Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99432 * 2 1 4 4 H 1.48501 * 109.47136 * 269.99815 * 3 2 1 5 5 H 1.48496 * 109.47293 * 30.00019 * 3 2 1 6 6 H 1.48502 * 109.46739 * 149.99819 * 3 2 1 7 7 C 1.38804 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00000 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00186 * 180.02562 * 7 2 1 10 10 C 1.46506 * 120.00080 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.01478 * 34.94022 * 10 9 7 12 12 C 1.53869 * 110.02971 * 273.54217 * 10 9 7 13 13 C 1.54266 * 106.60031 * 240.71516 * 12 10 9 14 14 C 1.54894 * 104.31305 * 336.32486 * 13 12 10 15 15 H 1.08993 * 110.76071 * 279.69749 * 14 13 12 16 16 C 1.53004 * 110.75410 * 156.31914 * 14 13 12 17 17 N 1.46501 * 109.46679 * 66.45847 * 16 14 13 18 18 C 1.34780 * 119.99650 * 179.97438 * 17 16 14 19 19 O 1.21581 * 119.99780 * 359.97438 * 18 17 16 20 20 C 1.47610 * 120.00066 * 180.02562 * 18 17 16 21 21 C 1.39896 * 120.18066 * 89.71919 * 20 18 17 22 22 F 1.35099 * 120.10080 * 359.97438 * 21 20 18 23 23 C 1.38237 * 119.79463 * 179.81532 * 21 20 18 24 24 C 1.38291 * 120.15617 * 0.44468 * 23 21 20 25 25 C 1.38348 * 120.35934 * 359.78634 * 24 23 21 26 26 C 1.38073 * 120.20279 * 0.02562 * 25 24 23 27 27 Cl 1.73605 * 120.07757 * 179.97438 * 26 25 24 28 28 C 1.54266 * 110.03132 * 156.37835 * 10 9 7 29 29 H 0.97004 * 120.00629 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99885 * 359.97438 * 9 7 2 31 31 H 1.09001 * 110.02983 * 121.43268 * 12 10 9 32 32 H 1.08995 * 110.03881 * 0.02562 * 12 10 9 33 33 H 1.09002 * 110.48629 * 95.07240 * 13 12 10 34 34 H 1.08998 * 110.48744 * 217.58143 * 13 12 10 35 35 H 1.09005 * 109.46490 * 186.45605 * 16 14 13 36 36 H 1.08995 * 109.47187 * 306.45376 * 16 14 13 37 37 H 0.96999 * 120.00480 * 0.02562 * 17 16 14 38 38 H 1.08000 * 119.92309 * 180.18735 * 23 21 20 39 39 H 1.07998 * 119.82632 * 179.76623 * 24 23 21 40 40 H 1.08002 * 119.89933 * 179.97438 * 25 24 23 41 41 H 1.09005 * 110.48526 * 261.57511 * 28 10 9 42 42 H 1.09006 * 110.48581 * 24.21703 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 3.5720 -3.2135 -0.5869 12 6 4.2979 -2.9721 1.4428 13 6 5.8186 -3.0529 1.6891 14 6 6.4288 -3.1962 0.2727 15 1 6.3587 -4.2265 -0.0757 16 6 7.8809 -2.7143 0.2566 17 7 8.7016 -3.6097 1.0758 18 6 10.0230 -3.3797 1.2084 19 8 10.5339 -2.4295 0.6479 20 6 10.8500 -4.2822 2.0333 21 6 11.4565 -5.4035 1.4571 22 9 11.2868 -5.6650 0.1425 23 6 12.2325 -6.2412 2.2362 24 6 12.4020 -5.9778 3.5831 25 6 11.8013 -4.8734 4.1607 26 6 11.0263 -4.0247 3.3956 27 17 10.2735 -2.6402 4.1238 28 6 5.5267 -2.2642 -0.5802 29 1 -0.4851 0.8400 -0.0004 30 1 3.8646 -0.3619 0.0004 31 1 3.8484 -3.9587 1.5560 32 1 3.8426 -2.2718 2.1430 33 1 6.1764 -2.1415 2.1683 34 1 6.0606 -3.9235 2.2986 35 1 8.2529 -2.7161 -0.7680 36 1 7.9326 -1.7031 0.6602 37 1 8.2942 -4.3685 1.5221 38 1 12.7041 -7.1057 1.7928 39 1 13.0063 -6.6379 4.1876 40 1 11.9384 -4.6750 5.2134 41 1 5.5559 -2.5605 -1.6288 42 1 5.8373 -1.2254 -0.4675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086860714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -80.429579 kcal Electronic energy + Delta-G solvation = -26409.541094 eV Core-core repulsion = 22328.673818 eV Total energy + Delta-G solvation = -4080.867276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.18176 -41.29819 -39.87863 -39.26173 -37.63460 -36.47897 -35.06336 -33.15696 -32.46696 -31.61542 -30.32812 -29.04407 -26.30092 -24.82526 -24.35312 -23.93472 -22.00395 -21.33542 -20.72982 -19.62166 -19.29718 -18.44386 -17.97463 -17.56499 -16.96511 -16.69157 -16.53818 -16.37817 -16.00619 -15.83574 -15.72959 -14.98050 -14.77201 -14.74048 -14.40026 -14.38301 -14.25350 -13.96764 -13.37989 -13.22499 -13.19912 -12.75451 -12.65787 -12.51530 -12.28025 -12.22338 -12.17063 -11.94618 -11.83577 -11.74208 -11.61370 -11.36029 -11.18943 -10.97064 -10.25730 -10.18567 -9.89517 -9.28946 -8.02837 -5.34956 -0.33746 -0.14282 0.83346 1.26424 1.36484 1.38790 1.45977 1.93960 2.26571 2.47258 2.97290 3.27616 3.37828 3.56234 3.63341 3.71536 3.73964 3.79332 4.07018 4.09737 4.24903 4.34007 4.43198 4.54205 4.61133 4.64711 4.71563 4.74398 4.83132 4.86695 4.98842 5.00454 5.06464 5.11283 5.20514 5.22492 5.40767 5.49002 5.55442 5.57213 5.79894 6.22610 6.28986 6.95504 7.08571 7.87088 8.04293 9.18888 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020123 B = 0.002347 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.112491 B =11928.902743 C =12363.237552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.953 3.047 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.255 1.255 7 C -0.225 4.225 8 H 0.057 0.943 9 N -0.751 5.751 10 C 0.168 3.832 11 H 0.047 0.953 12 C -0.140 4.140 13 C -0.106 4.106 14 C -0.086 4.086 15 H 0.105 0.895 16 C 0.133 3.867 17 N -0.699 5.699 18 C 0.562 3.438 19 O -0.567 6.567 20 C -0.178 4.178 21 C 0.124 3.876 22 F -0.138 7.138 23 C -0.140 4.140 24 C -0.043 4.043 25 C -0.114 4.114 26 C 0.004 3.996 27 Cl -0.056 7.056 28 C -0.115 4.115 29 H 0.257 0.743 30 H 0.363 0.637 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.415 0.585 38 H 0.177 0.823 39 H 0.193 0.807 40 H 0.172 0.828 41 H 0.079 0.921 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.845 -17.763 10.346 37.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.780 3.220 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.180 1.180 7 C -0.356 4.356 8 H 0.075 0.925 9 N -0.395 5.395 10 C 0.060 3.940 11 H 0.065 0.935 12 C -0.180 4.180 13 C -0.143 4.143 14 C -0.105 4.105 15 H 0.123 0.877 16 C 0.010 3.990 17 N -0.350 5.350 18 C 0.347 3.653 19 O -0.446 6.446 20 C -0.183 4.183 21 C 0.103 3.897 22 F -0.116 7.116 23 C -0.158 4.158 24 C -0.061 4.061 25 C -0.133 4.133 26 C -0.024 4.024 27 Cl -0.027 7.027 28 C -0.154 4.154 29 H 0.065 0.935 30 H 0.197 0.803 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.252 0.748 38 H 0.194 0.806 39 H 0.210 0.790 40 H 0.190 0.810 41 H 0.097 0.903 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 31.876 -17.046 9.933 37.488 hybrid contribution -0.825 1.357 -0.266 1.610 sum 31.051 -15.689 9.667 36.108 Atomic orbital electron populations 1.69879 1.07045 1.26526 1.60152 1.25475 0.96095 1.01113 1.03106 0.85441 0.78550 0.79938 0.78034 1.20513 1.22402 1.17961 1.19052 0.82771 0.93315 1.40464 0.92472 1.42951 1.02410 1.03968 1.90143 1.21098 0.91521 0.86888 0.94525 0.93498 1.22767 0.96592 1.00442 0.98245 1.22334 0.93867 1.01993 0.96148 1.22270 0.91224 1.00767 0.96274 0.87665 1.21351 0.89475 0.93111 0.95064 1.45872 1.07042 1.31374 1.50704 1.18216 0.82728 0.84151 0.80190 1.90812 1.73463 1.31554 1.48734 1.19739 1.05834 0.98399 0.94307 1.17794 0.99070 0.94378 0.78423 1.91543 1.93917 1.93402 1.32765 1.21648 0.98607 1.00618 0.94926 1.21678 0.95653 0.95313 0.93457 1.21535 0.95837 0.93863 1.02022 1.20907 0.98892 0.91806 0.90757 1.98438 1.80578 1.41418 1.82254 1.22607 0.93341 0.99711 0.99756 0.93453 0.80345 0.91959 0.93871 0.92543 0.89741 0.91328 0.92306 0.74829 0.80578 0.78996 0.81025 0.90265 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.05 13.97 21.65 0.30 -63.75 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.95 46.66 27.74 68.60 1.90 48.56 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 6 H -0.25 -11.40 6.52 99.48 0.65 -10.75 16 7 C -0.22 -12.92 10.44 84.03 0.88 -12.04 16 8 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 9 N -0.75 -35.18 4.84 -319.53 -1.55 -36.73 16 10 C 0.17 6.12 3.55 45.71 0.16 6.29 16 11 H 0.05 1.81 8.09 -2.39 -0.02 1.79 16 12 C -0.14 -4.52 6.59 31.32 0.21 -4.31 16 13 C -0.11 -2.49 5.96 31.67 0.19 -2.30 16 14 C -0.09 -1.85 2.98 -9.38 -0.03 -1.88 16 15 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 16 C 0.13 2.99 5.12 86.38 0.44 3.43 16 17 N -0.70 -14.28 5.40 -466.19 -2.52 -16.80 16 18 C 0.56 14.08 5.95 86.72 0.52 14.60 16 19 O -0.57 -19.13 17.11 -3.97 -0.07 -19.20 16 20 C -0.18 -3.40 5.64 -20.04 -0.11 -3.52 16 21 C 0.12 1.94 7.29 22.67 0.17 2.11 16 22 F -0.14 -2.72 16.83 44.97 0.76 -1.96 16 23 C -0.14 -0.99 10.01 22.28 0.22 -0.77 16 24 C -0.04 -0.13 10.03 22.31 0.22 0.09 16 25 C -0.11 -0.84 9.81 22.26 0.22 -0.62 16 26 C 0.00 0.06 6.35 22.60 0.14 0.20 16 27 Cl -0.06 -1.04 28.04 -2.72 -0.08 -1.12 16 28 C -0.12 -3.24 5.99 31.79 0.19 -3.05 16 29 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 30 H 0.36 16.53 5.40 -92.70 -0.50 16.03 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.65 7.92 -2.39 -0.02 1.63 16 33 H 0.06 1.44 8.01 -2.39 -0.02 1.42 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 37 H 0.41 6.30 8.32 -92.71 -0.77 5.53 16 38 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 39 H 0.19 -1.01 8.06 -2.91 -0.02 -1.03 16 40 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 41 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.06 1.87 7.64 -2.38 -0.02 1.86 16 Total: -1.00 -79.17 370.60 2.37 -76.80 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.27 Total: 19.50 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 3.88 Total: -5.29 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -3.76 Total: -117.28 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.07 Total: -19.20 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.76 Total: -1.96 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.90 Total: 48.56 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -79.17 2.37 -76.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086860714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.631 kcal (2) G-P(sol) polarization free energy of solvation -79.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds