Wall clock time and date at job start Sat Apr 11 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00073 * 2 1 4 4 H 1.48504 * 109.47068 * 240.00027 * 3 2 1 5 5 H 1.48500 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47521 * 119.99836 * 3 2 1 7 7 C 1.38821 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99942 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99740 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.67156 * 36.78090 * 10 9 7 12 12 C 1.54882 * 110.75750 * 273.54232 * 10 9 7 13 13 C 1.54264 * 104.19756 * 203.55741 * 12 10 9 14 14 C 1.53869 * 106.59882 * 23.61333 * 13 12 10 15 15 H 1.09009 * 110.03182 * 240.66951 * 14 13 12 16 16 C 1.52992 * 110.03668 * 119.28491 * 14 13 12 17 17 N 1.46499 * 109.47525 * 66.45132 * 16 14 13 18 18 C 1.34776 * 120.00498 * 180.02562 * 17 16 14 19 19 O 1.21550 * 119.99938 * 0.02562 * 18 17 16 20 20 C 1.47856 * 119.99975 * 179.97438 * 18 17 16 21 21 C 1.39575 * 120.12417 * 180.02562 * 20 18 17 22 22 C 1.38175 * 119.85140 * 180.30608 * 21 20 18 23 23 F 1.35102 * 119.94745 * 179.72263 * 22 21 20 24 24 C 1.38570 * 120.10832 * 359.45907 * 22 21 20 25 25 C 1.38417 * 120.25248 * 0.52449 * 24 22 21 26 26 Cl 1.73597 * 119.92320 * 179.74006 * 25 24 22 27 27 C 1.38104 * 120.14656 * 359.75527 * 25 24 22 28 28 C 1.54263 * 106.59965 * 359.97438 * 14 13 12 29 29 H 0.96992 * 119.99724 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00493 * 359.97438 * 9 7 2 31 31 H 1.09003 * 110.48747 * 84.87874 * 12 10 9 32 32 H 1.09000 * 110.60088 * 322.29363 * 12 10 9 33 33 H 1.09005 * 110.03319 * 264.32373 * 13 12 10 34 34 H 1.09005 * 110.03374 * 142.89861 * 13 12 10 35 35 H 1.09004 * 109.46888 * 306.45314 * 16 14 13 36 36 H 1.08995 * 109.47637 * 186.45641 * 16 14 13 37 37 H 0.97006 * 119.99447 * 0.02562 * 17 16 14 38 38 H 1.08002 * 120.07104 * 0.02562 * 21 20 18 39 39 H 1.07995 * 119.87819 * 180.26078 * 24 22 21 40 40 H 1.08002 * 120.05655 * 179.97438 * 27 25 24 41 41 H 1.09002 * 110.48589 * 95.06643 * 28 14 13 42 42 H 1.08999 * 110.48984 * 217.71617 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9579 -3.5816 0.6112 12 6 2.4100 -4.0874 -1.4450 13 6 2.5943 -5.6161 -1.3501 14 6 1.7970 -6.0793 -0.1183 15 1 2.4654 -6.5467 0.6050 16 6 0.7081 -7.0678 -0.5400 17 7 1.3306 -8.2970 -1.0379 18 6 0.5604 -9.3158 -1.4684 19 8 -0.6506 -9.2147 -1.4440 20 6 1.1887 -10.5561 -1.9715 21 6 0.3937 -11.6126 -2.4184 22 6 0.9867 -12.7716 -2.8815 23 9 0.2189 -13.7976 -3.3093 24 6 2.3677 -12.8812 -2.9128 25 6 3.1604 -11.8360 -2.4710 26 17 4.8896 -11.9851 -2.5078 27 6 2.5787 -10.6751 -2.0007 28 6 1.1566 -4.8159 0.4928 29 1 -0.4849 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 3.3349 -3.6112 -1.7705 32 1 1.5957 -3.8430 -2.1270 33 1 3.6497 -5.8579 -1.2244 34 1 2.2055 -6.0956 -2.2485 35 1 0.0997 -6.6237 -1.3279 36 1 0.0776 -7.3016 0.3178 37 1 2.2971 -8.3775 -1.0577 38 1 -0.6827 -11.5262 -2.3981 39 1 2.8273 -13.7871 -3.2794 40 1 3.1986 -9.8607 -1.6559 41 1 0.1383 -4.6887 0.1256 42 1 1.1666 -4.8716 1.5814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086812384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:16 Heat of formation + Delta-G solvation = -82.738191 kcal Electronic energy + Delta-G solvation = -25719.077662 eV Core-core repulsion = 21638.110277 eV Total energy + Delta-G solvation = -4080.967385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.10807 -41.45701 -39.85230 -39.17869 -37.52446 -36.40408 -35.09103 -32.92282 -32.26158 -31.67070 -30.18139 -28.79412 -26.37273 -25.13564 -24.49475 -23.83605 -21.94242 -21.13657 -20.67928 -19.58294 -19.05768 -17.99407 -17.48828 -17.40980 -17.04108 -16.86404 -16.71702 -16.57737 -16.07270 -15.78749 -15.61802 -15.23207 -14.86240 -14.59572 -14.42142 -14.25841 -14.00527 -13.60661 -13.42115 -13.23453 -12.92276 -12.81470 -12.66474 -12.45076 -12.37592 -12.19968 -12.13343 -11.95625 -11.77097 -11.64630 -11.52180 -11.25324 -11.15805 -10.86849 -10.37889 -10.08037 -9.95558 -8.96320 -7.92648 -5.20548 -0.60090 -0.22690 0.84885 1.47445 1.50347 1.50766 1.56387 1.93755 2.42000 2.57689 2.99495 3.32723 3.39698 3.63391 3.70558 3.75746 3.81766 3.82128 3.88495 4.03438 4.32443 4.37608 4.47426 4.51415 4.65107 4.66913 4.68201 4.79502 4.81476 4.82806 4.85881 4.94099 5.11771 5.14793 5.21889 5.29165 5.39620 5.46982 5.51700 5.57363 5.66958 6.30247 6.40134 7.05404 7.35339 8.14858 8.35748 9.30890 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021456 B = 0.001885 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.712705 B =14852.139319 C =15839.863631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.737 5.737 10 C 0.163 3.837 11 H 0.053 0.947 12 C -0.140 4.140 13 C -0.110 4.110 14 C -0.084 4.084 15 H 0.107 0.893 16 C 0.132 3.868 17 N -0.702 5.702 18 C 0.557 3.443 19 O -0.573 6.573 20 C -0.097 4.097 21 C -0.100 4.100 22 C 0.103 3.897 23 F -0.133 7.133 24 C -0.113 4.113 25 C -0.017 4.017 26 Cl -0.038 7.038 27 C -0.076 4.076 28 C -0.116 4.116 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.417 0.583 38 H 0.146 0.854 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.054 0.946 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.272 -30.911 -4.802 32.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.376 5.376 10 C 0.055 3.945 11 H 0.071 0.929 12 C -0.180 4.180 13 C -0.148 4.148 14 C -0.103 4.103 15 H 0.125 0.875 16 C 0.008 3.992 17 N -0.354 5.354 18 C 0.344 3.656 19 O -0.453 6.453 20 C -0.101 4.101 21 C -0.120 4.120 22 C 0.083 3.917 23 F -0.111 7.111 24 C -0.132 4.132 25 C -0.044 4.044 26 Cl -0.009 7.009 27 C -0.095 4.095 28 C -0.155 4.155 29 H 0.058 0.942 30 H 0.203 0.797 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.255 0.745 38 H 0.164 0.836 39 H 0.189 0.811 40 H 0.187 0.813 41 H 0.073 0.927 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.709 -30.728 -4.772 32.577 hybrid contribution -0.127 1.118 -0.221 1.146 sum 9.581 -29.611 -4.993 31.520 Atomic orbital electron populations 1.69816 1.06635 1.25984 1.59855 1.25578 0.96376 1.01158 1.04172 0.85230 0.77168 0.79297 0.78201 1.20473 1.22463 1.20267 1.19602 0.91425 0.85314 1.40526 0.90578 1.42615 1.05382 1.01198 1.88407 1.21474 0.94173 0.84556 0.94336 0.92876 1.22898 0.99904 0.96306 0.98900 1.22173 1.01075 0.94120 0.97388 1.21844 0.96337 0.93963 0.98186 0.87487 1.21440 0.95560 0.83336 0.98833 1.45780 1.11037 1.14930 1.63663 1.18279 0.86291 0.83548 0.77460 1.90812 1.15532 1.82295 1.56675 1.19484 0.93349 0.94249 1.02996 1.21367 1.02254 0.91359 0.97026 1.17269 0.88610 0.85336 1.00466 1.91556 1.75138 1.56972 1.87467 1.21398 0.91084 1.00808 0.99934 1.20485 0.86441 0.95197 1.02276 1.98431 1.07609 1.97885 1.96939 1.21469 0.93064 0.97765 0.97203 1.22467 0.98856 0.93724 1.00451 0.94171 0.79744 0.93237 0.94405 0.89258 0.91314 0.92672 0.91459 0.74463 0.83608 0.81086 0.81282 0.92701 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.24 -13.05 9.98 84.04 0.84 -12.22 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -36.84 5.26 -316.88 -1.67 -38.51 16 10 C 0.16 6.04 3.53 46.27 0.16 6.21 16 11 H 0.05 1.97 8.12 -2.39 -0.02 1.95 16 12 C -0.14 -4.52 6.51 31.67 0.21 -4.31 16 13 C -0.11 -2.28 6.13 31.32 0.19 -2.09 16 14 C -0.08 -1.67 2.98 -10.07 -0.03 -1.70 16 15 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 16 C 0.13 2.72 4.70 86.38 0.41 3.13 16 17 N -0.70 -11.22 5.24 -465.98 -2.44 -13.66 16 18 C 0.56 11.47 7.77 86.79 0.67 12.15 16 19 O -0.57 -17.00 16.35 -3.87 -0.06 -17.06 16 20 C -0.10 -1.49 5.87 -20.10 -0.12 -1.61 16 21 C -0.10 -1.63 9.57 22.58 0.22 -1.41 16 22 C 0.10 1.41 7.29 22.33 0.16 1.58 16 23 F -0.13 -2.07 17.26 44.97 0.78 -1.29 16 24 C -0.11 -1.13 9.80 22.39 0.22 -0.91 16 25 C -0.02 -0.17 6.31 22.28 0.14 -0.02 16 26 Cl -0.04 -0.34 28.95 -2.72 -0.08 -0.42 16 27 C -0.08 -0.75 9.32 22.55 0.21 -0.54 16 28 C -0.12 -3.38 5.97 31.66 0.19 -3.19 16 29 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.37 20.16 7.73 -92.71 -0.72 19.44 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.07 1.34 7.58 -2.38 -0.02 1.32 16 35 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.42 3.78 6.34 -92.70 -0.59 3.19 16 38 H 0.15 2.64 7.65 -2.91 -0.02 2.61 16 39 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.17 0.78 6.40 -2.91 -0.02 0.76 16 41 H 0.05 1.77 7.74 -2.39 -0.02 1.76 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -70.77 370.99 2.54 -68.23 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.23 Total: 23.44 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 3.94 Total: -9.14 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -3.83 Total: -111.93 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.06 Total: -17.06 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.78 Total: -1.29 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.42 kcal Total: -70.77 2.54 -68.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086812384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.511 kcal (2) G-P(sol) polarization free energy of solvation -70.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds