Wall clock time and date at job start Sat Apr 11 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38157 * 120.08119 * 2 1 4 4 F 1.35103 * 119.93980 * 0.02670 * 3 2 1 5 5 C 1.38581 * 120.12794 * 180.30137 * 3 2 1 6 6 C 1.38285 * 120.29244 * 359.72406 * 5 3 2 7 7 C 1.38110 * 120.15713 * 0.02562 * 6 5 3 8 8 Cl 1.73603 * 120.06559 * 179.97438 * 7 6 5 9 9 C 1.39564 * 120.07703 * 179.77297 * 2 1 3 10 10 C 1.47782 * 120.14733 * 359.97266 * 9 2 1 11 11 O 1.21554 * 119.99703 * 269.72950 * 10 9 2 12 12 N 1.34771 * 119.99844 * 89.72606 * 10 9 2 13 13 C 1.46501 * 120.00020 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47405 * 179.97438 * 13 12 10 15 15 C 1.53781 * 113.61492 * 174.99701 * 14 13 12 16 16 C 1.53781 * 87.08070 * 140.06794 * 15 14 13 17 17 N 1.46506 * 113.61361 * 89.11956 * 16 15 14 18 18 C 1.36932 * 119.99948 * 156.53166 * 17 16 15 19 19 H 1.08003 * 120.00194 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99870 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99941 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99894 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47283 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46791 * 120.00116 * 22 20 18 25 25 H 1.48492 * 109.47273 * 240.00144 * 22 20 18 26 26 C 1.53773 * 87.17302 * 334.52628 * 16 15 14 27 27 H 1.09004 * 109.47176 * 270.23035 * 1 2 3 28 28 H 1.09001 * 109.47032 * 30.22366 * 1 2 3 29 29 H 1.08995 * 109.47361 * 150.22643 * 1 2 3 30 30 H 1.08006 * 119.85694 * 179.70452 * 5 3 2 31 31 H 1.08000 * 119.92018 * 179.97438 * 6 5 3 32 32 H 0.96997 * 120.00572 * 359.97438 * 12 10 9 33 33 H 1.09002 * 109.46995 * 59.99707 * 13 12 10 34 34 H 1.08998 * 109.46746 * 299.99904 * 13 12 10 35 35 H 1.08998 * 112.84975 * 43.80400 * 14 13 12 36 36 H 1.09001 * 113.61537 * 25.52248 * 15 14 13 37 37 H 1.08998 * 113.61680 * 254.61401 * 15 14 13 38 38 H 1.09002 * 113.61408 * 219.93560 * 16 15 14 39 39 H 0.96997 * 119.99707 * 336.52824 * 17 16 15 40 40 H 0.97000 * 119.99576 * 179.97438 * 21 20 18 41 41 H 1.09007 * 113.61678 * 140.01927 * 26 16 15 42 42 H 1.09000 * 113.61916 * 270.92600 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1955 0.0000 4 9 1.5244 2.3658 0.0005 5 6 3.5853 1.1966 -0.0063 6 6 4.2838 0.0032 -0.0069 7 6 3.6037 -1.1988 -0.0017 8 17 4.4830 -2.6957 -0.0031 9 6 2.2065 -1.2077 0.0048 10 6 1.4726 -2.4904 0.0105 11 8 1.1755 -3.0159 1.0655 12 7 1.1326 -3.0774 -1.1541 13 6 0.4046 -4.3487 -1.1485 14 6 0.1443 -4.7938 -2.5889 15 6 -0.5093 -6.1816 -2.6963 16 6 -1.3682 -5.6024 -3.8328 17 7 -0.7548 -5.7328 -5.1569 18 6 -1.5397 -5.7240 -6.2789 19 1 -2.6110 -5.6212 -6.1878 20 6 -0.9585 -5.8470 -7.5335 21 7 0.3469 -5.9728 -7.6445 22 14 -2.0293 -5.8356 -9.0641 23 1 -3.4533 -5.6837 -8.6709 24 1 -1.6335 -4.7010 -9.9366 25 1 -1.8525 -7.1123 -9.8015 26 6 -1.1548 -4.2227 -3.1883 27 1 -0.3634 0.0041 1.0277 28 1 -0.3633 0.8880 -0.5173 29 1 -0.3634 -0.8920 -0.5103 30 1 4.1222 2.1338 -0.0111 31 1 5.3638 0.0111 -0.0122 32 1 1.3693 -2.6579 -1.9960 33 1 -0.5460 -4.2207 -0.6307 34 1 0.9986 -5.1052 -0.6358 35 1 1.0141 -4.6697 -3.2340 36 1 -1.0845 -6.4628 -1.8142 37 1 0.1768 -6.9633 -3.0224 38 1 -2.4048 -5.9386 -3.8116 39 1 0.2072 -5.8255 -5.2387 40 1 0.7530 -6.0591 -8.5212 41 1 -0.9895 -3.4238 -3.9113 42 1 -1.9061 -3.9692 -2.4404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091104837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:36 Heat of formation + Delta-G solvation = -37.853819 kcal Electronic energy + Delta-G solvation = -26410.857888 eV Core-core repulsion = 22331.836835 eV Total energy + Delta-G solvation = -4079.021053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.38392 -40.62823 -39.04862 -38.25825 -36.88957 -34.74204 -33.50246 -33.17080 -31.22502 -30.13430 -27.93545 -27.26295 -25.10208 -24.42049 -23.54575 -22.33745 -21.74301 -20.83124 -18.80471 -18.13784 -17.50112 -17.29833 -16.74442 -16.57671 -16.29055 -16.00462 -15.24785 -14.88523 -14.45905 -14.26120 -14.06411 -13.90847 -13.83590 -13.63123 -13.40455 -13.23446 -13.04947 -12.94124 -12.41424 -12.28044 -12.01819 -11.95322 -11.54854 -11.42432 -11.35743 -11.07573 -10.88579 -10.54837 -10.34957 -10.15217 -9.89648 -9.72456 -9.53659 -9.49644 -9.11223 -9.01412 -8.91783 -7.03058 -5.83654 -3.12744 0.31693 0.47704 1.61991 2.31476 2.72197 2.99712 3.39464 3.45583 3.47603 3.72161 4.06957 4.17908 4.37724 4.53169 4.55921 4.85224 4.96660 5.00047 5.07233 5.16991 5.19389 5.22621 5.42427 5.44835 5.46939 5.56910 5.60038 5.65703 5.66598 5.82205 5.90704 6.05627 6.13528 6.17013 6.29034 6.33668 6.54950 6.70722 6.85342 7.00727 7.31996 7.66859 7.97389 8.35471 9.46348 10.03677 10.37800 11.38795 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.002480 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.525741 B =11288.300766 C =11676.891098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C 0.101 3.899 4 F -0.128 7.128 5 C -0.123 4.123 6 C -0.088 4.088 7 C -0.015 4.015 8 Cl -0.043 7.043 9 C -0.090 4.090 10 C 0.564 3.436 11 O -0.524 6.524 12 N -0.710 5.710 13 C 0.130 3.870 14 C -0.120 4.120 15 C -0.147 4.147 16 C 0.167 3.833 17 N -0.706 5.706 18 C -0.242 4.242 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.169 4.169 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.405 0.595 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.067 0.933 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.213 14.014 18.060 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.073 4.073 3 C 0.082 3.918 4 F -0.107 7.107 5 C -0.142 4.142 6 C -0.107 4.107 7 C -0.043 4.043 8 Cl -0.013 7.013 9 C -0.094 4.094 10 C 0.348 3.652 11 O -0.400 6.400 12 N -0.361 5.361 13 C 0.008 3.992 14 C -0.139 4.139 15 C -0.186 4.186 16 C 0.055 3.945 17 N -0.345 5.345 18 C -0.373 4.373 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.210 4.210 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.240 0.760 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.887 13.487 18.644 24.019 hybrid contribution 0.095 0.393 -1.298 1.360 sum 6.982 13.880 17.345 23.287 Atomic orbital electron populations 1.20869 0.88753 1.04366 1.03913 1.19868 0.97582 0.90062 0.99812 1.17360 0.89960 0.80958 1.03537 1.91530 1.80226 1.45208 1.93724 1.21230 0.92044 0.99707 1.01211 1.20859 1.01097 0.89308 0.99452 1.20940 0.90817 0.88913 1.03630 1.98428 1.75132 1.31245 1.96526 1.19599 0.91925 0.94041 1.03861 1.17863 0.79063 0.83628 0.84653 1.90828 1.54102 1.64185 1.30872 1.46073 1.57460 1.24451 1.08069 1.21568 0.96034 0.83717 0.97909 1.22768 0.98999 0.98461 0.93629 1.23423 0.99870 0.95421 0.99915 1.21046 0.95660 0.92465 0.85311 1.42181 1.06824 1.86161 0.99322 1.19326 0.90842 1.42298 0.84816 0.90949 1.24764 0.95786 1.02684 0.97640 1.69669 1.08530 1.56816 1.22985 0.86108 0.79431 0.77209 0.83384 1.20482 1.21838 1.21819 1.23942 0.95627 1.01540 0.99868 0.89680 0.90007 0.90266 0.83225 0.83187 0.76020 0.91252 0.91463 0.88782 0.90397 0.91276 0.92044 0.78109 0.93482 0.91447 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.44 36.01 0.34 -0.79 16 2 C -0.07 -0.72 5.92 -104.16 -0.62 -1.34 16 3 C 0.10 0.91 7.23 -39.48 -0.29 0.63 16 4 F -0.13 -1.19 16.47 2.25 0.04 -1.16 16 5 C -0.12 -0.88 10.02 -39.44 -0.39 -1.27 16 6 C -0.09 -0.66 9.81 -39.61 -0.39 -1.05 16 7 C -0.02 -0.15 6.35 -39.07 -0.25 -0.40 16 8 Cl -0.04 -0.46 28.04 -51.86 -1.45 -1.91 16 9 C -0.09 -1.01 5.63 -104.94 -0.59 -1.60 16 10 C 0.56 7.37 4.77 -12.36 -0.06 7.31 16 11 O -0.52 -8.55 17.11 5.32 0.09 -8.46 16 12 N -0.71 -8.49 5.55 -61.28 -0.34 -8.83 16 13 C 0.13 1.66 5.52 -4.04 -0.02 1.63 16 14 C -0.12 -1.71 3.64 -89.67 -0.33 -2.03 16 15 C -0.15 -2.26 7.38 -25.92 -0.19 -2.45 16 16 C 0.17 3.16 4.55 -67.12 -0.31 2.85 16 17 N -0.71 -17.02 5.31 -52.64 -0.28 -17.30 16 18 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 22 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C -0.17 -2.67 7.45 -25.78 -0.19 -2.86 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.66 7.64 -51.93 -0.40 0.26 16 29 H 0.08 0.77 7.08 -51.93 -0.37 0.40 16 30 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 31 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.41 4.38 8.46 -40.82 -0.35 4.04 16 33 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.17 8.11 -51.93 -0.42 0.75 16 39 H 0.38 9.83 7.90 -40.82 -0.32 9.50 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.07 1.19 8.14 -51.92 -0.42 0.76 16 42 H 0.07 0.95 7.91 -51.93 -0.41 0.54 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -31.23 375.61 -9.71 -40.94 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.60 Total: 9.40 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.53 Total: -8.51 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.10 Total: -52.88 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.45 Total: -1.91 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.23 -9.71 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091104837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.090 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds