Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47059 * 240.00330 * 3 2 1 5 5 H 1.48491 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46900 * 120.00424 * 3 2 1 7 7 C 1.38812 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00269 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00323 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01721 * 34.93730 * 10 9 7 12 12 C 1.53872 * 110.03050 * 273.54733 * 10 9 7 13 13 C 1.54266 * 106.59640 * 240.66305 * 12 10 9 14 14 C 1.54887 * 104.19888 * 336.38805 * 13 12 10 15 15 H 1.09000 * 110.75698 * 279.63123 * 14 13 12 16 16 C 1.53001 * 110.75563 * 156.25362 * 14 13 12 17 17 N 1.46503 * 109.47012 * 66.46010 * 16 14 13 18 18 C 1.34775 * 119.99907 * 179.97438 * 17 16 14 19 19 O 1.21563 * 119.99770 * 359.97438 * 18 17 16 20 20 C 1.47779 * 119.99922 * 179.97438 * 18 17 16 21 21 C 1.39606 * 120.13962 * 359.72249 * 20 18 17 22 22 C 1.38130 * 119.83442 * 179.74760 * 21 20 18 23 23 F 1.35099 * 119.93263 * 180.23390 * 22 21 20 24 24 C 1.38626 * 120.12741 * 0.50706 * 22 21 20 25 25 C 1.38233 * 120.29511 * 359.77171 * 24 22 21 26 26 C 1.38164 * 120.15787 * 359.97146 * 25 24 22 27 27 Cl 1.73603 * 120.06628 * 179.97438 * 26 25 24 28 28 C 1.54266 * 110.07573 * 156.35353 * 10 9 7 29 29 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99707 * 359.97438 * 9 7 2 31 31 H 1.09003 * 110.03622 * 121.37821 * 12 10 9 32 32 H 1.09003 * 110.07498 * 359.96668 * 12 10 9 33 33 H 1.09001 * 110.48620 * 95.07012 * 13 12 10 34 34 H 1.09004 * 110.48798 * 217.70845 * 13 12 10 35 35 H 1.09007 * 109.46629 * 186.45584 * 16 14 13 36 36 H 1.08990 * 109.47676 * 306.45515 * 16 14 13 37 37 H 0.97000 * 119.99886 * 359.97438 * 17 16 14 38 38 H 1.07994 * 120.08621 * 359.97438 * 21 20 18 39 39 H 1.08005 * 119.84695 * 179.74190 * 24 22 21 40 40 H 1.07996 * 119.92435 * 179.97438 * 25 24 22 41 41 H 1.09002 * 110.48438 * 261.59441 * 28 10 9 42 42 H 1.08998 * 110.48431 * 24.10269 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9716 -3.5602 0.5860 12 6 2.3989 -4.0685 -1.4434 13 6 1.7095 -5.4266 -1.6887 14 6 1.5296 -6.0230 -0.2706 15 1 2.4573 -6.4768 0.0781 16 6 0.3860 -7.0392 -0.2508 17 7 0.7500 -8.1999 -1.0673 18 6 -0.1102 -9.2294 -1.1964 19 8 -1.1879 -9.1950 -0.6351 20 6 0.2568 -10.4000 -2.0204 21 6 1.4913 -10.4399 -2.6710 22 6 1.8300 -11.5395 -3.4354 23 9 3.0261 -11.5823 -4.0620 24 6 0.9426 -12.5966 -3.5653 25 6 -0.2835 -12.5601 -2.9281 26 6 -0.6325 -11.4685 -2.1563 27 17 -2.1733 -11.4248 -1.3577 28 6 1.1732 -4.7790 0.5806 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 3.4781 -4.1717 -1.5572 32 1 2.0192 -3.3251 -2.1443 33 1 0.7409 -5.2818 -2.1673 34 1 2.3436 -6.0721 -2.2965 35 1 0.2025 -7.3596 0.7748 36 1 -0.5158 -6.5794 -0.6547 37 1 1.6102 -8.2275 -1.5149 38 1 2.1814 -9.6149 -2.5740 39 1 1.2104 -13.4523 -4.1675 40 1 -0.9704 -13.3867 -3.0338 41 1 1.4161 -4.9519 1.6291 42 1 0.1181 -4.5284 0.4707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086812103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -72.694637 kcal Electronic energy + Delta-G solvation = -26012.357119 eV Core-core repulsion = 21931.825255 eV Total energy + Delta-G solvation = -4080.531864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.01138 -41.35728 -39.78328 -39.06813 -37.40272 -36.33832 -35.04156 -33.05870 -32.24863 -31.32683 -30.21808 -28.78266 -26.27988 -25.15896 -24.61368 -23.58776 -21.89567 -21.18954 -20.63409 -19.47981 -19.07790 -18.00708 -17.67125 -17.26247 -16.95647 -16.80056 -16.62727 -16.40538 -16.09471 -15.69596 -15.39337 -15.19692 -14.69907 -14.54206 -14.51584 -14.10534 -13.98418 -13.59723 -13.47891 -13.17047 -13.01658 -12.67533 -12.56338 -12.46698 -12.31890 -12.27329 -12.14240 -11.87625 -11.70869 -11.61726 -11.55131 -11.26146 -10.89700 -10.68078 -10.43523 -10.09606 -9.70276 -8.96890 -7.92886 -5.20686 -0.54593 -0.14522 1.08289 1.46608 1.49541 1.55624 1.64889 2.01256 2.46569 2.57242 2.98540 3.38752 3.43671 3.51219 3.69622 3.77022 3.82335 3.88697 4.02861 4.25691 4.28071 4.40898 4.51384 4.53198 4.61501 4.70314 4.73258 4.79215 4.80651 4.86988 4.92347 4.97860 5.07766 5.12994 5.24384 5.33441 5.46622 5.51076 5.52679 5.55333 5.68897 6.30378 6.45116 7.12818 7.35025 8.15009 8.35754 9.30643 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.002043 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.158280 B =13702.569491 C =14743.552034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.737 5.737 10 C 0.163 3.837 11 H 0.045 0.955 12 C -0.140 4.140 13 C -0.106 4.106 14 C -0.085 4.085 15 H 0.108 0.892 16 C 0.137 3.863 17 N -0.707 5.707 18 C 0.546 3.454 19 O -0.549 6.549 20 C -0.115 4.115 21 C -0.106 4.106 22 C 0.092 3.908 23 F -0.133 7.133 24 C -0.103 4.103 25 C -0.085 4.085 26 C -0.016 4.016 27 Cl -0.044 7.044 28 C -0.114 4.114 29 H 0.249 0.751 30 H 0.370 0.630 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.413 0.587 38 H 0.167 0.833 39 H 0.181 0.819 40 H 0.175 0.825 41 H 0.073 0.927 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.683 -32.007 -8.003 33.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.377 5.377 10 C 0.055 3.945 11 H 0.063 0.937 12 C -0.180 4.180 13 C -0.144 4.144 14 C -0.104 4.104 15 H 0.126 0.874 16 C 0.013 3.987 17 N -0.359 5.359 18 C 0.333 3.667 19 O -0.427 6.427 20 C -0.119 4.119 21 C -0.125 4.125 22 C 0.072 3.928 23 F -0.112 7.112 24 C -0.122 4.122 25 C -0.103 4.103 26 C -0.044 4.044 27 Cl -0.015 7.015 28 C -0.153 4.153 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.251 0.749 38 H 0.185 0.815 39 H 0.198 0.802 40 H 0.192 0.808 41 H 0.091 0.909 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.981 -31.812 -7.522 32.930 hybrid contribution 0.162 1.567 -0.127 1.581 sum 4.144 -30.245 -7.649 31.471 Atomic orbital electron populations 1.69813 1.06630 1.25965 1.59891 1.25562 0.96359 1.01112 1.04197 0.85238 0.77178 0.79353 0.78183 1.20423 1.22419 1.20376 1.19608 0.91395 0.85396 1.40495 0.90684 1.42766 1.05295 1.01112 1.88537 1.21147 0.94137 0.84931 0.94326 0.93658 1.22797 1.00004 0.96887 0.98338 1.22341 1.00293 0.95561 0.96199 1.22213 0.98439 0.93641 0.96102 0.87388 1.21266 0.97396 0.84869 0.95132 1.45782 1.20591 1.18148 1.51427 1.18307 0.84276 0.82991 0.81115 1.90887 1.23365 1.80412 1.48075 1.19525 0.95332 0.95271 1.01737 1.21405 0.95804 0.99158 0.96157 1.17672 0.82716 0.96158 0.96245 1.91562 1.42823 1.96607 1.80181 1.21661 0.92144 0.98920 0.99464 1.21226 0.97263 0.97163 0.94663 1.21348 0.88892 0.96006 0.98121 1.98435 1.26557 1.98233 1.78240 1.22508 0.99448 0.93872 0.99459 0.94178 0.79780 0.91604 0.94448 0.93052 0.89285 0.91378 0.92799 0.74921 0.81547 0.80185 0.80755 0.90875 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.97 46.53 29.55 68.60 2.03 48.55 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.24 -13.19 9.96 84.03 0.84 -12.35 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -37.20 5.04 -319.51 -1.61 -38.81 16 10 C 0.16 6.16 3.55 45.71 0.16 6.32 16 11 H 0.05 1.73 8.09 -2.39 -0.02 1.71 16 12 C -0.14 -4.55 6.59 31.32 0.21 -4.35 16 13 C -0.11 -2.52 5.97 31.67 0.19 -2.34 16 14 C -0.08 -1.84 2.96 -9.50 -0.03 -1.86 16 15 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 16 C 0.14 3.01 5.11 86.38 0.44 3.46 16 17 N -0.71 -12.73 5.35 -466.03 -2.49 -15.23 16 18 C 0.55 12.23 7.77 86.77 0.67 12.91 16 19 O -0.55 -16.51 13.96 -3.91 -0.05 -16.57 16 20 C -0.11 -1.96 5.88 -20.08 -0.12 -2.08 16 21 C -0.11 -1.24 9.52 22.57 0.21 -1.03 16 22 C 0.09 0.97 7.29 22.34 0.16 1.14 16 23 F -0.13 -1.61 17.26 44.97 0.78 -0.83 16 24 C -0.10 -0.75 10.02 22.36 0.22 -0.53 16 25 C -0.08 -0.81 9.82 22.25 0.22 -0.59 16 26 C -0.02 -0.26 6.35 22.60 0.14 -0.11 16 27 Cl -0.04 -0.94 26.02 -2.72 -0.07 -1.01 16 28 C -0.11 -3.45 5.97 31.67 0.19 -3.26 16 29 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.37 20.32 7.54 -92.70 -0.70 19.62 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 1.48 7.92 -2.39 -0.02 1.46 16 33 H 0.05 1.38 8.01 -2.39 -0.02 1.36 16 34 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 37 H 0.41 4.82 6.36 -92.71 -0.59 4.23 16 38 H 0.17 1.18 6.40 -2.91 -0.02 1.16 16 39 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 40 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.05 1.84 7.64 -2.39 -0.02 1.82 16 Total: -1.00 -72.66 366.84 2.62 -70.04 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.22 Total: 22.90 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 3.98 Total: -8.89 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -3.82 Total: -114.19 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.05 Total: -16.57 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.78 Total: -0.83 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.07 Total: -1.01 kcal Total: -72.66 2.62 -70.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086812103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.655 kcal (2) G-P(sol) polarization free energy of solvation -72.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds