C -0.029 4.029 27 Cl 0.010 6.990 28 C -0.157 4.157 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.233 0.767 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.169 0.831 41 H 0.082 0.918 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.505 -29.398 -6.408 30.126 hybrid contribution 0.829 0.941 -0.427 1.325 sum 2.334 -28.457 -6.835 29.359 Atomic orbital electron populations 1.69645 1.05091 1.25757 1.57644 1.24744 0.95505 0.97677 1.03084 0.86285 0.78528 0.83665 0.77812 1.21316 1.21723 1.21304 1.19204 0.90948 0.84224 1.42702 0.91303 1.42533 1.05692 0.99743 1.88367 1.20812 0.94123 0.86011 0.92572 0.93373 1.22994 0.98695 0.95739 1.01250 1.22396 1.00659 0.97125 0.95110 1.22367 0.97288 0.95175 0.97700 0.90285 1.21517 0.98350 0.84516 0.95046 1.45966 1.20127 1.19097 1.51875 1.17924 0.84797 0.82367 0.81470 1.90906 1.21666 1.79527 1.46307 1.19694 0.94067 0.95781 1.00537 1.21291 0.96530 0.98381 0.96933 1.17540 0.82583 0.95803 0.96215 1.91562 1.42595 1.96583 1.80136 1.21316 0.93239 0.98663 1.00612 1.20962 0.96627 0.97534 0.95824 1.21097 0.89714 0.94840 0.97201 1.98446 1.24850 1.98128 1.77544 1.22605 1.01291 0.93431 0.98339 0.93467 0.78233 0.93369 0.90908 0.91734 0.93022 0.91159 0.90786 0.76663 0.83376 0.83240 0.83144 0.91826 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.59 9.96 -15.06 -0.15 -6.74 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.81 5.04 -52.34 -0.26 -18.08 16 10 C 0.18 3.34 3.55 -66.81 -0.24 3.10 16 11 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 12 C -0.15 -2.46 6.59 -25.61 -0.17 -2.63 16 13 C -0.12 -1.50 5.97 -25.07 -0.15 -1.65 16 14 C -0.11 -1.27 2.96 -88.63 -0.26 -1.53 16 15 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 16 C 0.13 1.49 5.11 -4.04 -0.02 1.47 16 17 N -0.72 -7.15 5.35 -61.27 -0.33 -7.47 16 18 C 0.55 6.36 7.77 -12.36 -0.10 6.27 16 19 O -0.51 -7.54 13.96 5.31 0.07 -7.46 16 20 C -0.10 -0.90 5.88 -104.95 -0.62 -1.52 16 21 C -0.11 -0.81 9.52 -39.11 -0.37 -1.18 16 22 C 0.10 0.68 7.29 -39.48 -0.29 0.39 16 23 F -0.13 -1.00 17.26 2.25 0.04 -0.96 16 24 C -0.12 -0.65 10.02 -39.44 -0.40 -1.04 16 25 C -0.09 -0.55 9.82 -39.61 -0.39 -0.94 16 26 C 0.00 0.00 6.35 -39.07 -0.25 -0.25 16 27 Cl -0.02 -0.20 26.02 -51.86 -1.35 -1.55 16 28 C -0.12 -1.81 5.97 -25.07 -0.15 -1.96 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.38 10.10 7.54 -40.82 -0.31 9.79 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.44 7.92 -51.93 -0.41 1.03 16 33 H 0.06 0.90 8.01 -51.93 -0.42 0.49 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 37 H 0.40 2.97 6.36 -40.82 -0.26 2.72 16 38 H 0.15 0.78 6.40 -52.49 -0.34 0.45 16 39 H 0.15 0.44 8.06 -52.48 -0.42 0.01 16 40 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.20 7.64 -51.93 -0.40 0.80 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -32.19 366.84 -9.71 -41.90 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.47 Total: 6.93 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -3.64 Total: -8.71 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.13 Total: -52.99 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.07 Total: -7.46 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.35 Total: -1.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.19 -9.71 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086812103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.268 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds